jgi.p|Nanoce1779_2|570090, mRNA_10916 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|570090
Unique Name	mRNA_10916
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1050
Alignment location	scaffold_71:55621..56711 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	570176
Track	FilteredModels2
ProteinId	570090

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_71	supercontig	scaffold_71:55621..56711 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|570090	gene_10916	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|570090	mRNA_10916-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10916	CDS_10916	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_71:55621..56711+
coding sequence from alignment at scaffold_71:55621..56711+

mRNA sequence

>mRNA_10916 ID=mRNA_10916|Name=jgi.p|Nanoce1779_2|570090|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGGCGATTGAGGAGCAGACAAAGCACCAGCATCTGCCGAATGGACTGCT
GCAGGGCGTGGAATGCATGGGTGGCCCGGGCAGCACCAGCACGGAGGAGG
CGGACGACGACGATCAGGACGAGGATGGAGAGGAGGGAGAGGAGGAAGGG
GAAGAGCGGCATACGCAGGCCATCACATGGACCAACTGTGGTAGACAGGT
CAGCAAGAGGCACGCTGCCAATTCACCCGTCGGCATGAAGAGCAGCAGCA
AGAAGAGCAAGAAAGGCAGCAACGTAAAACGGGAGGACACTCCCCCCAGC
CTTGTGGATCTCGTGTTCGAGCGCGTGAACGGAGCGCAAATGTCTGAGAC
CTACGTACAGGCCTTCAACACTCTCCAACAGCGAGGGCACATCAATCGGG
AAGGGATGCTCGCCCTCCTCCGCCAAGCGAAACGGCTATCAGATGTGTGC
GGGAGTGACGTCACCTTGGGGGCAGCTGGCGTCATCGCAAAGGCCCTCAG
GGTGACACCCCAGGAGCTGATGGTAGAAGAGGACGAAGGAGAGGGATGCA
GTAATATCAGCAGCGCTGCCTATATATCAGAGAGGGCGCGACGTCAACGG
ATGGCGGAGGAGGTGAGGACGGAGGAAGCAGCAGCCGCCCGCCTGAAGGC
CTCGCCCTTGTTTCAGCAGCGGGACGACGGCCGTACGGCCATGGTGGTGA
TTGAGATGAATAGAGCAAAGGCCCGTATGGTGGCGGTAGGGAATCAGGCA
TATCTCGACGTGTTTCCCTCCCCTTCTCACTTGCTTTCTCAGGAGATGTC
CCGACGGTGTTGGTCGCCGTTTTTGTTCGCGGCTTTAGTGGCTCACGGGG
ACAGGGAAGCGTGGTTTCGGGTGAATATGGAGGCCCTGTGCTCAGCCCCA
CCTCGGGAGATGGAGGAGGGAGGAGGAAGAGAGCGACAGAAGGAGCGGCA
ATTGTACTCGGAGTTCGTCAAGACTTTCAGTCGGGAGGGACAAGTGCTCT
TGTACTGGGCAAGGCTGGCGCAGGTAGAGGCGGGAGGGGAAGGACGATGA

protein sequence of jgi.p|Nanoce1779_2|570090

>mRNA_10916-protein ID=mRNA_10916-protein|Name=jgi.p|Nanoce1779_2|570090|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MAIEEQTKHQHLPNGLLQGVECMGGPGSTSTEEADDDDQDEDGEEGEEEG
EERHTQAITWTNCGRQVSKRHAANSPVGMKSSSKKSKKGSNVKREDTPPS
LVDLVFERVNGAQMSETYVQAFNTLQQRGHINREGMLALLRQAKRLSDVC
GSDVTLGAAGVIAKALRVTPQELMVEEDEGEGCSNISSAAYISERARRQR
MAEEVRTEEAAAARLKASPLFQQRDDGRTAMVVIEMNRAKARMVAVGNQA
YLDVFPSPSHLLSQEMSRRCWSPFLFAALVAHGDREAWFRVNMEALCSAP
PREMEEGGGRERQKERQLYSEFVKTFSREGQVLLYWARLAQVEAGGEGR*

mRNA from alignment at scaffold_71:55621..56711+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10916 ID=mRNA_10916|Name=jgi.p|Nanoce1779_2|570090|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp|location=Sequence derived from alignment at scaffold_71:55621..56711+ (Nannochloropsis oceanica)
ATGGCGATTGAGGAGCAGACAAAGCACCAGCATCTGCCGAATGGACTGCT
GCAGGGCGTGGAATGCATGGGTGGCCCGGGCAGCACCAGCACGGAGGAGG
CGGACGACGACGATCAGGACGAGGATGGAGAGGAGGGAGAGGAGGAAGGG
GAAGAGCGGCATACGCAGGCCATCACATGGACCAACTGTGGTAGACAGGT
CAGCAAGAGGCACGCTGCCAATTCACCCGTCGGCATGAAGAGCAGCAGCA
AGAAGAGCAAGAAAGGCAGCAACGTAAAACGGGAGGACACTCCCCCCAGC
CTTGTGGATCTCGTGTTCGAGCGCGTGAACGGAGCGCAAATGTCTGAGAC
CTACGTACAGGCCTTCAACACTCTCCAACAGCGAGGGCACATCAATCGGG
AAGGGATGCTCGCCCTCCTCCGCCAAGCGAAACGGCTATCAGATGTGTGC
GGGAGTGACGTCACCTTGGGGGCAGCTGGCGTCATCGCAAAGGCCCTCAG
GGTGACACCCCAGGAGCTGATGGTAGAAGAGGACGAAGGAGAGGGATGCA
GTAATATCAGCAGCGCTGCCTATATATCAGAGAGGGCGCGACGTCAACGG
ATGGCGGAGGAGGTGAGGACGGAGGAAGCAGCAGCCGCCCGCCTGAAGGC
CTCGCCCTTGTTTCAGCAGCGGGACGACGGCCGTACGGCCATGGTGGTGA
TTGAGATGAATAGAGCAAAGGCCCGTATGGTGGCGGTAGGGAATCAGGCA
TATCTCGACGTGTTTCCCTCCCCTTCTCACTTGCTTTCTCAGGAGATGTC
CCGACGGTGTTGGTCGCCGTTTTTGTTCGCGGCTTTAGTGGCTCACGGGG
ACAGGGAAGCGTGGTTTCGGGTGAATATGGAGGCCCTGTGCTCAGCCCCA
CCTCGGGAGATGGAGGAGGGAGGAGGAAGAGAGCGACAGAAGGAGCGGCA
ATTGTACTCGGAGTTCGTCAAGACTTTCAGTCGGGAGGGACAAGTGCTCT
TGTACTGGGCAAGGCTGGCGCAGGTAGAGGCGGGAGGGGAAGGTGAGAAG
CCGAAGAAGCAGCTGCACGAACACCCGCTGCAGGACGATGA

Coding sequence (CDS) from alignment at scaffold_71:55621..56711+

>mRNA_10916 ID=mRNA_10916|Name=jgi.p|Nanoce1779_2|570090|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_71:55621..56711+ (Nannochloropsis oceanica)
ATGGCGATTGAGGAGCAGACAAAGCACCAGCATCTGCCGAATGGACTGCT
GCAGGGCGTGGAATGCATGGGTGGCCCGGGCAGCACCAGCACGGAGGAGG
CGGACGACGACGATCAGGACGAGGATGGAGAGGAGGGAGAGGAGGAAGGG
GAAGAGCGGCATACGCAGGCCATCACATGGACCAACTGTGGTAGACAGGT
CAGCAAGAGGCACGCTGCCAATTCACCCGTCGGCATGAAGAGCAGCAGCA
AGAAGAGCAAGAAAGGCAGCAACGTAAAACGGGAGGACACTCCCCCCAGC
CTTGTGGATCTCGTGTTCGAGCGCGTGAACGGAGCGCAAATGTCTGAGAC
CTACGTACAGGCCTTCAACACTCTCCAACAGCGAGGGCACATCAATCGGG
AAGGGATGCTCGCCCTCCTCCGCCAAGCGAAACGGCTATCAGATGTGTGC
GGGAGTGACGTCACCTTGGGGGCAGCTGGCGTCATCGCAAAGGCCCTCAG
GGTGACACCCCAGGAGCTGATGGTAGAAGAGGACGAAGGAGAGGGATGCA
GTAATATCAGCAGCGCTGCCTATATATCAGAGAGGGCGCGACGTCAACGG
ATGGCGGAGGAGGTGAGGACGGAGGAAGCAGCAGCCGCCCGCCTGAAGGC
CTCGCCCTTGTTTCAGCAGCGGGACGACGGCCGTACGGCCATGGTGGTGA
TTGAGATGAATAGAGCAAAGGCCCGTATGGTGGCGGTAGGGAATCAGGCA
TATCTCGACGTGTTTCCCTCCCCTTCTCACTTGCTTTCTCAGGAGATGTC
CCGACGGTGTTGGTCGCCGTTTTTGTTCGCGGCTTTAGTGGCTCACGGGG
ACAGGGAAGCGTGGTTTCGGGTGAATATGGAGGCCCTGTGCTCAGCCCCA
CCTCGGGAGATGGAGGAGGGAGGAGGAAGAGAGCGACAGAAGGAGCGGCA
ATTGTACTCGGAGTTCGTCAAGACTTTCAGTCGGGAGGGACAAGTGCTCT
TGTACTGGGCAAGGCTGGCGCAGGTAGAGGCGGGAGGGGAAGGACGATGA
ATGGCGATTGAGGAGCAGACAAAGCACCAGCATCTGCCGAATGGACTGCT
GCAGGGCGTGGAATGCATGGGTGGCCCGGGCAGCACCAGCACGGAGGAGG
CGGACGACGACGATCAGGACGAGGATGGAGAGGAGGGAGAGGAGGAAGGG
GAAGAGCGGCATACGCAGGCCATCACATGGACCAACTGTGGTAGACAGGT
CAGCAAGAGGCACGCTGCCAATTCACCCGTCGGCATGAAGAGCAGCAGCA
AGAAGAGCAAGAAAGGCAGCAACGTAAAACGGGAGGACACTCCCCCCAGC
CTTGTGGATCTCGTGTTCGAGCGCGTGAACGGAGCGCAAATGTCTGAGAC
CTACGTACAGGCCTTCAACACTCTCCAACAGCGAGGGCACATCAATCGGG
AAGGGATGCTCGCCCTCCTCCGCCAAGCGAAACGGCTATCAGATGTGTGC
GGGAGTGACGTCACCTTGGGGGCAGCTGGCGTCATCGCAAAGGCCCTCAG
GGTGACACCCCAGGAGCTGATGGTAGAAGAGGACGAAGGAGAGGGATGCA
GTAATATCAGCAGCGCTGCCTATATATCAGAGAGGGCGCGACGTCAACGG
ATGGCGGAGGAGGTGAGGACGGAGGAAGCAGCAGCCGCCCGCCTGAAGGC
CTCGCCCTTGTTTCAGCAGCGGGACGACGGCCGTACGGCCATGGTGGTGA
TTGAGATGAATAGAGCAAAGGCCCGTATGGTGGCGGTAGGGAATCAGGCA
TATCTCGACGTGTTTCCCTCCCCTTCTCACTTGCTTTCTCAGGAGATGTC
CCGACGGTGTTGGTCGCCGTTTTTGTTCGCGGCTTTAGTGGCTCACGGGG
ACAGGGAAGCGTGGTTTCGGGTGAATATGGAGGCCCTGTGCTCAGCCCCA
CCTCGGGAGATGGAGGAGGGAGGAGGAAGAGAGCGACAGAAGGAGCGGCA
ATTGTACTCGGAGTTCGTCAAGACTTTCAGTCGGGAGGGACAAGTGCTCT
TGTACTGGGCAAGGCTGGCGCAGGTAGAGGCGGGAGGGGAAGGACGATGA

Synonyms

Publications