jgi.p|Nanoce1779_2|613165, mRNA_10908 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613165
Unique NamemRNA_10908
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length980
Alignment locationscaffold_71:37879..39448 +

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Properties
Property NameValue
TranscriptId613251
TrackFilteredModels2
ProteinId613165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:37879..39448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613165gene_10908Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613165mRNA_10908-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10908CDS_10908Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10908 ID=mRNA_10908|Name=jgi.p|Nanoce1779_2|613165|organism=Nannochloropsis oceanica|type=mRNA|length=980bp
GGAGAAGATGTTCGAGCAGTTTGGAGGCATGCCGGGAGGAGGAGGAGGGG
GAGGGATGGGGGGAGGAGGGGCAGGGCCGGGGGCGATGCCGCAGAAGGAG
ATGGAGGAGACGCTCGAGGCCCTCAAGGCCGTGGTGCAGCAAGGCGGGCT
GTCGGAACAAGACATGGAGGAGCTCCGCCAAGCCTGCAAGTCGCAGGGCG
TGGACCTGGAAGACCTTGTCCGTACAATGGAAGGCCTGTCGGCGGAAATG
CCGCCCGAAAGCCAGGAGCTGACGAAGATGTTCAAGCAGGCCTTGAACCG
CAGTTAGGGAGGGAAGGAAGGAAGGATGAAGGGAAGGAAGCAGGGAGGGA
GAGTAGAGAGCCCTCTTTCTCTTTCTTCTTTGGCAAAAAGTGTCGGTAGG
AAGGGAGAAAAAGGAGATAAGAACTGTCGGTTTATTTGGGTGGGACAGAG
GGATTAAGAGGTCTTGTTCAGTCGAAGGATTTCATTTGTTATTATGCACA
CGGATTTGGAAGGGCAGGAGGGAGGGTAGCAGGTATTTGTTGTTTGTTGT
GAGCTTGTTGGGTCGGGGTGGTGCGCGCTGGTAGTGGTGTTTGTTTAAGA
GAGAAAGCGCAGCAGACAGCAGCGAGAGCAAGACAAGGAGAAAGGAAAGA
AGGAGGACAAGAAGAAATTCATAGAGCAATCAAGAGAGATGAACAGAGTG
GACGAGAGCGAGGGAAACGGGAGAGAGTTTGAGAGAGAGAGAGATGACAT
TAAAAAAGCAAACGGTAAATGGCAAATAAAAGGGAGGAGGGGAGAGAGGT
GGGGAGGGGGGGCAAGACGAGAAAAGTCACATTACGGATATAAGACAAAG
CGAAAGGAAAGATGCTAGTACTAACAAGAGAAAAGAAGAAGAGGAGAAGA
GAAAGAAGAAAAAGAAGAAGAACTTGGTCCAATTTCCCACCATTCTCCCA
CGCATGGCCAAAAAGTATAGGTACGTAAAC
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protein sequence of jgi.p|Nanoce1779_2|613165

>mRNA_10908-protein ID=mRNA_10908-protein|Name=jgi.p|Nanoce1779_2|613165|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MFEQFGGMPGGGGGGGMGGGGAGPGAMPQKEMEETLEALKAVVQQGGLSE
QDMEELRQACKSQGVDLEDLVRTMEGLSAEMPPESQELTKMFKQALNRS*
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mRNA from alignment at scaffold_71:37879..39448+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10908 ID=mRNA_10908|Name=jgi.p|Nanoce1779_2|613165|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp|location=Sequence derived from alignment at scaffold_71:37879..39448+ (Nannochloropsis oceanica)
GGAGAAGATGTTCGAGCAGTTTGGAGGCATGCCGGGAGGAGGAGGAGGGG
GAGGGATGGGGGGAGGAGGGGCAGGGCCGGGGGCGATGCCGCAGAAGGAG
ATGGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGAGTAGATTGTAGATGTTTTTTTGTGGGTCCTTTTTTGAAT
TGGAAGGAAGGAGGGAGGGGGGGAGGGAAGGATGGGGGAAGGACAGAAAA
GATACTCATTTGTTGTCGTGCTTGGTTGTTGTGACCGCACACACACCCCA
TCGAAGACTCACATGTTGTTGTAGCTGCTGTTGATGTTGTCGCGGTTGTT
GTAATCGTCATTGTGACCACACACTTACACACACTTCACAGGAGACGCTC
GAGGCCCTCAAGGCCGTGGTGCAGCAAGGCGGGCTGTCGGAACAAGACAT
GGAGGTGAGGGAGGGAGGGAAGGGGGGAGGGTCACCATCATCTGCGCTCT
CCTCGGAGGCTTTTCGGAGGATAGGAGGGAGGGAGAGAAGGAAGGAAGGA
AGAACACCCACTAACCTCTTTCATTTAATCCACAATCAACTAATTTATAG
GAGCTCCGCCAAGCCTGCAAGTCGCAGGGCGTGGACCTGGAAGACCTTGT
CCGTACAATGGAAGGTAGGGAGGGAGGGAAGGAGGGAGGGAGCGAGAGGG
GGAGAGGGGGAGGGATAGCATCGATTACTAGAACGAGTCAGCGATACTCC
ATGTCACACACACCTGCGCTCACGCCTTTTCCTCCTTCCTTCCTCCCTCC
CTCCCTCCCTCCATCCCTTCTAGGCCTGTCGGCGGAAATGCCGCCCGAAA
GCCAGGAGCTGACGAAGATGTTCAAGCAGGCCTTGAACCGCAGTTAGGGA
GGGAAGGAAGGAAGGATGAAGGGAAGGAAGCAGGGAGGGAGAGTAGAGAG
CCCTCTTTCTCTTTCTTCTTTGGCAAAAAGTGTCGGTAGGAAGGGAGAAA
AAGGAGATAAGAACTGTCGGTTTATTTGGGTGGGACAGAGGGATTAAGAG
GTCTTGTTCAGTCGAAGGATTTCATTTGTTATTATGCACACGGATTTGGA
AGGGCAGGAGGGAGGGTAGCAGGTATTTGTTGTTTGTTGTGAGCTTGTTG
GGTCGGGGTGGTGCGCGCTGGTAGTGGTGTTTGTTTAAGAGAGAAAGCGC
AGCAGACAGCAGCGAGAGCAAGACAAGGAGAAAGGAAAGAAGGAGGACAA
GAAGAAATTCATAGAGCAATCAAGAGAGATGAACAGAGTGGACGAGAGCG
AGGGAAACGGGAGAGAGTTTGAGAGAGAGAGAGATGACATTAAAAAAGCA
AACGGTAAATGGCAAATAAAAGGGAGGAGGGGAGAGAGGTGGGGAGGGGG
GGCAAGACGAGAAAAGTCACATTACGGATATAAGACAAAGCGAAAGGAAA
GATGCTAGTACTAACAAGAGAAAAGAAGAAGAGGAGAAGAGAAAGAAGAA
AAAGAAGAAGAACTTGGTCCAATTTCCCACCATTCTCCCACGCATGGCCA
AAAAGTATAGGTACGTAAAC
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Coding sequence (CDS) from alignment at scaffold_71:37879..39448+

>mRNA_10908 ID=mRNA_10908|Name=jgi.p|Nanoce1779_2|613165|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_71:37879..39448+ (Nannochloropsis oceanica)
ATGTTCGAGCAGTTTGGAGGCATGCCGGGAGGAGGAGGAGGGGGAGGGAT
GGGGGGAGGAGGGGCAGGGCCGGGGGCGATGCCGCAGAAGGAGATGGAGG
AGACGCTCGAGGCCCTCAAGGCCGTGGTGCAGCAAGGCGGGCTGTCGGAA
CAAGACATGGAGGAGCTCCGCCAAGCCTGCAAGTCGCAGGGCGTGGACCT
GGAAGACCTTGTCCGTACAATGGAAGGCCTGTCGGCGGAAATGCCGCCCG
AAAGCCAGGAGCTGACGAAGATGTTCAAGCAGGCCTTGAACCGCAGTTAG
ATGTTCGAGCAGTTTGGAGGCATGCCGGGAGGAGGAGGAGGGGGAGGGAT
GGGGGGAGGAGGGGCAGGGCCGGGGGCGATGCCGCAGAAGGAGATGGAGG
AGACGCTCGAGGCCCTCAAGGCCGTGGTGCAGCAAGGCGGGCTGTCGGAA
CAAGACATGGAGGAGCTCCGCCAAGCCTGCAAGTCGCAGGGCGTGGACCT
GGAAGACCTTGTCCGTACAATGGAAGGCCTGTCGGCGGAAATGCCGCCCG
AAAGCCAGGAGCTGACGAAGATGTTCAAGCAGGCCTTGAACCGCAGTTAG
ATGTTCGAGCAGTTTGGAGGCATGCCGGGAGGAGGAGGAGGGGGAGGGAT
GGGGGGAGGAGGGGCAGGGCCGGGGGCGATGCCGCAGAAGGAGATGGAGG
AGACGCTCGAGGCCCTCAAGGCCGTGGTGCAGCAAGGCGGGCTGTCGGAA
CAAGACATGGAGGAGCTCCGCCAAGCCTGCAAGTCGCAGGGCGTGGACCT
GGAAGACCTTGTCCGTACAATGGAAGGCCTGTCGGCGGAAATGCCGCCCG
AAAGCCAGGAGCTGACGAAGATGTTCAAGCAGGCCTTGAACCGCAGTTAG
ATGTTCGAGCAGTTTGGAGGCATGCCGGGAGGAGGAGGAGGGGGAGGGAT
GGGGGGAGGAGGGGCAGGGCCGGGGGCGATGCCGCAGAAGGAGATGGAGG
AGACGCTCGAGGCCCTCAAGGCCGTGGTGCAGCAAGGCGGGCTGTCGGAA
CAAGACATGGAGGAGCTCCGCCAAGCCTGCAAGTCGCAGGGCGTGGACCT
GGAAGACCTTGTCCGTACAATGGAAGGCCTGTCGGCGGAAATGCCGCCCG
AAAGCCAGGAGCTGACGAAGATGTTCAAGCAGGCCTTGAACCGCAGTTAG
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Synonyms
Publications