jgi.p|Nanoce1779_2|615945, mRNA_11273 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615945
Unique NamemRNA_11273
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_110:18488..19300 +

Link to JBrowse

Properties
Property NameValue
TranscriptId616031
TrackFilteredModels2
ProteinId615945
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:18488..19300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615945gene_11273Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615945mRNA_11273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11273CDS_11273Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11273 ID=mRNA_11273|Name=jgi.p|Nanoce1779_2|615945|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
AGTAGGTCATTCTATGGCTTTCTTTGGTGCTGACGCTCCGACGAGTGTCA
GGAGGACAATGTGGAGAAAGAGGAGGAGGTAGAGGGGTTGTTGGTGGTAG
CAGTAGCGCGGAAGAGGTGAAATAAAGTAAATAAATCAGGGAAAGGAAGG
TAAAGCATACGGGCGACGGTGAAGGGTCAAGAGCAGGAGCGATGGGTGTC
TTGTACGTAGAAAATCTCCCGGCAGGTCGCGCATGAGAGGAAAACCTACA
AAAGTATAGGGTAAGATGTCAAGGGGGCAGATGGGAGAGGCTGAAGGAAG
AGAAGGAAGGTACGCCCATAGTAATGATCTTTTCGGTGACTACTCGCGTC
GTGCAGGCAAGCTGACGGCTACACGTCGCCACAGCTGCAATCACGAGAAA
GGGATAATTTATCACGCATACTACACTGCATCTTCTGTTTGTTTTCTCTC
GCACTCCCCCTCCCCCCATAGAGGGTCTTGTTTTACATCTCACATCACCT
TCCAATTCAGTCACTCTGCTTCCCTAGATGTCATCATATGCGTTTCATAT
ATTCATGCCCCAGATACCCGTCCTTTTGCCGTTTCTCTCTCTCGTCCATC
TATATTCAGGTCGTTTCCAGTCCCACACACAGTTCTTTCATGGATTCTGT
CGCTTTTTCCCCCAGTATCATCAGCTGTCTTACTCCCCACGGCCTATGTT
TATATAAGTGGAAGAACCCAGAAGTAGAGTTAGGGTTAGGTAAATAGCGG
AAGAATTCCAGAGTGGGGCATTCAAGCTTCACAAGGGGCTCTGCTAAGGG
TAGCAGCAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|615945

>mRNA_11273-protein ID=mRNA_11273-protein|Name=jgi.p|Nanoce1779_2|615945|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MSRGQMGEAEGREGRYAHSNDLFGDYSRRAGKLTATRRHSCNHEKGIIYH
AYYTASSVCFLSHSPSPHRGSCFTSHITFQFSHSASLDVIICVSYIHAPD
TRPFAVSLSRPSIFRSFPVPHTVLSWILSLFPPVSSAVLLPTAYVYISGR
TQK*
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mRNA from alignment at scaffold_110:18488..19300+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11273 ID=mRNA_11273|Name=jgi.p|Nanoce1779_2|615945|organism=Nannochloropsis oceanica|type=mRNA|length=813bp|location=Sequence derived from alignment at scaffold_110:18488..19300+ (Nannochloropsis oceanica)
AGTAGGTCATTCTATGGCTTTCTTTGGTGCTGACGCTCCGACGAGTGTCA
GGAGGACAATGTGGAGAAAGAGGAGGAGGTAGAGGGGTTGTTGGTGGTAG
CAGTAGCGCGGAAGAGGTGAAATAAAGTAAATAAATCAGGGAAAGGAAGG
TAAAGCATACGGGCGACGGTGAAGGGTCAAGAGCAGGAGCGATGGGTGTC
TTGTACGTAGAAAATCTCCCGGCAGGTCGCGCATGAGAGGAAAACCTACA
AAAGTATAGGGTAAGATGTCAAGGGGGCAGATGGGAGAGGCTGAAGGAAG
AGAAGGAAGGTACGCCCATAGTAATGATCTTTTCGGTGACTACTCGCGTC
GTGCAGGCAAGCTGACGGCTACACGTCGCCACAGCTGCAATCACGAGAAA
GGGATAATTTATCACGCATACTACACTGCATCTTCTGTTTGTTTTCTCTC
GCACTCCCCCTCCCCCCATAGAGGGTCTTGTTTTACATCTCACATCACCT
TCCAATTCAGTCACTCTGCTTCCCTAGATGTCATCATATGCGTTTCATAT
ATTCATGCCCCAGATACCCGTCCTTTTGCCGTTTCTCTCTCTCGTCCATC
TATATTCAGGTCGTTTCCAGTCCCACACACAGTTCTTTCATGGATTCTGT
CGCTTTTTCCCCCAGTATCATCAGCTGTCTTACTCCCCACGGCCTATGTT
TATATAAGTGGAAGAACCCAGAAGTAGAGTTAGGGTTAGGTAAATAGCGG
AAGAATTCCAGAGTGGGGCATTCAAGCTTCACAAGGGGCTCTGCTAAGGG
TAGCAGCAGCAGC
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Coding sequence (CDS) from alignment at scaffold_110:18488..19300+

>mRNA_11273 ID=mRNA_11273|Name=jgi.p|Nanoce1779_2|615945|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_110:18488..19300+ (Nannochloropsis oceanica)
ATGTCAAGGGGGCAGATGGGAGAGGCTGAAGGAAGAGAAGGAAGGTACGC
CCATAGTAATGATCTTTTCGGTGACTACTCGCGTCGTGCAGGCAAGCTGA
CGGCTACACGTCGCCACAGCTGCAATCACGAGAAAGGGATAATTTATCAC
GCATACTACACTGCATCTTCTGTTTGTTTTCTCTCGCACTCCCCCTCCCC
CCATAGAGGGTCTTGTTTTACATCTCACATCACCTTCCAATTCAGTCACT
CTGCTTCCCTAGATGTCATCATATGCGTTTCATATATTCATGCCCCAGAT
ACCCGTCCTTTTGCCGTTTCTCTCTCTCGTCCATCTATATTCAGGTCGTT
TCCAGTCCCACACACAGTTCTTTCATGGATTCTGTCGCTTTTTCCCCCAG
TATCATCAGCTGTCTTACTCCCCACGGCCTATGTTTATATAAGTGGAAGA
ACCCAGAAGTAG
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Synonyms
Publications