scaffold_108, scaffold_108 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_108
Unique Name	scaffold_108
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	41098
Alignment location	jgi.p\|Nanoce1779_2\|30646:14940..19167 +
Alignment location	jgi.p\|Nanoce1779_2\|30646:14940..19167 +
Alignment location	CDS_11613:14955..14962 +
Alignment location	CDS_11613:15253..19102 +
Alignment location	jgi.p\|Nanoce1779_2\|30797:30284..30956 +
Alignment location	jgi.p\|Nanoce1779_2\|30797:30284..30956 +
Alignment location	CDS_11617:30456..30854 +
Alignment location	jgi.p\|Nanoce1779_2\|534530:32355..32588 +
Alignment location	jgi.p\|Nanoce1779_2\|534530:32355..32588 +
Alignment location	CDS_11619:32355..32588 +
Alignment location	jgi.p\|Nanoce1779_2\|561457:22634..24916 -
Alignment location	jgi.p\|Nanoce1779_2\|561457:22634..24916 -
Alignment location	CDS_11615:24520..24916 -
Alignment location	CDS_11615:23009..24405 -
Alignment location	jgi.p\|Nanoce1779_2\|561464:35294..37933 +
Alignment location	jgi.p\|Nanoce1779_2\|561464:35294..37933 +
Alignment location	CDS_11621:35599..35894 +
Alignment location	CDS_11621:36056..37406 +
Alignment location	jgi.p\|Nanoce1779_2\|615836:12211..13457 +
Alignment location	jgi.p\|Nanoce1779_2\|615836:12211..13457 +
Alignment location	CDS_11611:13022..13354 +
Alignment location	jgi.p\|Nanoce1779_2\|615852:25272..26225 +
Alignment location	jgi.p\|Nanoce1779_2\|615852:25272..26225 +
Alignment location	CDS_11616:25443..26201 +
Alignment location	jgi.p\|Nanoce1779_2\|615861:38242..40673 -
Alignment location	jgi.p\|Nanoce1779_2\|615861:38242..40673 -
Alignment location	CDS_11622:38831..40537 -
Alignment location	jgi.p\|Nanoce1779_2\|646799:20301..22302 -
Alignment location	jgi.p\|Nanoce1779_2\|646799:20301..22302 -
Alignment location	CDS_11614:22273..22302 -
Alignment location	CDS_11614:20443..22128 -
Alignment location	jgi.p\|Nanoce1779_2\|646820:33456..35262 -
Alignment location	jgi.p\|Nanoce1779_2\|646820:33456..35262 -
Alignment location	CDS_11620:34795..34840 -
Alignment location	CDS_11620:33810..34287 -
Alignment location	CDS_11620:33456..33588 -
Alignment location	jgi.p\|Nanoce1779_2\|675444:139..6542 +
Alignment location	jgi.p\|Nanoce1779_2\|675444:139..6542 +
Alignment location	CDS_11610:139..390 +
Alignment location	CDS_11610:2414..2482 +
Alignment location	CDS_11610:2598..2682 +
Alignment location	CDS_11610:2884..3439 +
Alignment location	CDS_11610:3665..3734 +
Alignment location	CDS_11610:4240..5251 +
Alignment location	CDS_11610:5360..5765 +
Alignment location	CDS_11610:5854..6059 +
Alignment location	CDS_11610:6183..6412 +
Alignment location	jgi.p\|Nanoce1779_2\|675449:30941..32188 +
Alignment location	jgi.p\|Nanoce1779_2\|675449:30941..32188 +
Alignment location	CDS_11618:30965..31108 +
Alignment location	CDS_11618:31462..31621 +
Alignment location	CDS_11618:31903..32067 +
Alignment location	CDS_11618:32148..32188 +
Alignment location	jgi.p\|Nanoce1779_2\|30646:14955..19102 +
Alignment location	jgi.p\|Nanoce1779_2\|30797:30456..30854 +
Alignment location	jgi.p\|Nanoce1779_2\|534530:32355..32588 +
Alignment location	jgi.p\|Nanoce1779_2\|561457:23009..24916 -
Alignment location	jgi.p\|Nanoce1779_2\|561464:35599..37406 +
Alignment location	jgi.p\|Nanoce1779_2\|615836:13022..13354 +
Alignment location	jgi.p\|Nanoce1779_2\|615852:25443..26201 +
Alignment location	jgi.p\|Nanoce1779_2\|615861:38831..40537 -
Alignment location	jgi.p\|Nanoce1779_2\|646799:20443..22302 -
Alignment location	jgi.p\|Nanoce1779_2\|646820:33456..34840 -
Alignment location	jgi.p\|Nanoce1779_2\|675444:139..6412 +
Alignment location	jgi.p\|Nanoce1779_2\|675449:30965..32188 +
Alignment location	ncniL057:140..37933 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|30646	gene	jgi.p\|Nanoce1779_2\|30646:14940..19167 +
jgi.p\|Nanoce1779_2\|30646	mRNA	jgi.p\|Nanoce1779_2\|30646:14940..19167 +
CDS_11613	CDS	CDS_11613:14955..14962 +
CDS_11613	CDS	CDS_11613:15253..19102 +
jgi.p\|Nanoce1779_2\|30797	gene	jgi.p\|Nanoce1779_2\|30797:30284..30956 +
jgi.p\|Nanoce1779_2\|30797	mRNA	jgi.p\|Nanoce1779_2\|30797:30284..30956 +
CDS_11617	CDS	CDS_11617:30456..30854 +
jgi.p\|Nanoce1779_2\|534530	gene	jgi.p\|Nanoce1779_2\|534530:32355..32588 +
jgi.p\|Nanoce1779_2\|534530	mRNA	jgi.p\|Nanoce1779_2\|534530:32355..32588 +
CDS_11619	CDS	CDS_11619:32355..32588 +
jgi.p\|Nanoce1779_2\|561457	gene	jgi.p\|Nanoce1779_2\|561457:22634..24916 -
jgi.p\|Nanoce1779_2\|561457	mRNA	jgi.p\|Nanoce1779_2\|561457:22634..24916 -
CDS_11615	CDS	CDS_11615:24520..24916 -
CDS_11615	CDS	CDS_11615:23009..24405 -
jgi.p\|Nanoce1779_2\|561464	gene	jgi.p\|Nanoce1779_2\|561464:35294..37933 +
jgi.p\|Nanoce1779_2\|561464	mRNA	jgi.p\|Nanoce1779_2\|561464:35294..37933 +
CDS_11621	CDS	CDS_11621:35599..35894 +
CDS_11621	CDS	CDS_11621:36056..37406 +
jgi.p\|Nanoce1779_2\|615836	gene	jgi.p\|Nanoce1779_2\|615836:12211..13457 +
jgi.p\|Nanoce1779_2\|615836	mRNA	jgi.p\|Nanoce1779_2\|615836:12211..13457 +
CDS_11611	CDS	CDS_11611:13022..13354 +
jgi.p\|Nanoce1779_2\|615852	gene	jgi.p\|Nanoce1779_2\|615852:25272..26225 +
jgi.p\|Nanoce1779_2\|615852	mRNA	jgi.p\|Nanoce1779_2\|615852:25272..26225 +
CDS_11616	CDS	CDS_11616:25443..26201 +
jgi.p\|Nanoce1779_2\|615861	gene	jgi.p\|Nanoce1779_2\|615861:38242..40673 -
jgi.p\|Nanoce1779_2\|615861	mRNA	jgi.p\|Nanoce1779_2\|615861:38242..40673 -
CDS_11622	CDS	CDS_11622:38831..40537 -
jgi.p\|Nanoce1779_2\|646799	gene	jgi.p\|Nanoce1779_2\|646799:20301..22302 -
jgi.p\|Nanoce1779_2\|646799	mRNA	jgi.p\|Nanoce1779_2\|646799:20301..22302 -
CDS_11614	CDS	CDS_11614:22273..22302 -
CDS_11614	CDS	CDS_11614:20443..22128 -
jgi.p\|Nanoce1779_2\|646820	gene	jgi.p\|Nanoce1779_2\|646820:33456..35262 -
jgi.p\|Nanoce1779_2\|646820	mRNA	jgi.p\|Nanoce1779_2\|646820:33456..35262 -
CDS_11620	CDS	CDS_11620:34795..34840 -
CDS_11620	CDS	CDS_11620:33810..34287 -
CDS_11620	CDS	CDS_11620:33456..33588 -
jgi.p\|Nanoce1779_2\|675444	gene	jgi.p\|Nanoce1779_2\|675444:139..6542 +
jgi.p\|Nanoce1779_2\|675444	mRNA	jgi.p\|Nanoce1779_2\|675444:139..6542 +
CDS_11610	CDS	CDS_11610:139..390 +
CDS_11610	CDS	CDS_11610:2414..2482 +
CDS_11610	CDS	CDS_11610:2598..2682 +
CDS_11610	CDS	CDS_11610:2884..3439 +
CDS_11610	CDS	CDS_11610:3665..3734 +
CDS_11610	CDS	CDS_11610:4240..5251 +
CDS_11610	CDS	CDS_11610:5360..5765 +
CDS_11610	CDS	CDS_11610:5854..6059 +
CDS_11610	CDS	CDS_11610:6183..6412 +
jgi.p\|Nanoce1779_2\|675449	gene	jgi.p\|Nanoce1779_2\|675449:30941..32188 +
jgi.p\|Nanoce1779_2\|675449	mRNA	jgi.p\|Nanoce1779_2\|675449:30941..32188 +
CDS_11618	CDS	CDS_11618:30965..31108 +
CDS_11618	CDS	CDS_11618:31462..31621 +
CDS_11618	CDS	CDS_11618:31903..32067 +
CDS_11618	CDS	CDS_11618:32148..32188 +
jgi.p\|Nanoce1779_2\|30646	polypeptide	jgi.p\|Nanoce1779_2\|30646:14955..19102 +
jgi.p\|Nanoce1779_2\|30797	polypeptide	jgi.p\|Nanoce1779_2\|30797:30456..30854 +
jgi.p\|Nanoce1779_2\|534530	polypeptide	jgi.p\|Nanoce1779_2\|534530:32355..32588 +
jgi.p\|Nanoce1779_2\|561457	polypeptide	jgi.p\|Nanoce1779_2\|561457:23009..24916 -
jgi.p\|Nanoce1779_2\|561464	polypeptide	jgi.p\|Nanoce1779_2\|561464:35599..37406 +
jgi.p\|Nanoce1779_2\|615836	polypeptide	jgi.p\|Nanoce1779_2\|615836:13022..13354 +
jgi.p\|Nanoce1779_2\|615852	polypeptide	jgi.p\|Nanoce1779_2\|615852:25443..26201 +
jgi.p\|Nanoce1779_2\|615861	polypeptide	jgi.p\|Nanoce1779_2\|615861:38831..40537 -
jgi.p\|Nanoce1779_2\|646799	polypeptide	jgi.p\|Nanoce1779_2\|646799:20443..22302 -
jgi.p\|Nanoce1779_2\|646820	polypeptide	jgi.p\|Nanoce1779_2\|646820:33456..34840 -
jgi.p\|Nanoce1779_2\|675444	polypeptide	jgi.p\|Nanoce1779_2\|675444:139..6412 +
jgi.p\|Nanoce1779_2\|675449	polypeptide	jgi.p\|Nanoce1779_2\|675449:30965..32188 +
ncniL057	syntenic_region	ncniL057:140..37933 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications