jgi.p|Nanoce1779_2|613179, mRNA_10912 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613179
Unique NamemRNA_10912
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length446
Alignment locationscaffold_71:45332..45777 -

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Properties
Property NameValue
TranscriptId613265
TrackFilteredModels2
ProteinId613179
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:45332..45777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613179gene_10912Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613179mRNA_10912-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10912CDS_10912Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10912 ID=mRNA_10912|Name=jgi.p|Nanoce1779_2|613179|organism=Nannochloropsis oceanica|type=mRNA|length=446bp
GCACTGCGACTGGCCCATGTGCATCTTTCTTTCCTGAATAAAGTAGTCCC
CTTCTTCTTTAGTGAATGCGGTGGGTTCGAATCAGCTATTTCTTTTATCC
CTGTGTATTCTTCCGATCTACATTTCTTGCTTTCGTCGTAGAAGCTGTTG
TTTTGGTTTGGTTCCTCCGTGTGCGTGTGCTGCCTAACGCACGCATCCAC
TTTCTAACTCCACCTAGCCACCATGGTCAGTCCATGGCCCGACTTAAAAT
ACATTCGCCCTTCCCTCCTTCCCTTCTTCCCTTCTTCCCTCACCTCTCCC
ATTCCTCCACCCCTTCCTCATCCTCCTCATGACTCCTTCCCTCCCCACAC
GACTCGAGCCTCAAAAAGAACGAGCCCCCTCCTACTCCTACTCCTCCTCC
TCCTACTGCTCCCCTCCCTCCCCCGTAGTTTTCTAGAATGATTCTC
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protein sequence of jgi.p|Nanoce1779_2|613179

>mRNA_10912-protein ID=mRNA_10912-protein|Name=jgi.p|Nanoce1779_2|613179|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MRWVRISYFFYPCVFFRSTFLAFVVEAVVLVWFLRVRVLPNARIHFLTPP
SHHGQSMARLKIHSPFPPSLLPFFPHLSHSSTPSSSSS*
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mRNA from alignment at scaffold_71:45332..45777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10912 ID=mRNA_10912|Name=jgi.p|Nanoce1779_2|613179|organism=Nannochloropsis oceanica|type=mRNA|length=446bp|location=Sequence derived from alignment at scaffold_71:45332..45777- (Nannochloropsis oceanica)
GCACTGCGACTGGCCCATGTGCATCTTTCTTTCCTGAATAAAGTAGTCCC
CTTCTTCTTTAGTGAATGCGGTGGGTTCGAATCAGCTATTTCTTTTATCC
CTGTGTATTCTTCCGATCTACATTTCTTGCTTTCGTCGTAGAAGCTGTTG
TTTTGGTTTGGTTCCTCCGTGTGCGTGTGCTGCCTAACGCACGCATCCAC
TTTCTAACTCCACCTAGCCACCATGGTCAGTCCATGGCCCGACTTAAAAT
ACATTCGCCCTTCCCTCCTTCCCTTCTTCCCTTCTTCCCTCACCTCTCCC
ATTCCTCCACCCCTTCCTCATCCTCCTCATGACTCCTTCCCTCCCCACAC
GACTCGAGCCTCAAAAAGAACGAGCCCCCTCCTACTCCTACTCCTCCTCC
TCCTACTGCTCCCCTCCCTCCCCCGTAGTTTTCTAGAATGATTCTC
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Coding sequence (CDS) from alignment at scaffold_71:45332..45777-

>mRNA_10912 ID=mRNA_10912|Name=jgi.p|Nanoce1779_2|613179|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_71:45332..45777- (Nannochloropsis oceanica)
ATGCGGTGGGTTCGAATCAGCTATTTCTTTTATCCCTGTGTATTCTTCCG
ATCTACATTTCTTGCTTTCGTCGTAGAAGCTGTTGTTTTGGTTTGGTTCC
TCCGTGTGCGTGTGCTGCCTAACGCACGCATCCACTTTCTAACTCCACCT
AGCCACCATGGTCAGTCCATGGCCCGACTTAAAATACATTCGCCCTTCCC
TCCTTCCCTTCTTCCCTTCTTCCCTCACCTCTCCCATTCCTCCACCCCTT
CCTCATCCTCCTCATGA
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Synonyms
Publications