jgi.p|Nanoce1779_2|41671, mRNA_11265 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|41671
Unique Name	mRNA_11265
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1430
Alignment location	scaffold_110:1859..3288 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	41757
Track	FilteredModels2
ProteinId	41671

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_110	supercontig	scaffold_110:1859..3288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|41671	gene_11265	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|41671	mRNA_11265-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11265	CDS_11265	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_110:1859..3288+
coding sequence from alignment at scaffold_110:1859..3288+

mRNA sequence

>mRNA_11265 ID=mRNA_11265|Name=jgi.p|Nanoce1779_2|41671|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
GGGATTTCGTAGTTGCTCCCTAGAAAGTTTTCTTTTATATATATGTTTAT
TCTCAATCTATTCGAAGGCGGTAGGGAGTGTAGAACCAATGACGGATAGT
GAAGACTGATTGAACTGTGTGCCATATTTCCTCGGCTTGGTTCATGAGGA
TGTGTTTTTTCCAGCGTACGGAGAAAAAGTAACTTACGGTTGGCGGCAAA
AGATGAACTACGATACTCACTCGAGAGCCCCCATAAATAGCTGTCTTGCC
ATCTATTTTATCTGGATCTTCTTGCCATCCATTTTTTCTGATTTCAACCG
ATGGTGAACGCGGCGAGGCTGGCTGATGGTTTAAGAGGAGATTTGTTTTG
GCTTTCTCAGGCGCCTCTCGTGGCGGCAAGGTACGGTACGTTGACCGCTA
TCATTACTCACTCCCTAATCATGTCATAGTCCTCCTACGATGACCTTTGC
GGGTATTACTTCCGTCTTAATACAAGCTGCGATGCGACGACTGGGTGGTC
AGTCACGTGGATGGGTGCACACGCAAACAAACACAAAAGAAGTAAATTAC
ACACATGTGCGGGTGCGAGAGGCCAGACTTAATCTTTGCTGCGACTCACA
AAAGCCCATGACGTGTAAATGCCATCCTAGACCATCTCTCCTTTCCCTCT
TTCCCTCCCTTTTATGGCCCATGTACCGGACCCCCCCCTCCTCCTACCCC
CAAGACCTGCCATCCCTCCTTCCCTCCCTCGCTCGCTCCCTCGCCCTAAG
TCCAGACGGGCGGATTCTCCGCGAGAAGGAAGGAAGGGACCTCGCTGAAG
TCAATGCGCTCGGCCGCCGCGATGGCCTCTTGGATCAGGCTCCACTTGTA
GTCCTGAGGGCGGATAAGGGAGAAAGGGAGAGAGGGGAACAAAGTCAGGA
TAGGCTGCAAACTCAATCGCGGAGGAGGAGGAGGAGGAGATATCAAACAA
AATCACGACTACTCCGTCCCCAGAACGCATCGAAATACTCGTTTCTCCCT
CCCCTCGTCCTGCTCCCTCTCTCCCTCCTGCCCTCCCTTATCCCCCCTAC
CTTCAGGCTGTTCGTCCCGAACTTGGCCCAGCTGACGGACTCCTGCATCT
TCTCTGTCTCTGTCTGCGTCGTGTCCAACAGGCAGGCGCGGAAATGCGCG
ATGGCCTCCACACGCGCCGCGGCGTCGGCCTGAGGCGAGGGCGGGAAGGA
GGGAGGGAGGCAAGGAGGAACAGACGATTGAATATGCACGTATTTTTCTC
TTGTTCAACTCTTACCTGCCCTTATATTCATGCCCCTGATCTCGGGGTTC
TCGGATGTGGCTCATCTCTCCTATCGGCCTTACAAGAAGGCTCACTGGTG
AAGTACATTGTCGCCTCACCTGCCCGGCCCCAATTCTCCCCTCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCCTCCCTCCC

protein sequence of jgi.p|Nanoce1779_2|41671

>mRNA_11265-protein ID=mRNA_11265-protein|Name=jgi.p|Nanoce1779_2|41671|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MTFAGITSVLIQAAMRRLGGQSRGWVHTQTNTKEVNYTHVRVREARLNLC
CDSQKPMTCKCHPRPSLLSLFPSLLWPMYRTPPSSYPQDLPSLLPSLARS
LALSPDGRILREKEGRDLAEVNALGRRDGLLDQAPLVVLRADKGERERGE
QSQDRLQTQSRRRRRRRYQTKSRLLRPQNASKYSFLPPLVLLPLSLLPSL
IPPTFRLFVPNLAQLTDSCIFSVSVCVVSNRQARKCAMASTRAAASA*

mRNA from alignment at scaffold_110:1859..3288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11265 ID=mRNA_11265|Name=jgi.p|Nanoce1779_2|41671|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp|location=Sequence derived from alignment at scaffold_110:1859..3288+ (Nannochloropsis oceanica)
GGGATTTCGTAGTTGCTCCCTAGAAAGTTTTCTTTTATATATATGTTTAT
TCTCAATCTATTCGAAGGCGGTAGGGAGTGTAGAACCAATGACGGATAGT
GAAGACTGATTGAACTGTGTGCCATATTTCCTCGGCTTGGTTCATGAGGA
TGTGTTTTTTCCAGCGTACGGAGAAAAAGTAACTTACGGTTGGCGGCAAA
AGATGAACTACGATACTCACTCGAGAGCCCCCATAAATAGCTGTCTTGCC
ATCTATTTTATCTGGATCTTCTTGCCATCCATTTTTTCTGATTTCAACCG
ATGGTGAACGCGGCGAGGCTGGCTGATGGTTTAAGAGGAGATTTGTTTTG
GCTTTCTCAGGCGCCTCTCGTGGCGGCAAGGTACGGTACGTTGACCGCTA
TCATTACTCACTCCCTAATCATGTCATAGTCCTCCTACGATGACCTTTGC
GGGTATTACTTCCGTCTTAATACAAGCTGCGATGCGACGACTGGGTGGTC
AGTCACGTGGATGGGTGCACACGCAAACAAACACAAAAGAAGTAAATTAC
ACACATGTGCGGGTGCGAGAGGCCAGACTTAATCTTTGCTGCGACTCACA
AAAGCCCATGACGTGTAAATGCCATCCTAGACCATCTCTCCTTTCCCTCT
TTCCCTCCCTTTTATGGCCCATGTACCGGACCCCCCCCTCCTCCTACCCC
CAAGACCTGCCATCCCTCCTTCCCTCCCTCGCTCGCTCCCTCGCCCTAAG
TCCAGACGGGCGGATTCTCCGCGAGAAGGAAGGAAGGGACCTCGCTGAAG
TCAATGCGCTCGGCCGCCGCGATGGCCTCTTGGATCAGGCTCCACTTGTA
GTCCTGAGGGCGGATAAGGGAGAAAGGGAGAGAGGGGAACAAAGTCAGGA
TAGGCTGCAAACTCAATCGCGGAGGAGGAGGAGGAGGAGATATCAAACAA
AATCACGACTACTCCGTCCCCAGAACGCATCGAAATACTCGTTTCTCCCT
CCCCTCGTCCTGCTCCCTCTCTCCCTCCTGCCCTCCCTTATCCCCCCTAC
CTTCAGGCTGTTCGTCCCGAACTTGGCCCAGCTGACGGACTCCTGCATCT
TCTCTGTCTCTGTCTGCGTCGTGTCCAACAGGCAGGCGCGGAAATGCGCG
ATGGCCTCCACACGCGCCGCGGCGTCGGCCTGAGGCGAGGGCGGGAAGGA
GGGAGGGAGGCAAGGAGGAACAGACGATTGAATATGCACGTATTTTTCTC
TTGTTCAACTCTTACCTGCCCTTATATTCATGCCCCTGATCTCGGGGTTC
TCGGATGTGGCTCATCTCTCCTATCGGCCTTACAAGAAGGCTCACTGGTG
AAGTACATTGTCGCCTCACCTGCCCGGCCCCAATTCTCCCCTCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCCTCCCTCCC

Coding sequence (CDS) from alignment at scaffold_110:1859..3288+

>mRNA_11265 ID=mRNA_11265|Name=jgi.p|Nanoce1779_2|41671|organism=Nannochloropsis oceanica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_110:1859..3288+ (Nannochloropsis oceanica)
ATGACCTTTGCGGGTATTACTTCCGTCTTAATACAAGCTGCGATGCGACG
ACTGGGTGGTCAGTCACGTGGATGGGTGCACACGCAAACAAACACAAAAG
AAGTAAATTACACACATGTGCGGGTGCGAGAGGCCAGACTTAATCTTTGC
TGCGACTCACAAAAGCCCATGACGTGTAAATGCCATCCTAGACCATCTCT
CCTTTCCCTCTTTCCCTCCCTTTTATGGCCCATGTACCGGACCCCCCCCT
CCTCCTACCCCCAAGACCTGCCATCCCTCCTTCCCTCCCTCGCTCGCTCC
CTCGCCCTAAGTCCAGACGGGCGGATTCTCCGCGAGAAGGAAGGAAGGGA
CCTCGCTGAAGTCAATGCGCTCGGCCGCCGCGATGGCCTCTTGGATCAGG
CTCCACTTGTAGTCCTGAGGGCGGATAAGGGAGAAAGGGAGAGAGGGGAA
CAAAGTCAGGATAGGCTGCAAACTCAATCGCGGAGGAGGAGGAGGAGGAG
ATATCAAACAAAATCACGACTACTCCGTCCCCAGAACGCATCGAAATACT
CGTTTCTCCCTCCCCTCGTCCTGCTCCCTCTCTCCCTCCTGCCCTCCCTT
ATCCCCCCTACCTTCAGGCTGTTCGTCCCGAACTTGGCCCAGCTGACGGA
CTCCTGCATCTTCTCTGTCTCTGTCTGCGTCGTGTCCAACAGGCAGGCGC
GGAAATGCGCGATGGCCTCCACACGCGCCGCGGCGTCGGCCTGA

Synonyms

Publications