jgi.p|Nanoce1779_2|613155, mRNA_10905 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613155
Unique NamemRNA_10905
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_71:28222..29214 +

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Properties
Property NameValue
TranscriptId613241
TrackFilteredModels2
ProteinId613155
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:28222..29214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613155gene_10905Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613155mRNA_10905-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10905CDS_10905Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10905 ID=mRNA_10905|Name=jgi.p|Nanoce1779_2|613155|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
CTCCCTCCCTCGCTCCCTCTCTCCCTCCCTCCCTACCCGACCACCTCCAG
GCGGCAGGCAGCCTCATGCGTCCCATCCACTACCGGCTGTCGTTCGCCGA
GATGGTGGTGCCTTACGGGGACCCAGCCTACCCCCACTACAAGAAGAACG
CCTTTGATGCCGGCGAGGACGGTGCATCCCTCCCTCCTTCCTTCCTTTCC
TCCCTCCCTCCTTCCTTCCTTTCCTCCATCCTTACTTCTTATCGCAGCCT
ACAGGTGCACTTGCCACCTGTCTCCTAGGTGTCACCTCTCTATCCTCGCT
ACCTCTCGCTCTTTTCTTCCCTCCCCTCCCTTTCCCCCTCCCTCCCTTTA
GGCCTGGGCTGTAACGCGCATTTCCTCTCCGTGGGCTGCGACTGCCTGGG
GCATATCTACTACCTCGACGCCAACCTAGGGCCTCTGGCACGTACGTACT
CAGACGACTAGGGAAGAGGGATCTCCAAGTGCTTCCACCAACAAGTAGTC
GCACCTCGTCCCCTAAGGGGAGAGGCCACGCAGCTCCTTCAGATGGTCAA
GGGGAATCTGCATGATTGCTTGCGTGCTGTTTTCGTCCTCAATCACCACC
ATATCGAGCTTGAGCAGGCTCACGAAGCGACCATAGACCTGCGTGGTAGT
GTAATGCCCGCGCCGCAGCGCCCCATGAGCTGCGTCGACCTGATGCCCAC
GCATCAAGGTACTCTCGGGATTAGCGCCTATGCGATGGAGTCTGAGCGTC
TTGGGAGAGGGACGCGAAGCTCTTGATGTAAGCGGCCGCGCTGTCATCGT
TGTCCTCGTCCACTAAGTCAATCACTGGTCAGCCTGCCCTTGCTGGTGCT
CCCCCGCCACTTGCCGCTGCTGGCGTTGCCGAAGTCTCCTGCCGCGGGGT
GGATGATGACTGGGGCTGACGACTCGTGGCACTGAAGGAGGAGGAGGAGG
TGATGGCATGAACCTCCTCGGGCTTCCCCGCCTGTTGCCGCTT
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protein sequence of jgi.p|Nanoce1779_2|613155

>mRNA_10905-protein ID=mRNA_10905-protein|Name=jgi.p|Nanoce1779_2|613155|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MRPIHYRLSFAEMVVPYGDPAYPHYKKNAFDAGEDGASLPPSFLSSLPPS
FLSSILTSYRSLQVHLPPVS*
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mRNA from alignment at scaffold_71:28222..29214+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10905 ID=mRNA_10905|Name=jgi.p|Nanoce1779_2|613155|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at scaffold_71:28222..29214+ (Nannochloropsis oceanica)
CTCCCTCCCTCGCTCCCTCTCTCCCTCCCTCCCTACCCGACCACCTCCAG
GCGGCAGGCAGCCTCATGCGTCCCATCCACTACCGGCTGTCGTTCGCCGA
GATGGTGGTGCCTTACGGGGACCCAGCCTACCCCCACTACAAGAAGAACG
CCTTTGATGCCGGCGAGGACGGTGCATCCCTCCCTCCTTCCTTCCTTTCC
TCCCTCCCTCCTTCCTTCCTTTCCTCCATCCTTACTTCTTATCGCAGCCT
ACAGGTGCACTTGCCACCTGTCTCCTAGGTGTCACCTCTCTATCCTCGCT
ACCTCTCGCTCTTTTCTTCCCTCCCCTCCCTTTCCCCCTCCCTCCCTTTA
GGCCTGGGCTGTAACGCGCATTTCCTCTCCGTGGGCTGCGACTGCCTGGG
GCATATCTACTACCTCGACGCCAACCTAGGGCCTCTGGCACGTACGTACT
CAGACGACTAGGGAAGAGGGATCTCCAAGTGCTTCCACCAACAAGTAGTC
GCACCTCGTCCCCTAAGGGGAGAGGCCACGCAGCTCCTTCAGATGGTCAA
GGGGAATCTGCATGATTGCTTGCGTGCTGTTTTCGTCCTCAATCACCACC
ATATCGAGCTTGAGCAGGCTCACGAAGCGACCATAGACCTGCGTGGTAGT
GTAATGCCCGCGCCGCAGCGCCCCATGAGCTGCGTCGACCTGATGCCCAC
GCATCAAGGTACTCTCGGGATTAGCGCCTATGCGATGGAGTCTGAGCGTC
TTGGGAGAGGGACGCGAAGCTCTTGATGTAAGCGGCCGCGCTGTCATCGT
TGTCCTCGTCCACTAAGTCAATCACTGGTCAGCCTGCCCTTGCTGGTGCT
CCCCCGCCACTTGCCGCTGCTGGCGTTGCCGAAGTCTCCTGCCGCGGGGT
GGATGATGACTGGGGCTGACGACTCGTGGCACTGAAGGAGGAGGAGGAGG
TGATGGCATGAACCTCCTCGGGCTTCCCCGCCTGTTGCCGCTT
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Coding sequence (CDS) from alignment at scaffold_71:28222..29214+

>mRNA_10905 ID=mRNA_10905|Name=jgi.p|Nanoce1779_2|613155|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_71:28222..29214+ (Nannochloropsis oceanica)
ATGCGTCCCATCCACTACCGGCTGTCGTTCGCCGAGATGGTGGTGCCTTA
CGGGGACCCAGCCTACCCCCACTACAAGAAGAACGCCTTTGATGCCGGCG
AGGACGGTGCATCCCTCCCTCCTTCCTTCCTTTCCTCCCTCCCTCCTTCC
TTCCTTTCCTCCATCCTTACTTCTTATCGCAGCCTACAGGTGCACTTGCC
ACCTGTCTCCTAG
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Synonyms
Publications