jgi.p|Nanoce1779_2|613154, mRNA_10904 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613154
Unique Name	mRNA_10904
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	959
Alignment location	scaffold_71:26924..27882 -

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Properties


Property Name	Value
TranscriptId	613240
Track	FilteredModels2
ProteinId	613154

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_71	supercontig	scaffold_71:26924..27882 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613154	gene_10904	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613154	mRNA_10904-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10904	CDS_10904	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_71:26924..27882-
coding sequence from alignment at scaffold_71:26924..27882-

mRNA sequence

>mRNA_10904 ID=mRNA_10904|Name=jgi.p|Nanoce1779_2|613154|organism=Nannochloropsis oceanica|type=mRNA|length=959bp
GCTCTTTACATATATAATCGCCTCCTAAAGGCATTTCTTTCTTCTTACAA
ATCGATAGAATGAATCCTTTGGCTACAATGGTCAGACTCCGTGGCCTGGT
CCTGGAAATACAAGCACATAACACAAGTAGTGTTAGAGTAAGAAGATACA
CACATACACGATACAACACTGCACTGACACAGAAACCACTCTCAGGCACA
AAGACAAACCAACGCGTCAGGAACGAAAGCCGGAGCTTCCAGGCTGAGTG
CGAACATACAAGACGAAGTCACAGATAAACATGTAATGCGCAGGACCTAG
AGCTCTCGTGGCCAAAGAGTGTGATGTCAACTAGACGCCCAATGGCCATG
AGATGGCGCCTAGGGGCTGGCGGAGGGAGTGCAGAGGAACTTGGTCGCCC
TGGCTCCTTCCCTCTCATTGCAATTCGAGACGCTGTCTTCAATCTCACCG
ACGCCAGAAATACCGAAGATAGCCGTCAGAGGCGACGACAGAGTGTTATT
GAACTCCTGTCGGCGGAAAACAGCCGACAACCTGTAGAAGGAAGACATGG
TGGTCGTGTTGCGGTTCCTCTGCGACTCGATCATAACACCCTTCGGCACC
TTATTGGTTCTCTTGGCCGTGACACGGGCTCCCGCAGTTTTACAAACGAT
TCCCCTATCGTTTTTGAGTGCATTGCAATCAGCTGCGTCGAAGTCCACGC
CGTTCACGAAATCGTCATTCCCGTCTTCAAGCGCCGCAAACATGCCAGCG
TCTGGAGGGGCCGAGACAAAAAGCCCGTCAGGGTCATAGATATAGCCCTT
AGCACTCCATTGGTCCTTGTTCGCCCTGTCCACGTCGACGGCCTTGATGG
AGGAGAGGATCAACACCGGCTCAGCCGGCTCAGCTGCCGTCAAGGCGAGG
GTGATACCGAGGGCAAGCAGTGAAAAAGCGCGACGCATGGTGTATAACTT
ATTTGCTGT

protein sequence of jgi.p|Nanoce1779_2|613154

>mRNA_10904-protein ID=mRNA_10904-protein|Name=jgi.p|Nanoce1779_2|613154|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MSTRRPMAMRWRLGAGGGSAEELGRPGSFPLIAIRDAVFNLTDARNTEDS
RQRRRQSVIELLSAENSRQPVEGRHGGRVAVPLRLDHNTLRHLIGSLGRD
TGSRSFTNDSPIVFECIAISCVEVHAVHEIVIPVFKRRKHASVWRGRDKK
PVRVIDIALSTPLVLVRPVHVDGLDGGEDQHRLSRLSCRQGEGDTEGKQ*

mRNA from alignment at scaffold_71:26924..27882-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10904 ID=mRNA_10904|Name=jgi.p|Nanoce1779_2|613154|organism=Nannochloropsis oceanica|type=mRNA|length=959bp|location=Sequence derived from alignment at scaffold_71:26924..27882- (Nannochloropsis oceanica)
GCTCTTTACATATATAATCGCCTCCTAAAGGCATTTCTTTCTTCTTACAA
ATCGATAGAATGAATCCTTTGGCTACAATGGTCAGACTCCGTGGCCTGGT
CCTGGAAATACAAGCACATAACACAAGTAGTGTTAGAGTAAGAAGATACA
CACATACACGATACAACACTGCACTGACACAGAAACCACTCTCAGGCACA
AAGACAAACCAACGCGTCAGGAACGAAAGCCGGAGCTTCCAGGCTGAGTG
CGAACATACAAGACGAAGTCACAGATAAACATGTAATGCGCAGGACCTAG
AGCTCTCGTGGCCAAAGAGTGTGATGTCAACTAGACGCCCAATGGCCATG
AGATGGCGCCTAGGGGCTGGCGGAGGGAGTGCAGAGGAACTTGGTCGCCC
TGGCTCCTTCCCTCTCATTGCAATTCGAGACGCTGTCTTCAATCTCACCG
ACGCCAGAAATACCGAAGATAGCCGTCAGAGGCGACGACAGAGTGTTATT
GAACTCCTGTCGGCGGAAAACAGCCGACAACCTGTAGAAGGAAGACATGG
TGGTCGTGTTGCGGTTCCTCTGCGACTCGATCATAACACCCTTCGGCACC
TTATTGGTTCTCTTGGCCGTGACACGGGCTCCCGCAGTTTTACAAACGAT
TCCCCTATCGTTTTTGAGTGCATTGCAATCAGCTGCGTCGAAGTCCACGC
CGTTCACGAAATCGTCATTCCCGTCTTCAAGCGCCGCAAACATGCCAGCG
TCTGGAGGGGCCGAGACAAAAAGCCCGTCAGGGTCATAGATATAGCCCTT
AGCACTCCATTGGTCCTTGTTCGCCCTGTCCACGTCGACGGCCTTGATGG
AGGAGAGGATCAACACCGGCTCAGCCGGCTCAGCTGCCGTCAAGGCGAGG
GTGATACCGAGGGCAAGCAGTGAAAAAGCGCGACGCATGGTGTATAACTT
ATTTGCTGT

Coding sequence (CDS) from alignment at scaffold_71:26924..27882-

>mRNA_10904 ID=mRNA_10904|Name=jgi.p|Nanoce1779_2|613154|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_71:26924..27882- (Nannochloropsis oceanica)
ATGTCAACTAGACGCCCAATGGCCATGAGATGGCGCCTAGGGGCTGGCGG
AGGGAGTGCAGAGGAACTTGGTCGCCCTGGCTCCTTCCCTCTCATTGCAA
TTCGAGACGCTGTCTTCAATCTCACCGACGCCAGAAATACCGAAGATAGC
CGTCAGAGGCGACGACAGAGTGTTATTGAACTCCTGTCGGCGGAAAACAG
CCGACAACCTGTAGAAGGAAGACATGGTGGTCGTGTTGCGGTTCCTCTGC
GACTCGATCATAACACCCTTCGGCACCTTATTGGTTCTCTTGGCCGTGAC
ACGGGCTCCCGCAGTTTTACAAACGATTCCCCTATCGTTTTTGAGTGCAT
TGCAATCAGCTGCGTCGAAGTCCACGCCGTTCACGAAATCGTCATTCCCG
TCTTCAAGCGCCGCAAACATGCCAGCGTCTGGAGGGGCCGAGACAAAAAG
CCCGTCAGGGTCATAGATATAGCCCTTAGCACTCCATTGGTCCTTGTTCG
CCCTGTCCACGTCGACGGCCTTGATGGAGGAGAGGATCAACACCGGCTCA
GCCGGCTCAGCTGCCGTCAAGGCGAGGGTGATACCGAGGGCAAGCAGTGA

Synonyms

Publications