jgi.p|Nanoce1779_2|646820, mRNA_11620 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|646820
Unique NamemRNA_11620
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_108:33456..35262 -

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Properties
Property NameValue
TranscriptId646906
TrackFilteredModels2
ProteinId646820
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:33456..35262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646820gene_11620Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646820mRNA_11620-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11620CDS_11620Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11620 ID=mRNA_11620|Name=jgi.p|Nanoce1779_2|646820|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
GTGGCCAGCATTCATTCTTTCTCCTCGCCTCGCTATGCCTTTCCACGGTC
TTTTCCATGCTCTCCAGCTTGGGCAGTCGACGTGCAGGGAGATATGTATT
CATATGCAGTGCATGCTTGAAACTCTGAGCCTCTCCACGTCCCCTCAGTT
CAGACTCATCACGACTCGATGGACGAGAGGGGAGCCGAAAGAGCGGTGGG
AGGCGATGATGAAGGGGCGAAGCCTTCTTAATCATGCATTAGAAAGCCAC
CCAAGCCTAGCAATGTAAATATGCCTGTATTTGCATGAGTCTGAGCATGT
GGCTGTCAAGCCGCCCTGGCTGGCTTTGCTTGTCTGGGCCCCAAACAATC
TTCAGCATCATTCTCACATGCCCCCATCTTCTTCCCCTCCCCAACCCCCA
CCTCACATCGACATAGGCAAAGATGAAGCTTATTCTTGCCACCAAATACG
TCAACATCCCTGAGGGAGTGACGATGACCATTAAGTCCCGCCACGTGACG
GTCAAGGGTCCCCGTGGCGAGCTGTCGCGAGGGTTTAAGCACTTAAACCT
GGCCTTCGAGTTGGTGGGCGGAAACAAGGACAAGGGCACGAATCCCAAGA
AGCTGAAGGTGGACCTCTGGTTCGGTAACCGCAAGCAGCTGGCGACCATT
CGTACCGTGTGCTCCCACTTTGAGAACCTCATCACGGGCGTGACCAAGGG
GTTCTTGTACAAGATGCGGTTTGTGTACGCCCATTTCCCTATCAATGTAT
CGCTGACGGACAAGACTGTGGAGGTCCGAAATTTCTTGGGGGAGAAAGCG
GGTGCGACGCGTGGAGCTGCTGCCCGGAGTAAGAGTACGTCCGCACATCT
GATTGTCAAGGACCAGATCGAGTTGAAGGGAAATGACCTGACCACCGTTT
CGCTGACGGCCGCTAGGATCCAACAGTGCACCACTGTAAAGCGCAAGGAT
ATCCGTAAATTTTTGGACGGTATCTACGTCTCTCACAAGGGTCACATTGT
CGAAATCCGATTAAGGCGGAGGAGAAGCGGCAGCAGCAGCTGTATAGCAG
CAGCAATAGCAAGAGGAGGGCAGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|646820

>mRNA_11620-protein ID=mRNA_11620-protein|Name=jgi.p|Nanoce1779_2|646820|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MKLILATKYVNIPEGVTMTIKSRHVTVKGPRGELSRGFKHLNLAFELVGG
NKDKGTNPKKLKVDLWFGNRKQLATIRTVCSHFENLITGVTKGFLYKMRF
VYAHFPINVSLTDKTVEVRNFLGEKAGATRGAAARSKSTSAHLIVKDQIE
LKGNDLTTVSLTAARIQQCTTVKRKDIRKFLDGIYVSHKGHIVEIRLRRR
RSGSSSCIAAAIARGGQE*
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mRNA from alignment at scaffold_108:33456..35262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11620 ID=mRNA_11620|Name=jgi.p|Nanoce1779_2|646820|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp|location=Sequence derived from alignment at scaffold_108:33456..35262- (Nannochloropsis oceanica)
GTGGCCAGCATTCATTCTTTCTCCTCGCCTCGCTATGCCTTTCCACGGTC
TTTTCCATGCTCTCCAGCTTGGGCAGTCGACGTGCAGGGAGATATGTATT
CATATGCAGTGCATGCTTGAAACTCTGAGCCTCTCCACGTCCCCTCAGTT
CAGACTCATCACGACTCGATGGACGAGAGGGGAGCCGAAAGAGCGGTGGG
AGGCGATGATGAAGGGGCGAAGCCTTCTTAATCATGCATTAGAAAGCCAC
CCAAGCCTAGCAATGTAAATATGCCTGTATTTGCATGAGTCTGAGCATGT
GGCTGTCAAGCCGCCCTGGCTGGCTTTGCTTGTCTGGGCCCCAAACAATC
TTCAGCATCATTCTCACATGCCCCCATCTTCTTCCCCTCCCCAACCCCCA
CCTCACATCGACATAGGCAAAGATGAAGCTTATTCTTGCCACCAAATACG
TCAACATCCCTGAGGGAGGTACGTACAAATAGCGAACGCGTAGGAAGGGA
GGCAGGCAGGGTCAGAGTGAGGTGTGTGGGTGGGATTACGAGTAGAAACG
CGAAGGAAGAAGAGGAGTCTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTTCTTGAGGGCAGACGAATAATTTCGCGTTGAGGAATTGAT
ATCTGGTGATTGGGCGTATGGTCTCTTTCATCTTTAAGCTTATATGGCTC
GCCCAGCCTGCGTAGTGGGGCATGAGCTGCATGGTGCTGGGATGCCAGGG
CTGTTGGCGTGAGCGAGCTTTCATGCCTGTATCGCTCTTGCTATTCGTAT
CTCTTTCCACCAGGGCACGGATGATTGTCAAACATGTCAAGAGAGTATAT
ATCTATTCTTTGCATGTCTGTTTAGATGCATGCGTGCTGCTCTGTGTCCA
TTGTTTGTCGGTCTTAGTTGTCCTGTCATTAACCCTTCACTCACTCCCCC
TTCCTTCCCTTTCTCCTTTCCTCAGTGACGATGACCATTAAGTCCCGCCA
CGTGACGGTCAAGGGTCCCCGTGGCGAGCTGTCGCGAGGGTTTAAGCACT
TAAACCTGGCCTTCGAGTTGGTGGGCGGAAACAAGGACAAGGGCACGAAT
CCCAAGAAGCTGAAGGTGGACCTCTGGTTCGGTAACCGCAAGCAGCTGGC
GACCATTCGTACCGTGTGCTCCCACTTTGAGAACCTCATCACGGGCGTGA
CCAAGGGGTTCTTGTACAAGATGCGGTTTGTGTACGCCCATTTCCCTATC
AATGTATCGCTGACGGACAAGACTGTGGAGGTCCGAAATTTCTTGGGGGA
GAAAGCGGGTGCGACGCGTGGAGCTGCTGCCCGGAGTAAGAGTACGTCCG
CACATCTGATTGTCAAGGACCAGATCGAGTTGAAGGGAAATGACCTGACC
ACCGTTTCGCTGACGGCCGCTAGGATCCAACAGTGCACCACTGTAAAGCG
CAAGTACGTGTTTTGGGAGGGGGAAAGAGGGAGGGAAGAAGGTGTCGGTT
CCTGCGGTTCCTGCGGCTTTGCTTGCGTTTGGAAGTTTGTCTTTTGAAAG
GAAATACCATTGGTGAAGGAAGGCTGGAAGTTCGGAAGATCCCGTTGGGA
GCTATATACATGAAACAACCCCTCACCCGCCCTCCTCCACCGCTTCCTCC
TCCTTCTCTCCCTCCCTCCCACAGGGATATCCGTAAATTTTTGGACGGTA
TCTACGTCTCTCACAAGGGTCACATTGTCGAAATCCGATTAAGGCGGAGG
AGAAGCGGCAGCAGCAGCTGTATAGCAGCAGCAATAGCAAGAGGAGGGCA
GGAGTAG
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Coding sequence (CDS) from alignment at scaffold_108:33456..35262-

>mRNA_11620 ID=mRNA_11620|Name=jgi.p|Nanoce1779_2|646820|organism=Nannochloropsis oceanica|type=CDS|length=1971bp|location=Sequence derived from alignment at scaffold_108:33456..35262- (Nannochloropsis oceanica)
GGATATCCGTAAATTTTTGGACGGTATCTACGTCTCTCACAAGGGTCACA
TTGTCGAAATCCGATTAAGGCGGAGGAGAAGCGGCAGCAGCAGCTGTATA
GCAGCAGCAATAGCAAGAGGAGGGCAGGAGTAGTGACGATGACCATTAAG
TCCCGCCACGTGACGGTCAAGGGTCCCCGTGGCGAGCTGTCGCGAGGGTT
TAAGCACTTAAACCTGGCCTTCGAGTTGGTGGGCGGAAACAAGGACAAGG
GCACGAATCCCAAGAAGCTGAAGGTGGACCTCTGGTTCGGTAACCGCAAG
CAGCTGGCGACCATTCGTACCGTGTGCTCCCACTTTGAGAACCTCATCAC
GGGCGTGACCAAGGGGTTCTTGTACAAGATGCGGTTTGTGTACGCCCATT
TCCCTATCAATGTATCGCTGACGGACAAGACTGTGGAGGTCCGAAATTTC
TTGGGGGAGAAAGCGGGTGCGACGCGTGGAGCTGCTGCCCGGAGTAAGAG
TACGTCCGCACATCTGATTGTCAAGGACCAGATCGAGTTGAAGGGAAATG
ACCTGACCACCGTTTCGCTGACGGCCGCTAGGATCCAACAGTGCACCACT
GTAAAGCGCAAATGAAGCTTATTCTTGCCACCAAATACGTCAACATCCCT
GAGGGAGGGATATCCGTAAATTTTTGGACGGTATCTACGTCTCTCACAAG
GGTCACATTGTCGAAATCCGATTAAGGCGGAGGAGAAGCGGCAGCAGCAG
CTGTATAGCAGCAGCAATAGCAAGAGGAGGGCAGGAGTAGTGACGATGAC
CATTAAGTCCCGCCACGTGACGGTCAAGGGTCCCCGTGGCGAGCTGTCGC
GAGGGTTTAAGCACTTAAACCTGGCCTTCGAGTTGGTGGGCGGAAACAAG
GACAAGGGCACGAATCCCAAGAAGCTGAAGGTGGACCTCTGGTTCGGTAA
CCGCAAGCAGCTGGCGACCATTCGTACCGTGTGCTCCCACTTTGAGAACC
TCATCACGGGCGTGACCAAGGGGTTCTTGTACAAGATGCGGTTTGTGTAC
GCCCATTTCCCTATCAATGTATCGCTGACGGACAAGACTGTGGAGGTCCG
AAATTTCTTGGGGGAGAAAGCGGGTGCGACGCGTGGAGCTGCTGCCCGGA
GTAAGAGTACGTCCGCACATCTGATTGTCAAGGACCAGATCGAGTTGAAG
GGAAATGACCTGACCACCGTTTCGCTGACGGCCGCTAGGATCCAACAGTG
CACCACTGTAAAGCGCAAATGAAGCTTATTCTTGCCACCAAATACGTCAA
CATCCCTGAGGGAGGGATATCCGTAAATTTTTGGACGGTATCTACGTCTC
TCACAAGGGTCACATTGTCGAAATCCGATTAAGGCGGAGGAGAAGCGGCA
GCAGCAGCTGTATAGCAGCAGCAATAGCAAGAGGAGGGCAGGAGTAGTGA
CGATGACCATTAAGTCCCGCCACGTGACGGTCAAGGGTCCCCGTGGCGAG
CTGTCGCGAGGGTTTAAGCACTTAAACCTGGCCTTCGAGTTGGTGGGCGG
AAACAAGGACAAGGGCACGAATCCCAAGAAGCTGAAGGTGGACCTCTGGT
TCGGTAACCGCAAGCAGCTGGCGACCATTCGTACCGTGTGCTCCCACTTT
GAGAACCTCATCACGGGCGTGACCAAGGGGTTCTTGTACAAGATGCGGTT
TGTGTACGCCCATTTCCCTATCAATGTATCGCTGACGGACAAGACTGTGG
AGGTCCGAAATTTCTTGGGGGAGAAAGCGGGTGCGACGCGTGGAGCTGCT
GCCCGGAGTAAGAGTACGTCCGCACATCTGATTGTCAAGGACCAGATCGA
GTTGAAGGGAAATGACCTGACCACCGTTTCGCTGACGGCCGCTAGGATCC
AACAGTGCACCACTGTAAAGCGCAAATGAAGCTTATTCTTGCCACCAAAT
ACGTCAACATCCCTGAGGGAG
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Synonyms
Publications