jgi.p|Nanoce1779_2|615934, mRNA_11270 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615934
Unique NamemRNA_11270
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_110:13829..14387 -

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Properties
Property NameValue
TranscriptId616020
TrackFilteredModels2
ProteinId615934
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:13829..14387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615934gene_11270Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615934mRNA_11270-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11270CDS_11270Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11270 ID=mRNA_11270|Name=jgi.p|Nanoce1779_2|615934|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
TTTCTCAATTTCTTCGATTCGTTTTTTCGTTTTCATTTTCATGCTATCTC
TCCAAATTCCTCTCCCTCGCATCTGTCGGTGCTTTTGTCGTCACTGATTC
GTTGTGATGCTTTTGGTGCATCATTTCTTTTTTTGTATCTTGTCTCCTCT
TTCTTTTCTCCCCTCCTTGCCATGTCCGCCCTTCCTTCTTTGTTCATCGA
TTCCCCCCCTTCGTCTTTCTTTGTTTTTACATTTGTGGTGGCAATTCAAA
TGTACTTTAATTTAAAAATCGAAAGAAACTCACGCTTTCCGCTCCTGGTG
TTCCGATTCTTGGCTTCTGGCTGTTGCATCCAAGGAATCTCATCTGATAC
AAATAGACGGAGGAGGAGAGATGTAGGGCCGTATGAATATTTCTAAGGGT
TTTCCATCCATTCATGTGTCGGCGTCTGCTTCCGGCTCCGCCTCGTCATT
CCTCCCTTGCCCTTTCTCCCCTCCCTCCCTCCCTCCATACGCATTTCATA
TATATTCAAGCCTCCATTTATGCCTGCATCCCTCCGGCCTCCGCCCTTCC
CTCCGGAGG
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protein sequence of jgi.p|Nanoce1779_2|615934

>mRNA_11270-protein ID=mRNA_11270-protein|Name=jgi.p|Nanoce1779_2|615934|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MSALPSLFIDSPPSSFFVFTFVVAIQMYFNLKIERNSRFPLLVFRFLASG
CCIQGISSDTNRRRRRDVGPYEYF*
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mRNA from alignment at scaffold_110:13829..14387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11270 ID=mRNA_11270|Name=jgi.p|Nanoce1779_2|615934|organism=Nannochloropsis oceanica|type=mRNA|length=559bp|location=Sequence derived from alignment at scaffold_110:13829..14387- (Nannochloropsis oceanica)
TTTCTCAATTTCTTCGATTCGTTTTTTCGTTTTCATTTTCATGCTATCTC
TCCAAATTCCTCTCCCTCGCATCTGTCGGTGCTTTTGTCGTCACTGATTC
GTTGTGATGCTTTTGGTGCATCATTTCTTTTTTTGTATCTTGTCTCCTCT
TTCTTTTCTCCCCTCCTTGCCATGTCCGCCCTTCCTTCTTTGTTCATCGA
TTCCCCCCCTTCGTCTTTCTTTGTTTTTACATTTGTGGTGGCAATTCAAA
TGTACTTTAATTTAAAAATCGAAAGAAACTCACGCTTTCCGCTCCTGGTG
TTCCGATTCTTGGCTTCTGGCTGTTGCATCCAAGGAATCTCATCTGATAC
AAATAGACGGAGGAGGAGAGATGTAGGGCCGTATGAATATTTCTAAGGGT
TTTCCATCCATTCATGTGTCGGCGTCTGCTTCCGGCTCCGCCTCGTCATT
CCTCCCTTGCCCTTTCTCCCCTCCCTCCCTCCCTCCATACGCATTTCATA
TATATTCAAGCCTCCATTTATGCCTGCATCCCTCCGGCCTCCGCCCTTCC
CTCCGGAGG
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Coding sequence (CDS) from alignment at scaffold_110:13829..14387-

>mRNA_11270 ID=mRNA_11270|Name=jgi.p|Nanoce1779_2|615934|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_110:13829..14387- (Nannochloropsis oceanica)
ATGTCCGCCCTTCCTTCTTTGTTCATCGATTCCCCCCCTTCGTCTTTCTT
TGTTTTTACATTTGTGGTGGCAATTCAAATGTACTTTAATTTAAAAATCG
AAAGAAACTCACGCTTTCCGCTCCTGGTGTTCCGATTCTTGGCTTCTGGC
TGTTGCATCCAAGGAATCTCATCTGATACAAATAGACGGAGGAGGAGAGA
TGTAGGGCCGTATGAATATTTCTAA
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Synonyms
Publications