jgi.p|Nanoce1779_2|675063, mRNA_10910 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|675063
Unique NamemRNA_10910
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_71:40287..41660 -

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Properties
Property NameValue
TranscriptId675149
TrackFilteredModels2
ProteinId675063
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:40287..41660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675063gene_10910Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675063mRNA_10910-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10910CDS_10910Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10910 ID=mRNA_10910|Name=jgi.p|Nanoce1779_2|675063|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
ATTTGCTTCAGACCCAATTCCCTCTTGTTGTGTACTCTCGCTTCTTCCTC
AAGGACACGCCAACCAAACGCCCCTTCTACACCTTATAGCTCCAATACAC
GTGGAGTCCCACATGCAGTTCGGCCCGAGGTGATGTGGCCTCTCGTTTGA
GGTCCTGAAAAATACAACCTCCTCCGGGCCATATCCGTTAGACCGACGAC
GACGAGAGGGTGTAGGCGAGCCAGTTCTTGGACTGATGACTGCACTTGTA
ATGCTGGAAGTCGCAGATCAAGAAAATCTATGCGATCGTATATCCTTTCG
TACGCATTCTTATGGTCGTTTGGACATACATCCCGCTGTAAAGCCAGTAA
TGTCCTCCACGAGCGAATGCCATATCTCACCAGATCTTGTCCCCACCCCA
CCCATCCCAACACCAACTACTGCAGCACAACCACCACCATCTCAACCACC
GCTACCATCTTCACCACCATGACTTCCTCTACTTCCAATCCAGCTGCGGC
CTCTTCGTACACCGCGCCTTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTC
CGACGACGAAAGAACTGCTCGCGGGCTTGGATATGTTCCTCCATTTGTGT
GCCCCGCCTGGCAAATACCGATTGGTGCGGATTTTGGGCTTTTATTATAT
CATGACACGCATCTTTCTCACCTTTGTGGCAACGCTCTTGCTTTCCACAC
TAGGTCAACTCATTCCTGCGCTCAAGCCGTCCCTTCGCACTGTTCTCATG
AAAGGAGGGTGCGTACCGCGAGACACAATCACACAGCGTTACCAGATTCC
CGTACTCTAGAGGAAGAGGACAGTGGGAGGGAGGAAGGAAGGGAAGGAGA
GATGAATGGCAAAAGTATAAAGTAGTGTTTATTGAGAAAGTGCTCATGTC
ACAAGGAATAGAAATAGAGCGGTAGTGCCAGGTCTTGCAAAAGGGAAGGT
GTTGGCGAAGAAGAGGGGAGGGTAGGGGGTTAGTGAAGGTGTCCTGAGGT
CGTGGTTGTGGTGTGTTTCTTGGATTGACACGAAGAGGGAGATTAGGAAG
AGATCAATTATATAGGTATAGTGGAAGAAGGGCAAGGGAGGGAGGGCAAG
AGGGGCATGGTGTGTAAATGGATGAAGGGCAGGTGAATTGTCGGTGTCAA
AAGAGATGAAAAATAACGAGAGAGCAAGACGGAGAAGAAAATGACGGAGA
GCATCGAAGAAATTTTAAAAGCAAAAGCATGAAATACCAAAAGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|675063

>mRNA_10910-protein ID=mRNA_10910-protein|Name=jgi.p|Nanoce1779_2|675063|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MRSYILSYAFLWSFGHTSRCKASNVLHERMPYLTRSCPHPTHPNTNYCST
TTTISTTATIFTTMTSSTSNPAAASSYTAPSAPRARRSSLPTTKELLAGL
DMFLHLCAPPGKYRLVRILGFYYIMTRIFLTFVATLLLSTLGQLIPALKP
SLRTVLMKGGCVPRDTITQRYQIPVL*
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mRNA from alignment at scaffold_71:40287..41660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10910 ID=mRNA_10910|Name=jgi.p|Nanoce1779_2|675063|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp|location=Sequence derived from alignment at scaffold_71:40287..41660- (Nannochloropsis oceanica)
ATTTGCTTCAGACCCAATTCCCTCTTGTTGTGTACTCTCGCTTCTTCCTC
AAGGACACGCCAACCAAACGCCCCTTCTACACCTTATAGCTCCAATACAC
GTGGAGTCCCACATGCAGTTCGGCCCGAGGTGATGTGGCCTCTCGTTTGA
GGTCCTGAAAAATACAACCTCCTCCGGGCCATATCCGTTAGACCGACGAC
GACGAGAGGGTGTAGGCGAGCCAGTTCTTGGACTGATGACTGCACTTGTA
ATGCTGGAAGTCGCAGATCAAGAAAATCTATGCGATCGTATATCCTTTCG
TACGCATTCTTATGGTCGTTTGGACATACATCCCGCTGTAAAGCCAGTAA
TGTCCTCCACGAGCGAATGCCATATCTCACCAGATCTTGTCCCCACCCCA
CCCATCCCAACACCAACTACTGCAGCACAACCACCACCATCTCAACCACC
GCTACCATCTTCACCACCATGACTTCCTCTACTTCCAATCCAGCTGCGGC
CTCTTCGTACACCGCGCCTTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTC
CGACGACGAAAGAACTGCTCGCGGGCTTGGATATGTTCCTCCATTTGTGT
GCCCCGCCTGGCAAATACCGATTGGTGCGGATTTTGGGCTTTTATTATAT
CATGACACGCATCTTTCTCACCTTTGTGGCAACGCTCTTGGTAAGAAAGA
CGGAGGGCTAGGAGAGAGGGAGGGAGAGAGGGCGCTTGTTCCCTTCCTTT
TTGGGTCCATCATCGAAGGTCTCCCACCCCATCCTTCCTTCTCCATTTTT
TCCCACCACCTTATAGCTTTCCACACTAGGTCAACTCATTCCTGCGCTCA
AGCCGTCCCTTCGCACTGTTCTCATGAAAGGAGGGTGCGTACCGCGAGAC
ACAATCACACAGCGTTACCAGATTCCCGTACTCTAGAGGAAGAGGACAGT
GGGAGGGAGGAAGGAAGGGAAGGAGAGATGAATGGCAAAAGTATAAAGTA
GTGTTTATTGAGAAAGTGCTCATGTCACAAGGAATAGAAATAGAGCGGTA
GTGCCAGGTCTTGCAAAAGGGAAGGTGTTGGCGAAGAAGAGGGGAGGGTA
GGGGGTTAGTGAAGGTGTCCTGAGGTCGTGGTTGTGGTGTGTTTCTTGGA
TTGACACGAAGAGGGAGATTAGGAAGAGATCAATTATATAGGTATAGTGG
AAGAAGGGCAAGGGAGGGAGGGCAAGAGGGGCATGGTGTGTAAATGGATG
AAGGGCAGGTGAATTGTCGGTGTCAAAAGAGATGAAAAATAACGAGAGAG
CAAGACGGAGAAGAAAATGACGGAGAGCATCGAAGAAATTTTAAAAGCAA
AAGCATGAAATACCAAAAGGGTAG
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Coding sequence (CDS) from alignment at scaffold_71:40287..41660-

>mRNA_10910 ID=mRNA_10910|Name=jgi.p|Nanoce1779_2|675063|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_71:40287..41660- (Nannochloropsis oceanica)
CTTTCCACACTAGGTCAACTCATTCCTGCGCTCAAGCCGTCCCTTCGCAC
TGTTCTCATGAAAGGAGGGTGCGTACCGCGAGACACAATCACACAGCGTT
ACCAGATTCCCGTACTCTAGATGCGATCGTATATCCTTTCGTACGCATTC
TTATGGTCGTTTGGACATACATCCCGCTGTAAAGCCAGTAATGTCCTCCA
CGAGCGAATGCCATATCTCACCAGATCTTGTCCCCACCCCACCCATCCCA
ACACCAACTACTGCAGCACAACCACCACCATCTCAACCACCGCTACCATC
TTCACCACCATGACTTCCTCTACTTCCAATCCAGCTGCGGCCTCTTCGTA
CACCGCGCCTTCTGCCCCTCGAGCTCGGCGTTCTTCCCTTCCGACGACGA
AAGAACTGCTCGCGGGCTTGGATATGTTCCTCCATTTGTGTGCCCCGCCT
GGCAAATACCGATTGGTGCGGATTTTGGGCTTTTATTATATCATGACACG
CATCTTTCTCACCTTTGTGGCAACGCTCTTGCTTTCCACACTAGGTCAAC
TCATTCCTGCGCTCAAGCCGTCCCTTCGCACTGTTCTCATGAAAGGAGGG
TGCGTACCGCGAGACACAATCACACAGCGTTACCAGATTCCCGTACTCTA
GATGCGATCGTATATCCTTTCGTACGCATTCTTATGGTCGTTTGGACATA
CATCCCGCTGTAAAGCCAGTAATGTCCTCCACGAGCGAATGCCATATCTC
ACCAGATCTTGTCCCCACCCCACCCATCCCAACACCAACTACTGCAGCAC
AACCACCACCATCTCAACCACCGCTACCATCTTCACCACCATGACTTCCT
CTACTTCCAATCCAGCTGCGGCCTCTTCGTACACCGCGCCTTCTGCCCCT
CGAGCTCGGCGTTCTTCCCTTCCGACGACGAAAGAACTGCTCGCGGGCTT
GGATATGTTCCTCCATTTGTGTGCCCCGCCTGGCAAATACCGATTGGTGC
GGATTTTGGGCTTTTATTATATCATGACACGCATCTTTCTCACCTTTGTG
GCAACGCTCTTG
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Synonyms
Publications