jgi.p|Nanoce1779_2|613111, mRNA_10898 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613111
Unique NamemRNA_10898
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length831
Alignment locationscaffold_71:1..1118 -

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Properties
Property NameValue
TranscriptId613197
TrackFilteredModels2
ProteinId613111
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:1..1118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613111gene_10898Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613111mRNA_10898-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10898CDS_10898Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10898 ID=mRNA_10898|Name=jgi.p|Nanoce1779_2|613111|organism=Nannochloropsis oceanica|type=mRNA|length=831bp
TCCTTCATCCCCAAGCCCTTCCATCGCTGCCACTGCTGGCAACGTTCCCG
TGGACATAGATGCAGAAGGAAGGAGGGAAGGAGGGAGAGAGGGAGGGGGT
TCGGAGAGGACAACATGGGGACCAAAGCCCATGCCCCGGAGGCAGACGCG
GATACGAGGGCCGGGGGTGTGTGCGTGGTGGAGGAGGGCGACTGCCCTGT
ACACGTCACGAGGCTTCAGAGCATTGGAATCGAGGAGGAGGACTTCAAGG
GAAGGGCAGACGCGACGCAGGACGAGGGAGGAGAGGAAGGAGAGGACGGT
AAAGGGAGGGAGGGCGTTGGCACTGGGTGGAATGGAGAGGGAAGGGGGAG
GGAGGAAGGGAGGGAGGAAGGGAGTGATGAGTGCCGCGTTCTTGGCCACT
GCTCTTTCTCGCTACGATCGGCCATGCCCCTCTTTCCTTTCTCCCTCCCT
CCCTTCCCTCCTCCTCACCTTAAGCGCAACTCCCGAAGCTTTCCACATCG
TCCCTCGTCCAATGCCTCCCTCAGGCTCTCCCCCACTCCCTCCCCGAGCA
CAAGCCACGACAGGTCCAAAAATTCTAGAGAGCCACCTCCTCCCCTCCTC
ACGAAATCGACCAGCGTTGCCATGGTCGTCTTCCCTCCCGTTAACGTGGC
AGCCGACAGGGCCAGCGGCGGCCAGCTGACTCACCCCGCCATCTGTGATG
CAAAGAGACCCACAATTTAGCTCCTCCAGAAGGGGAGAGCCGCCTGGAGG
TGGAGGAGGAAGAAAGGGAGGGGTGAGGGCGAGGATGGGAAATAGTTGGA
GGGGTGGGAAGAGGTGAAGGAATAGTAGAAA
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protein sequence of jgi.p|Nanoce1779_2|613111

>mRNA_10898-protein ID=mRNA_10898-protein|Name=jgi.p|Nanoce1779_2|613111|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MGTKAHAPEADADTRAGGVCVVEEGDCPVHVTRLQSIGIEEEDFKGRADA
TQDEGGEEGEDGKGREGVGTGWNGEGRGREEGREEGSDECRVLGHCSFSL
RSAMPLFPFSLPPFPPPHLKRNSRSFPHRPSSNASLRLSPTPSPSTSHDR
SKNSREPPPPLLTKSTSVAMVVFPPVNVAADRASGGQLTHPAICDAKRPT
I*
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mRNA from alignment at scaffold_71:1..1118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10898 ID=mRNA_10898|Name=jgi.p|Nanoce1779_2|613111|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp|location=Sequence derived from alignment at scaffold_71:1..1118- (Nannochloropsis oceanica)
TCCTTCATCCCCAAGCCCTTCCATCGCTGCCACTGCTGGCAACGTTCCCG
TGGACATAGATGCAGAAGGAAGGAGGGAAGGAGGGAGAGAGGGAGGGGGT
TCGGAGAGGACAACATGGGGACCAAAGCCCATGCCCCGGAGGCAGACGCG
GATACGAGGGCCGGGGGTGTGTGCGTGGTGGAGGAGGGCGACTGCCCTGT
ACACGTCACGAGGCTTCAGAGCATTGGAATCGAGGAGGAGGACTTCAAGG
GAAGGGCAGACGCGACGCAGGACGAGGGAGGAGAGGAAGGAGAGGACGGT
AAAGGGAGGGAGGGCGTTGGCACTGGGTGGAATGGAGAGGGAAGGGGGAG
GGAGGAAGGGAGGGAGGAAGGGAGTGATGAGTGCCGCGTTCTTGGCCACT
GCTCTTTCTCGCTACGATCGGCCATGCCCCTCTTTCCTTTCTCCCTCCCT
CCCTTCCCTCCTCCTCACCTTAAGCGCAACTCCCGAAGCTTTCCACATCG
TCCCTCGTCCAATGCCTCCCTCAGGCTCTCCCCCACTCCCTCCCCGAGCA
CAAGCCACGACAGGTCCAAAAATTCTAGAGAGCCACCTCCTCCCCTCCTC
ACGAAATCGACCAGCGTTGCCATGGTCGTCTTCCCTCCCGTTAACGTGGC
AGCCGACAGGGCCAGGTGCGTGATCGCGGGCAGTCCTCCCTCCCCCCCTT
CCTCCCTCCCTCCCTCCCCCCCTGCCTCTGAGGTGGGGGCTTGATGGATC
TCTGAGAGAATATCAGCGAGGCCGACGGGGCCGATGCAGCCACCGGGAAG
ATAGAGATGACGCAGGTGCCTAGGGAGGGAGGGAAGGAGGGAGGGAAGAT
TGGTAGAACCACATTTAGTTTTGATATGACTTTCCCTCCTTCCCTCCTCC
CCCCCTTCCCTCCTCTCCCTCCTTGCTTACCTATGTTTGCTTTGACGGAA
AGCGGCGGCCAGCTGACTCACCCCGCCATCTGTGATGCAAAGAGACCCAC
AATTTAGCTCCTCCAGAAGGGGAGAGCCGCCTGGAGGTGGAGGAGGAAGA
AAGGGAGGGGTGAGGGCGAGGATGGGAAATAGTTGGAGGGGTGGGAAGAG
GTGAAGGAATAGTAGAAA
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Coding sequence (CDS) from alignment at scaffold_71:1..1118-

>mRNA_10898 ID=mRNA_10898|Name=jgi.p|Nanoce1779_2|613111|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_71:1..1118- (Nannochloropsis oceanica)
CGGCGGCCAGCTGACTCACCCCGCCATCTGTGATGCAAAGAGACCCACAA
TTTAGATGGGGACCAAAGCCCATGCCCCGGAGGCAGACGCGGATACGAGG
GCCGGGGGTGTGTGCGTGGTGGAGGAGGGCGACTGCCCTGTACACGTCAC
GAGGCTTCAGAGCATTGGAATCGAGGAGGAGGACTTCAAGGGAAGGGCAG
ACGCGACGCAGGACGAGGGAGGAGAGGAAGGAGAGGACGGTAAAGGGAGG
GAGGGCGTTGGCACTGGGTGGAATGGAGAGGGAAGGGGGAGGGAGGAAGG
GAGGGAGGAAGGGAGTGATGAGTGCCGCGTTCTTGGCCACTGCTCTTTCT
CGCTACGATCGGCCATGCCCCTCTTTCCTTTCTCCCTCCCTCCCTTCCCT
CCTCCTCACCTTAAGCGCAACTCCCGAAGCTTTCCACATCGTCCCTCGTC
CAATGCCTCCCTCAGGCTCTCCCCCACTCCCTCCCCGAGCACAAGCCACG
ACAGGTCCAAAAATTCTAGAGAGCCACCTCCTCCCCTCCTCACGAAATCG
ACCAGCGTTGCCATGGTCGTCTTCCCTCCCGTTAACGTGGCAGCCGACAG
GGCCAGCGGCGGCCAGCTGACTCACCCCGCCATCTGTGATGCAAAGAGAC
CCACAATTTAGATGGGGACCAAAGCCCATGCCCCGGAGGCAGACGCGGAT
ACGAGGGCCGGGGGTGTGTGCGTGGTGGAGGAGGGCGACTGCCCTGTACA
CGTCACGAGGCTTCAGAGCATTGGAATCGAGGAGGAGGACTTCAAGGGAA
GGGCAGACGCGACGCAGGACGAGGGAGGAGAGGAAGGAGAGGACGGTAAA
GGGAGGGAGGGCGTTGGCACTGGGTGGAATGGAGAGGGAAGGGGGAGGGA
GGAAGGGAGGGAGGAAGGGAGTGATGAGTGCCGCGTTCTTGGCCACTGCT
CTTTCTCGCTACGATCGGCCATGCCCCTCTTTCCTTTCTCCCTCCCTCCC
TTCCCTCCTCCTCACCTTAAGCGCAACTCCCGAAGCTTTCCACATCGTCC
CTCGTCCAATGCCTCCCTCAGGCTCTCCCCCACTCCCTCCCCGAGCACAA
GCCACGACAGGTCCAAAAATTCTAGAGAGCCACCTCCTCCCCTCCTCACG
AAATCGACCAGCGTTGCCATGGTCGTCTTCCCTCCCGTTAACGTGGCAGC
CGACAGGGCCAG
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Synonyms
Publications