jgi.p|Nanoce1779_2|613181, mRNA_10913 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613181
Unique NamemRNA_10913
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length625
Alignment locationscaffold_71:46155..47083 +

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Properties
Property NameValue
TranscriptId613267
TrackFilteredModels2
ProteinId613181
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:46155..47083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613181gene_10913Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613181mRNA_10913-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10913CDS_10913Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10913 ID=mRNA_10913|Name=jgi.p|Nanoce1779_2|613181|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
CAGACCCCCTCAAAAAGGATGAGTGTCAACCCCTGTCCAGCCGGCGCCCC
TCCGACCTGGTACCCAGGCGAATGTCTCGTATCATCCACAGACGGTGTGG
ACTTCACACTTTCGCTTGGCCGCCTAAGTCCGTCTCAAGCTACGGCCACT
TGCAAGGCGAAAGGTACCCTCCACTTGACCAACATCCGCCTTCTCTTCAT
TGCCGCCAAGCCCACCCGGAGTCCCGTCCCCAACGGGCCCGAGTTTTCTT
CTTTCGACGTGCCGCTGCGAGGCATTGTCGACGTGAAATTCAACCAGCCC
ATCTTTGGTGCCAATAACTTACAAGGCAAAGTCATGCCTGTCTCCTGCCT
GGGCGCCGCCTCCCCCGTAGACTGGAAGGCGAGGTTTCTGGCGGGAGGGA
CCGACGTTCTGATTCCAAGCCTTCTGCGCCTCATGGACCAGCTCCACCAG
GAGGGGTCGGGAGCGGCCGCGATGGCACAACGGCAGCAACAGCAGCACCA
GCAGCAACAGTTTTGGGGTAGTGGAGGAGGGGGCATCGGAGGAGGGGGTG
GGCTGCCTCCAAATCTATGACGGGCGTTTCAGCTCCTCCTCCTCGTACAG
GCTACCTTCCGTCTCAGCGTCGACC
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protein sequence of jgi.p|Nanoce1779_2|613181

>mRNA_10913-protein ID=mRNA_10913-protein|Name=jgi.p|Nanoce1779_2|613181|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MSVNPCPAGAPPTWYPGECLVSSTDGVDFTLSLGRLSPSQATATCKAKGT
LHLTNIRLLFIAAKPTRSPVPNGPEFSSFDVPLRGIVDVKFNQPIFGANN
LQGKVMPVSCLGAASPVDWKARFLAGGTDVLIPSLLRLMDQLHQEGSGAA
AMAQRQQQQHQQQQFWGSGGGGIGGGGGLPPNL*
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mRNA from alignment at scaffold_71:46155..47083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10913 ID=mRNA_10913|Name=jgi.p|Nanoce1779_2|613181|organism=Nannochloropsis oceanica|type=mRNA|length=929bp|location=Sequence derived from alignment at scaffold_71:46155..47083+ (Nannochloropsis oceanica)
CAGACCCCCTCAAAAAGGATGAGTGTCAACCCCTGTCCAGCCGGCGCCCC
TCCGACCTGGTACCCAGGCGAATGTCTCGTATCATCCACAGACGGTGTGG
ACTTCACACTTTCGCTTGGCCGCCTAAGTCCGTCTCAAGCTACGGCCACT
TGCAAGGCGAAAGGTACCCTCCACTTGACCAACATCCGCCTTCTCTTCAT
TGCCGCCAAGCCCACCCGGAGTCCCGTCCCCAACGGGCCCGAGTTTTCTT
CTTTCGACGTGGTAGGTTATTGGGAAAAAGGGATCCTGGGGAAGAAGGGA
AAATGGGCACAGATGGGATGGACAGATGCCTTGCCCCTTACCTCTTGACT
AAACCTCTCGCTTTCCTCCCTCTACGGTCACAGCCGCTGCGAGGCATTGT
CGACGTGAAATTCAACCAGCCCATCTTTGGTGCCAATAACTTACAAGGCA
AAGTCATGCCTGTCTCCTGCCTGGGCGCCGCCTCCCCCGTAGACTGGAAG
GCGAGGTTTCTGGCGGGAGGGACCGACGTTCTGATTCCAAGCCTTCTGCG
CCTCATGGACCAGCTCCACCAGGAGGGGTCGGGAGCGGCCGCGATGGCAC
AACGGCAGCAACAGCAGCACCAGCAGCAACAGTTTTGGGGTAGTGGAGGA
GGGGGCATCGGAGGAGGGGGTGGGCTGCCTGTGGCACAGGCGGTGGGAGT
GGGGGCAGGGGCCGAGGGAGGGGGATACATGGATCCGAATGATCCATCAC
GCGTGCTTGTGAACGCTCCCATGGTGAGTGCCGAAGAAGGAAGGGAGGAA
GGGAAGGAGGTGTGTAGGGGGAAGGACAGCGTGGAAGGAAGGGTAAAAGC
TTGCATTTACCTCCAAATCTATGACGGGCGTTTCAGCTCCTCCTCCTCGT
ACAGGCTACCTTCCGTCTCAGCGTCGACC
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Coding sequence (CDS) from alignment at scaffold_71:46155..47083+

>mRNA_10913 ID=mRNA_10913|Name=jgi.p|Nanoce1779_2|613181|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at scaffold_71:46155..47083+ (Nannochloropsis oceanica)
ATGAGTGTCAACCCCTGTCCAGCCGGCGCCCCTCCGACCTGGTACCCAGG
CGAATGTCTCGTATCATCCACAGACGGTGTGGACTTCACACTTTCGCTTG
GCCGCCTAAGTCCGTCTCAAGCTACGGCCACTTGCAAGGCGAAAGGTACC
CTCCACTTGACCAACATCCGCCTTCTCTTCATTGCCGCCAAGCCCACCCG
GAGTCCCGTCCCCAACGGGCCCGAGTTTTCTTCTTTCGACGTGCCGCTGC
GAGGCATTGTCGACGTGAAATTCAACCAGCCCATCTTTGGTGCCAATAAC
TTACAAGGCAAAGTCATGCCTGTCTCCTGCCTGGGCGCCGCCTCCCCCGT
AGACTGGAAGGCGAGGTTTCTGGCGGGAGGGACCGACGTTCTGATTCCAA
GCCTTCTGCGCCTCATGGACCAGCTCCACCAGGAGGGGTCGGGAGCGGCC
GCGATGGCACAACGGCAGCAACAGCAGCACCAGCAGCAACAGTTTTGGGG
TAGTGGAGGAGGGGGCATCGGAGGAGGGGGTGGGCTGCCTCCAAATCTAT
GAATGAGTGTCAACCCCTGTCCAGCCGGCGCCCCTCCGACCTGGTACCCA
GGCGAATGTCTCGTATCATCCACAGACGGTGTGGACTTCACACTTTCGCT
TGGCCGCCTAAGTCCGTCTCAAGCTACGGCCACTTGCAAGGCGAAAGGTA
CCCTCCACTTGACCAACATCCGCCTTCTCTTCATTGCCGCCAAGCCCACC
CGGAGTCCCGTCCCCAACGGGCCCGAGTTTTCTTCTTTCGACGTGCCGCT
GCGAGGCATTGTCGACGTGAAATTCAACCAGCCCATCTTTGGTGCCAATA
ACTTACAAGGCAAAGTCATGCCTGTCTCCTGCCTGGGCGCCGCCTCCCCC
GTAGACTGGAAGGCGAGGTTTCTGGCGGGAGGGACCGACGTTCTGATTCC
AAGCCTTCTGCGCCTCATGGACCAGCTCCACCAGGAGGGGTCGGGAGCGG
CCGCGATGGCACAACGGCAGCAACAGCAGCACCAGCAGCAACAGTTTTGG
GGTAGTGGAGGAGGGGGCATCGGAGGAGGGGGTGGGCTGCCTCCAAATCT
ATGAATGAGTGTCAACCCCTGTCCAGCCGGCGCCCCTCCGACCTGGTACC
CAGGCGAATGTCTCGTATCATCCACAGACGGTGTGGACTTCACACTTTCG
CTTGGCCGCCTAAGTCCGTCTCAAGCTACGGCCACTTGCAAGGCGAAAGG
TACCCTCCACTTGACCAACATCCGCCTTCTCTTCATTGCCGCCAAGCCCA
CCCGGAGTCCCGTCCCCAACGGGCCCGAGTTTTCTTCTTTCGACGTGCCG
CTGCGAGGCATTGTCGACGTGAAATTCAACCAGCCCATCTTTGGTGCCAA
TAACTTACAAGGCAAAGTCATGCCTGTCTCCTGCCTGGGCGCCGCCTCCC
CCGTAGACTGGAAGGCGAGGTTTCTGGCGGGAGGGACCGACGTTCTGATT
CCAAGCCTTCTGCGCCTCATGGACCAGCTCCACCAGGAGGGGTCGGGAGC
GGCCGCGATGGCACAACGGCAGCAACAGCAGCACCAGCAGCAACAGTTTT
GGGGTAGTGGAGGAGGGGGCATCGGAGGAGGGGGTGGGCTGCCTCCAAAT
CTATGA
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Synonyms
Publications