jgi.p|Nanoce1779_2|534572, mRNA_11276 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534572
Unique NamemRNA_11276
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length756
Alignment locationscaffold_110:27939..28694 -

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Properties
Property NameValue
TranscriptId534658
TrackFilteredModels2
ProteinId534572
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:27939..28694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534572gene_11276Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11276CDS_11276Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534572mRNA_11276-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11276 ID=mRNA_11276|Name=jgi.p|Nanoce1779_2|534572|organism=Nannochloropsis oceanica|type=mRNA|length=756bp
ATGCCTTATACACAGATCATGCGGCCCTTCAGGGAAGGTCGAGCCTTTAA
GGTGATTGCGGGCCTGACAAATTTCGATCGCGACTCGGTCGGCCGCATCG
CGCGTGCCGCTGGCATGGGCGGGGCCACTCACTTGGACCTGGCCGCAGAC
CCCGAATTGGTGGCCCTGGCCAAAGCCCAGGCGCCCCGTGTGCGCACCAT
GGTCTCAGCCATCGATCCCGAGAAGTTCGTGCCCTGCGTGGAGGCGGGCG
TGGACATGATCGAGCTGGGCAACTTCGACGCCTTCTATTCCTCGGGCCTG
CGCTTCTCCTCCCTGGACATCCTGGATCTGACCAAGCGCACGCAGGCCTT
GTGTCCGCGCACGCCGCTCTCTGTGACCATCCCGCACGTGCTGGCCATGG
AGGAGCAGGCGCAGCTGGCCTTGTCTCTGGCTGGGCTAGGCGTGGACGTA
ATCCAGACGGAGGGCGCCCCCTCGATCTCCACAATGAGCACGGGCCTGAC
CGCCGCCATCGAGAAGGCCGCCCCCGCCCTGGCCGCCACATACGTGCTTT
CACGGGCGCTGGCTGGCAAAGGCACGCTTGTGATGGCGGCGTCGGGCATG
AACGAGGTGACGGCGCCGATGGCGCTGGTCTCGGGCGCGCAGGGCGTGGG
GGTGGGGACTGCCATCTCTGGCTTGGATTCGGAGGCCGCCATGGCCACCA
AAGTCCGCGAGATCGTGCGGGCCCTGCAGCGGAACAAGGTGCAGATGCAG
CATTAG
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protein sequence of jgi.p|Nanoce1779_2|534572

>mRNA_11276-protein ID=mRNA_11276-protein|Name=jgi.p|Nanoce1779_2|534572|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MPYTQIMRPFREGRAFKVIAGLTNFDRDSVGRIARAAGMGGATHLDLAAD
PELVALAKAQAPRVRTMVSAIDPEKFVPCVEAGVDMIELGNFDAFYSSGL
RFSSLDILDLTKRTQALCPRTPLSVTIPHVLAMEEQAQLALSLAGLGVDV
IQTEGAPSISTMSTGLTAAIEKAAPALAATYVLSRALAGKGTLVMAASGM
NEVTAPMALVSGAQGVGVGTAISGLDSEAAMATKVREIVRALQRNKVQMQ
H*
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mRNA from alignment at scaffold_110:27939..28694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11276 ID=mRNA_11276|Name=jgi.p|Nanoce1779_2|534572|organism=Nannochloropsis oceanica|type=mRNA|length=756bp|location=Sequence derived from alignment at scaffold_110:27939..28694- (Nannochloropsis oceanica)
ATGCCTTATACACAGATCATGCGGCCCTTCAGGGAAGGTCGAGCCTTTAA
GGTGATTGCGGGCCTGACAAATTTCGATCGCGACTCGGTCGGCCGCATCG
CGCGTGCCGCTGGCATGGGCGGGGCCACTCACTTGGACCTGGCCGCAGAC
CCCGAATTGGTGGCCCTGGCCAAAGCCCAGGCGCCCCGTGTGCGCACCAT
GGTCTCAGCCATCGATCCCGAGAAGTTCGTGCCCTGCGTGGAGGCGGGCG
TGGACATGATCGAGCTGGGCAACTTCGACGCCTTCTATTCCTCGGGCCTG
CGCTTCTCCTCCCTGGACATCCTGGATCTGACCAAGCGCACGCAGGCCTT
GTGTCCGCGCACGCCGCTCTCTGTGACCATCCCGCACGTGCTGGCCATGG
AGGAGCAGGCGCAGCTGGCCTTGTCTCTGGCTGGGCTAGGCGTGGACGTA
ATCCAGACGGAGGGCGCCCCCTCGATCTCCACAATGAGCACGGGCCTGAC
CGCCGCCATCGAGAAGGCCGCCCCCGCCCTGGCCGCCACATACGTGCTTT
CACGGGCGCTGGCTGGCAAAGGCACGCTTGTGATGGCGGCGTCGGGCATG
AACGAGGTGACGGCGCCGATGGCGCTGGTCTCGGGCGCGCAGGGCGTGGG
GGTGGGGACTGCCATCTCTGGCTTGGATTCGGAGGCCGCCATGGCCACCA
AAGTCCGCGAGATCGTGCGGGCCCTGCAGCGGAACAAGGTGCAGATGCAG
CATTAG
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Coding sequence (CDS) from alignment at scaffold_110:27939..28694-

>mRNA_11276 ID=mRNA_11276|Name=jgi.p|Nanoce1779_2|534572|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_110:27939..28694- (Nannochloropsis oceanica)
ATGCCTTATACACAGATCATGCGGCCCTTCAGGGAAGGTCGAGCCTTTAA
GGTGATTGCGGGCCTGACAAATTTCGATCGCGACTCGGTCGGCCGCATCG
CGCGTGCCGCTGGCATGGGCGGGGCCACTCACTTGGACCTGGCCGCAGAC
CCCGAATTGGTGGCCCTGGCCAAAGCCCAGGCGCCCCGTGTGCGCACCAT
GGTCTCAGCCATCGATCCCGAGAAGTTCGTGCCCTGCGTGGAGGCGGGCG
TGGACATGATCGAGCTGGGCAACTTCGACGCCTTCTATTCCTCGGGCCTG
CGCTTCTCCTCCCTGGACATCCTGGATCTGACCAAGCGCACGCAGGCCTT
GTGTCCGCGCACGCCGCTCTCTGTGACCATCCCGCACGTGCTGGCCATGG
AGGAGCAGGCGCAGCTGGCCTTGTCTCTGGCTGGGCTAGGCGTGGACGTA
ATCCAGACGGAGGGCGCCCCCTCGATCTCCACAATGAGCACGGGCCTGAC
CGCCGCCATCGAGAAGGCCGCCCCCGCCCTGGCCGCCACATACGTGCTTT
CACGGGCGCTGGCTGGCAAAGGCACGCTTGTGATGGCGGCGTCGGGCATG
AACGAGGTGACGGCGCCGATGGCGCTGGTCTCGGGCGCGCAGGGCGTGGG
GGTGGGGACTGCCATCTCTGGCTTGGATTCGGAGGCCGCCATGGCCACCA
AAGTCCGCGAGATCGTGCGGGCCCTGCAGCGGAACAAGGTGCAGATGCAG
CATTAG
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Synonyms
Publications