scaffold_71, scaffold_71 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_71
Unique Name	scaffold_71
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	73293
Alignment location	jgi.p\|Nanoce1779_2\|404650:8569..12575 -
Alignment location	jgi.p\|Nanoce1779_2\|404650:8569..12575 -
Alignment location	CDS_10900:12118..12284 -
Alignment location	CDS_10900:11886..11963 -
Alignment location	CDS_10900:11490..11572 -
Alignment location	CDS_10900:11164..11244 -
Alignment location	CDS_10900:10963..11044 -
Alignment location	CDS_10900:10655..10745 -
Alignment location	CDS_10900:10468..10554 -
Alignment location	CDS_10900:10098..10205 -
Alignment location	CDS_10900:9875..9941 -
Alignment location	CDS_10900:9624..9659 -
Alignment location	CDS_10900:9198..9403 -
Alignment location	jgi.p\|Nanoce1779_2\|404942:31978..36662 +
Alignment location	jgi.p\|Nanoce1779_2\|404942:31978..36662 +
Alignment location	CDS_10907:32021..32071 +
Alignment location	CDS_10907:32148..32395 +
Alignment location	CDS_10907:32616..32909 +
Alignment location	CDS_10907:33125..33212 +
Alignment location	CDS_10907:33451..33616 +
Alignment location	CDS_10907:33880..33998 +
Alignment location	CDS_10907:34324..34455 +
Alignment location	CDS_10907:34684..34799 +
Alignment location	CDS_10907:35036..35087 +
Alignment location	CDS_10907:35208..35303 +
Alignment location	CDS_10907:35447..35510 +
Alignment location	CDS_10907:35789..35878 +
Alignment location	CDS_10907:36009..36106 +
Alignment location	CDS_10907:36255..36465 +
Alignment location	CDS_10907:36545..36609 +
Alignment location	jgi.p\|Nanoce1779_2\|570090:55621..56711 +
Alignment location	jgi.p\|Nanoce1779_2\|570090:55621..56711 +
Alignment location	CDS_10916:55621..56662 +
Alignment location	CDS_10916:56704..56711 +
Alignment location	jgi.p\|Nanoce1779_2\|570091:57231..57587 -
Alignment location	jgi.p\|Nanoce1779_2\|570091:57231..57587 -
Alignment location	CDS_10917:57231..57587 -
Alignment location	jgi.p\|Nanoce1779_2\|613111:1..1118 -
Alignment location	jgi.p\|Nanoce1779_2\|613111:1..1118 -
Alignment location	CDS_10898:454..1004 -
Alignment location	CDS_10898:112..166 -
Alignment location	jgi.p\|Nanoce1779_2\|613154:26924..27882 -
Alignment location	jgi.p\|Nanoce1779_2\|613154:26924..27882 -
Alignment location	CDS_10904:26960..27559 -
Alignment location	jgi.p\|Nanoce1779_2\|613155:28222..29214 +
Alignment location	jgi.p\|Nanoce1779_2\|613155:28222..29214 +
Alignment location	CDS_10905:28287..28499 +
Alignment location	jgi.p\|Nanoce1779_2\|613165:37879..39448 +
Alignment location	jgi.p\|Nanoce1779_2\|613165:37879..39448 +
Alignment location	CDS_10908:37886..37984 +
Alignment location	CDS_10908:38270..38332 +
Alignment location	CDS_10908:38479..38542 +
Alignment location	CDS_10908:38702..38775 +
Alignment location	jgi.p\|Nanoce1779_2\|613167:39343..40143 -
Alignment location	jgi.p\|Nanoce1779_2\|613167:39343..40143 -
Alignment location	CDS_10909:39574..39795 -
Alignment location	jgi.p\|Nanoce1779_2\|613179:45332..45777 -
Alignment location	jgi.p\|Nanoce1779_2\|613179:45332..45777 -
Alignment location	CDS_10912:45446..45712 -
Alignment location	jgi.p\|Nanoce1779_2\|613181:46155..47083 +
Alignment location	jgi.p\|Nanoce1779_2\|613181:46155..47083 +
Alignment location	CDS_10913:46173..46414 +
Alignment location	CDS_10913:46537..46832 +
Alignment location	CDS_10913:47015..47028 +
Alignment location	jgi.p\|Nanoce1779_2\|613200:60721..64150 -
Alignment location	jgi.p\|Nanoce1779_2\|613200:60721..64150 -
Alignment location	CDS_10918:64034..64119 -
Alignment location	CDS_10918:63832..63881 -
Alignment location	CDS_10918:63528..63660 -
Alignment location	CDS_10918:63233..63316 -
Alignment location	CDS_10918:62923..63097 -
Alignment location	CDS_10918:62653..62745 -
Alignment location	CDS_10918:62249..62354 -
Alignment location	CDS_10918:62019..62096 -
Alignment location	CDS_10918:61358..61843 -
Alignment location	CDS_10918:61106..61215 -
Alignment location	CDS_10918:60905..60949 -
Alignment location	jgi.p\|Nanoce1779_2\|613206:66201..70889 -
Alignment location	jgi.p\|Nanoce1779_2\|613206:66201..70889 -
Alignment location	CDS_10919:70537..70596 -
Alignment location	CDS_10919:70287..70378 -
Alignment location	CDS_10919:70052..70125 -
Alignment location	CDS_10919:69822..69909 -
Alignment location	CDS_10919:69613..69686 -
Alignment location	CDS_10919:68814..69450 -
Alignment location	CDS_10919:68389..68630 -
Alignment location	CDS_10919:68084..68229 -
Alignment location	CDS_10919:67745..67891 -
Alignment location	jgi.p\|Nanoce1779_2\|613209:72244..73226 +
Alignment location	jgi.p\|Nanoce1779_2\|613209:72244..73226 +
Alignment location	CDS_10920:72363..72784 +
Alignment location	CDS_10920:73026..73143 +
Alignment location	jgi.p\|Nanoce1779_2\|675052:140..3461 +
Alignment location	jgi.p\|Nanoce1779_2\|675052:140..3461 +
Alignment location	CDS_10899:1836..3098 +
Alignment location	CDS_10899:3213..3461 +
Alignment location	jgi.p\|Nanoce1779_2\|675057:20741..22100 -
Alignment location	jgi.p\|Nanoce1779_2\|675057:20741..22100 -
Alignment location	CDS_10901:21979..22095 -
Alignment location	CDS_10901:21738..21900 -
Alignment location	CDS_10901:21600..21635 -
Alignment location	CDS_10901:21417..21522 -
Alignment location	CDS_10901:21215..21317 -
Alignment location	CDS_10901:21044..21131 -
Alignment location	CDS_10901:20887..20945 -
Alignment location	jgi.p\|Nanoce1779_2\|675063:40287..41660 -
Alignment location	jgi.p\|Nanoce1779_2\|675063:40287..41660 -
Alignment location	CDS_10910:40971..41381 -
Alignment location	CDS_10910:40725..40844 -
Alignment location	jgi.p\|Nanoce1779_2\|675065:48008..53220 -
Alignment location	jgi.p\|Nanoce1779_2\|675065:48008..53220 -
Alignment location	CDS_10914:52983..53216 -
Alignment location	CDS_10914:52607..52778 -
Alignment location	CDS_10914:52013..52454 -
Alignment location	CDS_10914:51627..51838 -
Alignment location	CDS_10914:50928..51482 -
Alignment location	CDS_10914:50622..50762 -
Alignment location	CDS_10914:50044..50427 -
Alignment location	CDS_10914:49747..49842 -
Alignment location	CDS_10914:49509..49618 -
Alignment location	CDS_10914:49202..49300 -
Alignment location	CDS_10914:48872..49040 -
Alignment location	CDS_10914:48689..48772 -
Alignment location	CDS_10914:48500..48589 -
Alignment location	CDS_10914:48254..48310 -
Alignment location	CDS_10914:48008..48120 -
Alignment location	jgi.p\|Nanoce1779_2\|404650:9198..12284 -
Alignment location	jgi.p\|Nanoce1779_2\|404942:32021..36609 +
Alignment location	jgi.p\|Nanoce1779_2\|570090:55621..56711 +
Alignment location	jgi.p\|Nanoce1779_2\|570091:57231..57587 -
Alignment location	jgi.p\|Nanoce1779_2\|613111:112..1004 -
Alignment location	jgi.p\|Nanoce1779_2\|613154:26960..27559 -
Alignment location	jgi.p\|Nanoce1779_2\|613155:28287..28499 +
Alignment location	jgi.p\|Nanoce1779_2\|613165:37886..38775 +
Alignment location	jgi.p\|Nanoce1779_2\|613167:39574..39795 -
Alignment location	jgi.p\|Nanoce1779_2\|613179:45446..45712 -
Alignment location	jgi.p\|Nanoce1779_2\|613181:46173..47028 +
Alignment location	jgi.p\|Nanoce1779_2\|613200:60905..64119 -
Alignment location	jgi.p\|Nanoce1779_2\|613206:67745..70596 -
Alignment location	jgi.p\|Nanoce1779_2\|613209:72363..73143 +
Alignment location	jgi.p\|Nanoce1779_2\|675052:1836..3461 +
Alignment location	jgi.p\|Nanoce1779_2\|675057:20887..22095 -
Alignment location	jgi.p\|Nanoce1779_2\|675063:40725..41381 -
Alignment location	jgi.p\|Nanoce1779_2\|675065:48008..53216 -
Alignment location	ncniL094:141..73226 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|404650	gene	jgi.p\|Nanoce1779_2\|404650:8569..12575 -
jgi.p\|Nanoce1779_2\|404650	mRNA	jgi.p\|Nanoce1779_2\|404650:8569..12575 -
CDS_10900	CDS	CDS_10900:12118..12284 -
CDS_10900	CDS	CDS_10900:11886..11963 -
CDS_10900	CDS	CDS_10900:11490..11572 -
CDS_10900	CDS	CDS_10900:11164..11244 -
CDS_10900	CDS	CDS_10900:10963..11044 -
CDS_10900	CDS	CDS_10900:10655..10745 -
CDS_10900	CDS	CDS_10900:10468..10554 -
CDS_10900	CDS	CDS_10900:10098..10205 -
CDS_10900	CDS	CDS_10900:9875..9941 -
CDS_10900	CDS	CDS_10900:9624..9659 -
CDS_10900	CDS	CDS_10900:9198..9403 -
jgi.p\|Nanoce1779_2\|404942	gene	jgi.p\|Nanoce1779_2\|404942:31978..36662 +
jgi.p\|Nanoce1779_2\|404942	mRNA	jgi.p\|Nanoce1779_2\|404942:31978..36662 +
CDS_10907	CDS	CDS_10907:32021..32071 +
CDS_10907	CDS	CDS_10907:32148..32395 +
CDS_10907	CDS	CDS_10907:32616..32909 +
CDS_10907	CDS	CDS_10907:33125..33212 +
CDS_10907	CDS	CDS_10907:33451..33616 +
CDS_10907	CDS	CDS_10907:33880..33998 +
CDS_10907	CDS	CDS_10907:34324..34455 +
CDS_10907	CDS	CDS_10907:34684..34799 +
CDS_10907	CDS	CDS_10907:35036..35087 +
CDS_10907	CDS	CDS_10907:35208..35303 +
CDS_10907	CDS	CDS_10907:35447..35510 +
CDS_10907	CDS	CDS_10907:35789..35878 +
CDS_10907	CDS	CDS_10907:36009..36106 +
CDS_10907	CDS	CDS_10907:36255..36465 +
CDS_10907	CDS	CDS_10907:36545..36609 +
jgi.p\|Nanoce1779_2\|570090	gene	jgi.p\|Nanoce1779_2\|570090:55621..56711 +
jgi.p\|Nanoce1779_2\|570090	mRNA	jgi.p\|Nanoce1779_2\|570090:55621..56711 +
CDS_10916	CDS	CDS_10916:55621..56662 +
CDS_10916	CDS	CDS_10916:56704..56711 +
jgi.p\|Nanoce1779_2\|570091	gene	jgi.p\|Nanoce1779_2\|570091:57231..57587 -
jgi.p\|Nanoce1779_2\|570091	mRNA	jgi.p\|Nanoce1779_2\|570091:57231..57587 -
CDS_10917	CDS	CDS_10917:57231..57587 -
jgi.p\|Nanoce1779_2\|613111	gene	jgi.p\|Nanoce1779_2\|613111:1..1118 -
jgi.p\|Nanoce1779_2\|613111	mRNA	jgi.p\|Nanoce1779_2\|613111:1..1118 -
CDS_10898	CDS	CDS_10898:454..1004 -
CDS_10898	CDS	CDS_10898:112..166 -
jgi.p\|Nanoce1779_2\|613154	gene	jgi.p\|Nanoce1779_2\|613154:26924..27882 -
jgi.p\|Nanoce1779_2\|613154	mRNA	jgi.p\|Nanoce1779_2\|613154:26924..27882 -
CDS_10904	CDS	CDS_10904:26960..27559 -
jgi.p\|Nanoce1779_2\|613155	gene	jgi.p\|Nanoce1779_2\|613155:28222..29214 +
jgi.p\|Nanoce1779_2\|613155	mRNA	jgi.p\|Nanoce1779_2\|613155:28222..29214 +
CDS_10905	CDS	CDS_10905:28287..28499 +
jgi.p\|Nanoce1779_2\|613165	gene	jgi.p\|Nanoce1779_2\|613165:37879..39448 +
jgi.p\|Nanoce1779_2\|613165	mRNA	jgi.p\|Nanoce1779_2\|613165:37879..39448 +
CDS_10908	CDS	CDS_10908:37886..37984 +
CDS_10908	CDS	CDS_10908:38270..38332 +
CDS_10908	CDS	CDS_10908:38479..38542 +
CDS_10908	CDS	CDS_10908:38702..38775 +
jgi.p\|Nanoce1779_2\|613167	gene	jgi.p\|Nanoce1779_2\|613167:39343..40143 -
jgi.p\|Nanoce1779_2\|613167	mRNA	jgi.p\|Nanoce1779_2\|613167:39343..40143 -
CDS_10909	CDS	CDS_10909:39574..39795 -
jgi.p\|Nanoce1779_2\|613179	gene	jgi.p\|Nanoce1779_2\|613179:45332..45777 -
jgi.p\|Nanoce1779_2\|613179	mRNA	jgi.p\|Nanoce1779_2\|613179:45332..45777 -
CDS_10912	CDS	CDS_10912:45446..45712 -
jgi.p\|Nanoce1779_2\|613181	gene	jgi.p\|Nanoce1779_2\|613181:46155..47083 +
jgi.p\|Nanoce1779_2\|613181	mRNA	jgi.p\|Nanoce1779_2\|613181:46155..47083 +
CDS_10913	CDS	CDS_10913:46173..46414 +
CDS_10913	CDS	CDS_10913:46537..46832 +
CDS_10913	CDS	CDS_10913:47015..47028 +
jgi.p\|Nanoce1779_2\|613200	gene	jgi.p\|Nanoce1779_2\|613200:60721..64150 -
jgi.p\|Nanoce1779_2\|613200	mRNA	jgi.p\|Nanoce1779_2\|613200:60721..64150 -
CDS_10918	CDS	CDS_10918:64034..64119 -
CDS_10918	CDS	CDS_10918:63832..63881 -
CDS_10918	CDS	CDS_10918:63528..63660 -
CDS_10918	CDS	CDS_10918:63233..63316 -
CDS_10918	CDS	CDS_10918:62923..63097 -
CDS_10918	CDS	CDS_10918:62653..62745 -
CDS_10918	CDS	CDS_10918:62249..62354 -
CDS_10918	CDS	CDS_10918:62019..62096 -
CDS_10918	CDS	CDS_10918:61358..61843 -
CDS_10918	CDS	CDS_10918:61106..61215 -
CDS_10918	CDS	CDS_10918:60905..60949 -
jgi.p\|Nanoce1779_2\|613206	gene	jgi.p\|Nanoce1779_2\|613206:66201..70889 -
jgi.p\|Nanoce1779_2\|613206	mRNA	jgi.p\|Nanoce1779_2\|613206:66201..70889 -
CDS_10919	CDS	CDS_10919:70537..70596 -
CDS_10919	CDS	CDS_10919:70287..70378 -
CDS_10919	CDS	CDS_10919:70052..70125 -
CDS_10919	CDS	CDS_10919:69822..69909 -
CDS_10919	CDS	CDS_10919:69613..69686 -
CDS_10919	CDS	CDS_10919:68814..69450 -
CDS_10919	CDS	CDS_10919:68389..68630 -
CDS_10919	CDS	CDS_10919:68084..68229 -
CDS_10919	CDS	CDS_10919:67745..67891 -
jgi.p\|Nanoce1779_2\|613209	gene	jgi.p\|Nanoce1779_2\|613209:72244..73226 +
jgi.p\|Nanoce1779_2\|613209	mRNA	jgi.p\|Nanoce1779_2\|613209:72244..73226 +
CDS_10920	CDS	CDS_10920:72363..72784 +
CDS_10920	CDS	CDS_10920:73026..73143 +
jgi.p\|Nanoce1779_2\|675052	gene	jgi.p\|Nanoce1779_2\|675052:140..3461 +
jgi.p\|Nanoce1779_2\|675052	mRNA	jgi.p\|Nanoce1779_2\|675052:140..3461 +
CDS_10899	CDS	CDS_10899:1836..3098 +
CDS_10899	CDS	CDS_10899:3213..3461 +
jgi.p\|Nanoce1779_2\|675057	gene	jgi.p\|Nanoce1779_2\|675057:20741..22100 -
jgi.p\|Nanoce1779_2\|675057	mRNA	jgi.p\|Nanoce1779_2\|675057:20741..22100 -
CDS_10901	CDS	CDS_10901:21979..22095 -
CDS_10901	CDS	CDS_10901:21738..21900 -
CDS_10901	CDS	CDS_10901:21600..21635 -
CDS_10901	CDS	CDS_10901:21417..21522 -
CDS_10901	CDS	CDS_10901:21215..21317 -
CDS_10901	CDS	CDS_10901:21044..21131 -
CDS_10901	CDS	CDS_10901:20887..20945 -
jgi.p\|Nanoce1779_2\|675063	gene	jgi.p\|Nanoce1779_2\|675063:40287..41660 -
jgi.p\|Nanoce1779_2\|675063	mRNA	jgi.p\|Nanoce1779_2\|675063:40287..41660 -
CDS_10910	CDS	CDS_10910:40971..41381 -
CDS_10910	CDS	CDS_10910:40725..40844 -
jgi.p\|Nanoce1779_2\|675065	gene	jgi.p\|Nanoce1779_2\|675065:48008..53220 -
jgi.p\|Nanoce1779_2\|675065	mRNA	jgi.p\|Nanoce1779_2\|675065:48008..53220 -
CDS_10914	CDS	CDS_10914:52983..53216 -
CDS_10914	CDS	CDS_10914:52607..52778 -
CDS_10914	CDS	CDS_10914:52013..52454 -
CDS_10914	CDS	CDS_10914:51627..51838 -
CDS_10914	CDS	CDS_10914:50928..51482 -
CDS_10914	CDS	CDS_10914:50622..50762 -
CDS_10914	CDS	CDS_10914:50044..50427 -
CDS_10914	CDS	CDS_10914:49747..49842 -
CDS_10914	CDS	CDS_10914:49509..49618 -
CDS_10914	CDS	CDS_10914:49202..49300 -
CDS_10914	CDS	CDS_10914:48872..49040 -
CDS_10914	CDS	CDS_10914:48689..48772 -
CDS_10914	CDS	CDS_10914:48500..48589 -
CDS_10914	CDS	CDS_10914:48254..48310 -
CDS_10914	CDS	CDS_10914:48008..48120 -
jgi.p\|Nanoce1779_2\|404650	polypeptide	jgi.p\|Nanoce1779_2\|404650:9198..12284 -
jgi.p\|Nanoce1779_2\|404942	polypeptide	jgi.p\|Nanoce1779_2\|404942:32021..36609 +
jgi.p\|Nanoce1779_2\|570090	polypeptide	jgi.p\|Nanoce1779_2\|570090:55621..56711 +
jgi.p\|Nanoce1779_2\|570091	polypeptide	jgi.p\|Nanoce1779_2\|570091:57231..57587 -
jgi.p\|Nanoce1779_2\|613111	polypeptide	jgi.p\|Nanoce1779_2\|613111:112..1004 -
jgi.p\|Nanoce1779_2\|613154	polypeptide	jgi.p\|Nanoce1779_2\|613154:26960..27559 -
jgi.p\|Nanoce1779_2\|613155	polypeptide	jgi.p\|Nanoce1779_2\|613155:28287..28499 +
jgi.p\|Nanoce1779_2\|613165	polypeptide	jgi.p\|Nanoce1779_2\|613165:37886..38775 +
jgi.p\|Nanoce1779_2\|613167	polypeptide	jgi.p\|Nanoce1779_2\|613167:39574..39795 -
jgi.p\|Nanoce1779_2\|613179	polypeptide	jgi.p\|Nanoce1779_2\|613179:45446..45712 -
jgi.p\|Nanoce1779_2\|613181	polypeptide	jgi.p\|Nanoce1779_2\|613181:46173..47028 +
jgi.p\|Nanoce1779_2\|613200	polypeptide	jgi.p\|Nanoce1779_2\|613200:60905..64119 -
jgi.p\|Nanoce1779_2\|613206	polypeptide	jgi.p\|Nanoce1779_2\|613206:67745..70596 -
jgi.p\|Nanoce1779_2\|613209	polypeptide	jgi.p\|Nanoce1779_2\|613209:72363..73143 +
jgi.p\|Nanoce1779_2\|675052	polypeptide	jgi.p\|Nanoce1779_2\|675052:1836..3461 +
jgi.p\|Nanoce1779_2\|675057	polypeptide	jgi.p\|Nanoce1779_2\|675057:20887..22095 -
jgi.p\|Nanoce1779_2\|675063	polypeptide	jgi.p\|Nanoce1779_2\|675063:40725..41381 -
jgi.p\|Nanoce1779_2\|675065	polypeptide	jgi.p\|Nanoce1779_2\|675065:48008..53216 -
ncniL094	syntenic_region	ncniL094:141..73226 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications