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Properties
| Property Name | Value |
|---|
| TranscriptId | 561550 |
| Track | FilteredModels2 |
| ProteinId | 561464 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:35294..37933 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11621 ID=mRNA_11621|Name=jgi.p|Nanoce1779_2|561464|organism=Nannochloropsis oceanica|type=mRNA|length=2479bp
CCTCGGTCCACAAGCGCTTGCCTTGCCTGCTCGCCTCCCCCTCGCTACTT
TCTTCTCTGAGCGCGCAATGGAACACGCATGTGTGATTTTGTTTTGGGAG
AATGGGGGGCGGGCTTTGTACTTATGTGTTGTGGACAGCCATTGGCAGGT
AGGGCACAATTTGGAGATGCAACACTCGTTGACGCTTTCCTTCACCCACT
TTCACATGCTGCCCCTGTCCGCCTTGTTTCCCAGCAAACCAGCAGACTTC
TCATAGCCTCGTTCGAGCTGCTGTGTCGAGTATCACACAGTAAACGCACA
CGACCATGCCGCGTCCTGCGCTCCTCCTTCTCATAAGTCTCGCCCTGACA
AGCACCATCACAACCACCGCCTTCTCTACCCCCCGCGTCAGCCCGCTCTT
CCGTAGTCTCTTCCCCTCTCAAGGGAAGACACCTACCACGACCCCTCCCA
AGGCGGTCGGACCCTTTGCGACCATCGAGCAACCTGCCCCCATCACCACC
TCCGCACCAGTAGCAGCAAGCGTGCCGTCCACCTCCACGTCGCTGCAGCC
CTTTGGTGGTGCTCAAGGGAGCGGTGCTCCGATCGACTGGTGGCGGCAAT
GGTACCCTATGGCCTTCCTGGACGACCTGGACCCGAAACGTCCCACGCAA
GTCGAACTTCTTGGCAAGCTCTTCGTTATTTGGGCCGACCACGACAAAAC
CTGGCATGCATTTGAAGACCAGTGCCCTCATCGTCTCGCCCCCCTCTCCG
AAGGGCGGATCGATGAGCGTGGGAACCTGCAATGCGCCTATCACGGTTGG
TCTTTCTCCGGACAGGGTGGTAACGTCAACATCCCCCAAGCCGAACCTGA
GATCAAAGCAGTCGCTGAACGCTCGAGCCGCGCCTGCGCGAAAGTTGTTC
CCCTCATGGTCGCTCAGGGTATGGCGTGGCTGTGGCCTGACAATAGTCTG
GAAGGGATGGAAGCGTCTCGAGGGGTGTTGCCCAGCACGGTGCCCGAATT
GAACGACCCGAGTTTCATCAAGGGGGCGTGGGTGACGAGAGATTTGATGT
ATGGCTACGATACGTTGGTTGAGAATGTGGTAGACCCGGCCCATGTCCCT
TTTGCCCACCATGGGGTGCAAGCCCAACGGTCGATGGCCATGCCTTTGAA
TGTCAGCTTAAATCACGTTGGGCGGGAAGGCGTATTTTTGTCCCTCCCCC
GGCTGGCCAACAGCACGATTGAGTTCCATGCCCCGACGCGGCTGCATTAC
CAGTTTGATTTCTCCGGCTTCTTCGCACGGATCCCTTTCATGAAGTGGTC
GTGGGCGATTGAAAAGAAGCTGCGAAGGCTGCCACCTGACACTCCTCCCC
GGTCATCCCTCGTCTCGTACACCATTCCGGTCGGCCCCGGGAGGAGTCGA
ATTCTGGCGCTCTTTCCCCGAAATTTCTTCGCGATGAACAAGCCAAGGTG
GATGGATCACTTGGAGAGGAATGCGGTACTGGACGGGGATTTGGTGTTTT
TGCACGGTCAAGAACGCGAAATGCGACGGCCGGAATTGAAGTGGGAGGAG
AACATCGACCGGGCGTTTTATATGCCGACTAAAAGCGATGAGGGCGTGCG
GGCTTTCAGGCAGTGGATTGTCAAGTGGGGAGGGGGAGGGCCTAGGTGGG
CGGAGGGTGTGGATCCCTCCCTACCTCCCCGGAGTGTGGATAGAGAGTTT
TTGATGGATCGGTACAATCAACACACGAAGCAGTGCTCGGCGTGCAAAGG
CGCTTTGCAGAACATTCGGATTTTGAAAGGAGTGATGACTGTAGGGGCCC
TGGTGTGCGCAACGGCCGTGTGGACCCCGCGTCCCGCGAAGATGCTCGCG
AAGATTTTGGGGGCGGGTCTGGCCCAGCTGATGGTGGCCTGGCAGTGTGT
TAGGCTAGAGAAGCGGATGGTGTTTATTGATTATATTCATGCCGAGAAAT
AGGGAGGTAGGGATGAAGTGAAGATCGAGAAATGAGTTGTGTGACACAGT
GTTGCTTGATAATGTTTTTGGGGGTGTTATGGGGGGGATGAGAGAAGGTA
GGGGAAGACGACGACGAGAACGAGCACGTATGATCTTCCCCTCCGCTCCC
ACGTGTACAGCTGCTACAGCAGGAAAACACCAGTAGCGGAAAAAGGCGGA
AGAAAAAGAAGAAATATGCAGAAGCACCTTCAAGATAAATTAGAGAATAT
GAAGAGGAAGAGCGGAGAGGAGGATGAGGAAAATAAGGAGGAGACGATGA
CAAGGACGACGAAAAGATCAGGGCGAAAAGAGGGTTTCTAAAAAGAGTGA
GTGCCTCAATTCTCTGGTTTAGCGAAGTAGATTTGTCTGTATGTGTGAGA
GAGATTGCGAGAAAGTGTGCCGCTTACCATCATCTTGCTCTAGGGGCGCT
ATCTCAATCTCTCGTCGGGTGATTTATGACGTGTAAAGAATGATGAAAAG
AATGAAGAAGAGTGGAAGTCTGGGAAGAC back to topprotein sequence of jgi.p|Nanoce1779_2|561464 >mRNA_11621-protein ID=mRNA_11621-protein|Name=jgi.p|Nanoce1779_2|561464|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MPRPALLLLISLALTSTITTTAFSTPRVSPLFRSLFPSQGKTPTTTPPKA
VGPFATIEQPAPITTSAPVAASVPSTSTSLQPFGGAQGSGAPIDWWRQWY
PMAFLDDLDPKRPTQVELLGKLFVIWADHDKTWHAFEDQCPHRLAPLSEG
RIDERGNLQCAYHGWSFSGQGGNVNIPQAEPEIKAVAERSSRACAKVVPL
MVAQGMAWLWPDNSLEGMEASRGVLPSTVPELNDPSFIKGAWVTRDLMYG
YDTLVENVVDPAHVPFAHHGVQAQRSMAMPLNVSLNHVGREGVFLSLPRL
ANSTIEFHAPTRLHYQFDFSGFFARIPFMKWSWAIEKKLRRLPPDTPPRS
SLVSYTIPVGPGRSRILALFPRNFFAMNKPRWMDHLERNAVLDGDLVFLH
GQEREMRRPELKWEENIDRAFYMPTKSDEGVRAFRQWIVKWGGGGPRWAE
GVDPSLPPRSVDREFLMDRYNQHTKQCSACKGALQNIRILKGVMTVGALV
CATAVWTPRPAKMLAKILGAGLAQLMVAWQCVRLEKRMVFIDYIHAEK* back to topmRNA from alignment at scaffold_108:35294..37933+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11621 ID=mRNA_11621|Name=jgi.p|Nanoce1779_2|561464|organism=Nannochloropsis oceanica|type=mRNA|length=2640bp|location=Sequence derived from alignment at scaffold_108:35294..37933+ (Nannochloropsis oceanica)
CCTCGGTCCACAAGCGCTTGCCTTGCCTGCTCGCCTCCCCCTCGCTACTT
TCTTCTCTGAGCGCGCAATGGAACACGCATGTGTGATTTTGTTTTGGGAG
AATGGGGGGCGGGCTTTGTACTTATGTGTTGTGGACAGCCATTGGCAGGT
AGGGCACAATTTGGAGATGCAACACTCGTTGACGCTTTCCTTCACCCACT
TTCACATGCTGCCCCTGTCCGCCTTGTTTCCCAGCAAACCAGCAGACTTC
TCATAGCCTCGTTCGAGCTGCTGTGTCGAGTATCACACAGTAAACGCACA
CGACCATGCCGCGTCCTGCGCTCCTCCTTCTCATAAGTCTCGCCCTGACA
AGCACCATCACAACCACCGCCTTCTCTACCCCCCGCGTCAGCCCGCTCTT
CCGTAGTCTCTTCCCCTCTCAAGGGAAGACACCTACCACGACCCCTCCCA
AGGCGGTCGGACCCTTTGCGACCATCGAGCAACCTGCCCCCATCACCACC
TCCGCACCAGTAGCAGCAAGCGTGCCGTCCACCTCCACGTCGCTGCAGCC
CTTTGGTGGTGCTCAAGGGAGCGGTGCTCCGATCGACTGGTGGCGGCAAT
GGTGAGTGTGTGTGTCCTTCTCAGACGAGCTTTCTCCCCTCAAGCTTCTA
GACTCAAGGATACTGAAGAGTACTATGAGCGATCAATGGAAAACCTGATA
GCTAGATTTGAAATATTTGCCCCTCCCTCTCTCCTTTCCCGCCCTCCCTC
CCCTACCTCCAGGTACCCTATGGCCTTCCTGGACGACCTGGACCCGAAAC
GTCCCACGCAAGTCGAACTTCTTGGCAAGCTCTTCGTTATTTGGGCCGAC
CACGACAAAACCTGGCATGCATTTGAAGACCAGTGCCCTCATCGTCTCGC
CCCCCTCTCCGAAGGGCGGATCGATGAGCGTGGGAACCTGCAATGCGCCT
ATCACGGTTGGTCTTTCTCCGGACAGGGTGGTAACGTCAACATCCCCCAA
GCCGAACCTGAGATCAAAGCAGTCGCTGAACGCTCGAGCCGCGCCTGCGC
GAAAGTTGTTCCCCTCATGGTCGCTCAGGGTATGGCGTGGCTGTGGCCTG
ACAATAGTCTGGAAGGGATGGAAGCGTCTCGAGGGGTGTTGCCCAGCACG
GTGCCCGAATTGAACGACCCGAGTTTCATCAAGGGGGCGTGGGTGACGAG
AGATTTGATGTATGGCTACGATACGTTGGTTGAGAATGTGGTAGACCCGG
CCCATGTCCCTTTTGCCCACCATGGGGTGCAAGCCCAACGGTCGATGGCC
ATGCCTTTGAATGTCAGCTTAAATCACGTTGGGCGGGAAGGCGTATTTTT
GTCCCTCCCCCGGCTGGCCAACAGCACGATTGAGTTCCATGCCCCGACGC
GGCTGCATTACCAGTTTGATTTCTCCGGCTTCTTCGCACGGATCCCTTTC
ATGAAGTGGTCGTGGGCGATTGAAAAGAAGCTGCGAAGGCTGCCACCTGA
CACTCCTCCCCGGTCATCCCTCGTCTCGTACACCATTCCGGTCGGCCCCG
GGAGGAGTCGAATTCTGGCGCTCTTTCCCCGAAATTTCTTCGCGATGAAC
AAGCCAAGGTGGATGGATCACTTGGAGAGGAATGCGGTACTGGACGGGGA
TTTGGTGTTTTTGCACGGTCAAGAACGCGAAATGCGACGGCCGGAATTGA
AGTGGGAGGAGAACATCGACCGGGCGTTTTATATGCCGACTAAAAGCGAT
GAGGGCGTGCGGGCTTTCAGGCAGTGGATTGTCAAGTGGGGAGGGGGAGG
GCCTAGGTGGGCGGAGGGTGTGGATCCCTCCCTACCTCCCCGGAGTGTGG
ATAGAGAGTTTTTGATGGATCGGTACAATCAACACACGAAGCAGTGCTCG
GCGTGCAAAGGCGCTTTGCAGAACATTCGGATTTTGAAAGGAGTGATGAC
TGTAGGGGCCCTGGTGTGCGCAACGGCCGTGTGGACCCCGCGTCCCGCGA
AGATGCTCGCGAAGATTTTGGGGGCGGGTCTGGCCCAGCTGATGGTGGCC
TGGCAGTGTGTTAGGCTAGAGAAGCGGATGGTGTTTATTGATTATATTCA
TGCCGAGAAATAGGGAGGTAGGGATGAAGTGAAGATCGAGAAATGAGTTG
TGTGACACAGTGTTGCTTGATAATGTTTTTGGGGGTGTTATGGGGGGGAT
GAGAGAAGGTAGGGGAAGACGACGACGAGAACGAGCACGTATGATCTTCC
CCTCCGCTCCCACGTGTACAGCTGCTACAGCAGGAAAACACCAGTAGCGG
AAAAAGGCGGAAGAAAAAGAAGAAATATGCAGAAGCACCTTCAAGATAAA
TTAGAGAATATGAAGAGGAAGAGCGGAGAGGAGGATGAGGAAAATAAGGA
GGAGACGATGACAAGGACGACGAAAAGATCAGGGCGAAAAGAGGGTTTCT
AAAAAGAGTGAGTGCCTCAATTCTCTGGTTTAGCGAAGTAGATTTGTCTG
TATGTGTGAGAGAGATTGCGAGAAAGTGTGCCGCTTACCATCATCTTGCT
CTAGGGGCGCTATCTCAATCTCTCGTCGGGTGATTTATGACGTGTAAAGA
ATGATGAAAAGAATGAAGAAGAGTGGAAGTCTGGGAAGAC back to topCoding sequence (CDS) from alignment at scaffold_108:35294..37933+ >mRNA_11621 ID=mRNA_11621|Name=jgi.p|Nanoce1779_2|561464|organism=Nannochloropsis oceanica|type=CDS|length=3294bp|location=Sequence derived from alignment at scaffold_108:35294..37933+ (Nannochloropsis oceanica)
ATGCCGCGTCCTGCGCTCCTCCTTCTCATAAGTCTCGCCCTGACAAGCAC
CATCACAACCACCGCCTTCTCTACCCCCCGCGTCAGCCCGCTCTTCCGTA
GTCTCTTCCCCTCTCAAGGGAAGACACCTACCACGACCCCTCCCAAGGCG
GTCGGACCCTTTGCGACCATCGAGCAACCTGCCCCCATCACCACCTCCGC
ACCAGTAGCAGCAAGCGTGCCGTCCACCTCCACGTCGCTGCAGCCCTTTG
GTGGTGCTCAAGGGAGCGGTGCTCCGATCGACTGGTGGCGGCAATGGTAC
CCTATGGCCTTCCTGGACGACCTGGACCCGAAACGTCCCACGCAAGTCGA
ACTTCTTGGCAAGCTCTTCGTTATTTGGGCCGACCACGACAAAACCTGGC
ATGCATTTGAAGACCAGTGCCCTCATCGTCTCGCCCCCCTCTCCGAAGGG
CGGATCGATGAGCGTGGGAACCTGCAATGCGCCTATCACGGTTGGTCTTT
CTCCGGACAGGGTGGTAACGTCAACATCCCCCAAGCCGAACCTGAGATCA
AAGCAGTCGCTGAACGCTCGAGCCGCGCCTGCGCGAAAGTTGTTCCCCTC
ATGGTCGCTCAGGGTATGGCGTGGCTGTGGCCTGACAATAGTCTGGAAGG
GATGGAAGCGTCTCGAGGGGTGTTGCCCAGCACGGTGCCCGAATTGAACG
ACCCGAGTTTCATCAAGGGGGCGTGGGTGACGAGAGATTTGATGTATGGC
TACGATACGTTGGTTGAGAATGTGGTAGACCCGGCCCATGTCCCTTTTGC
CCACCATGGGGTGCAAGCCCAACGGTCGATGGCCATGCCTTTGAATGTCA
GCTTAAATCACGTTGGGCGGGAAGGCGTATTTTTGTCCCTCCCCCGGCTG
GCCAACAGCACGATTGAGTTCCATGCCCCGACGCGGCTGCATTACCAGTT
TGATTTCTCCGGCTTCTTCGCACGGATCCCTTTCATGAAGTGGTCGTGGG
CGATTGAAAAGAAGCTGCGAAGGCTGCCACCTGACACTCCTCCCCGGTCA
TCCCTCGTCTCGTACACCATTCCGGTCGGCCCCGGGAGGAGTCGAATTCT
GGCGCTCTTTCCCCGAAATTTCTTCGCGATGAACAAGCCAAGGTGGATGG
ATCACTTGGAGAGGAATGCGGTACTGGACGGGGATTTGGTGTTTTTGCAC
GGTCAAGAACGCGAAATGCGACGGCCGGAATTGAAGTGGGAGGAGAACAT
CGACCGGGCGTTTTATATGCCGACTAAAAGCGATGAGGGCGTGCGGGCTT
TCAGGCAGTGGATTGTCAAGTGGGGAGGGGGAGGGCCTAGGTGGGCGGAG
GGTGTGGATCCCTCCCTACCTCCCCGGAGTGTGGATAGAGAGTTTTTGAT
GGATCGGTACAATCAACACACGAAGCAGTGCTCGGCGTGCAAAGGCGCTT
TGCAGAACATTCGGATTTTGAAAGGAGTGATGACTGTAGGGGCCCTGGTG
TGCGCAACGGCCGTGTGGACCCCGCGTCCCGCGAAGATGCTCGCGAAGAT
TTTGGGGGCGGGTCTGGCCCAGCTGATGGTGGCCTGGCAGTGTGTTAGGC
TAGAGAAGCGGATGGTGTTTATTGATTATATTCATGCCGAGAAATAGATG
CCGCGTCCTGCGCTCCTCCTTCTCATAAGTCTCGCCCTGACAAGCACCAT
CACAACCACCGCCTTCTCTACCCCCCGCGTCAGCCCGCTCTTCCGTAGTC
TCTTCCCCTCTCAAGGGAAGACACCTACCACGACCCCTCCCAAGGCGGTC
GGACCCTTTGCGACCATCGAGCAACCTGCCCCCATCACCACCTCCGCACC
AGTAGCAGCAAGCGTGCCGTCCACCTCCACGTCGCTGCAGCCCTTTGGTG
GTGCTCAAGGGAGCGGTGCTCCGATCGACTGGTGGCGGCAATGGTACCCT
ATGGCCTTCCTGGACGACCTGGACCCGAAACGTCCCACGCAAGTCGAACT
TCTTGGCAAGCTCTTCGTTATTTGGGCCGACCACGACAAAACCTGGCATG
CATTTGAAGACCAGTGCCCTCATCGTCTCGCCCCCCTCTCCGAAGGGCGG
ATCGATGAGCGTGGGAACCTGCAATGCGCCTATCACGGTTGGTCTTTCTC
CGGACAGGGTGGTAACGTCAACATCCCCCAAGCCGAACCTGAGATCAAAG
CAGTCGCTGAACGCTCGAGCCGCGCCTGCGCGAAAGTTGTTCCCCTCATG
GTCGCTCAGGGTATGGCGTGGCTGTGGCCTGACAATAGTCTGGAAGGGAT
GGAAGCGTCTCGAGGGGTGTTGCCCAGCACGGTGCCCGAATTGAACGACC
CGAGTTTCATCAAGGGGGCGTGGGTGACGAGAGATTTGATGTATGGCTAC
GATACGTTGGTTGAGAATGTGGTAGACCCGGCCCATGTCCCTTTTGCCCA
CCATGGGGTGCAAGCCCAACGGTCGATGGCCATGCCTTTGAATGTCAGCT
TAAATCACGTTGGGCGGGAAGGCGTATTTTTGTCCCTCCCCCGGCTGGCC
AACAGCACGATTGAGTTCCATGCCCCGACGCGGCTGCATTACCAGTTTGA
TTTCTCCGGCTTCTTCGCACGGATCCCTTTCATGAAGTGGTCGTGGGCGA
TTGAAAAGAAGCTGCGAAGGCTGCCACCTGACACTCCTCCCCGGTCATCC
CTCGTCTCGTACACCATTCCGGTCGGCCCCGGGAGGAGTCGAATTCTGGC
GCTCTTTCCCCGAAATTTCTTCGCGATGAACAAGCCAAGGTGGATGGATC
ACTTGGAGAGGAATGCGGTACTGGACGGGGATTTGGTGTTTTTGCACGGT
CAAGAACGCGAAATGCGACGGCCGGAATTGAAGTGGGAGGAGAACATCGA
CCGGGCGTTTTATATGCCGACTAAAAGCGATGAGGGCGTGCGGGCTTTCA
GGCAGTGGATTGTCAAGTGGGGAGGGGGAGGGCCTAGGTGGGCGGAGGGT
GTGGATCCCTCCCTACCTCCCCGGAGTGTGGATAGAGAGTTTTTGATGGA
TCGGTACAATCAACACACGAAGCAGTGCTCGGCGTGCAAAGGCGCTTTGC
AGAACATTCGGATTTTGAAAGGAGTGATGACTGTAGGGGCCCTGGTGTGC
GCAACGGCCGTGTGGACCCCGCGTCCCGCGAAGATGCTCGCGAAGATTTT
GGGGGCGGGTCTGGCCCAGCTGATGGTGGCCTGGCAGTGTGTTAGGCTAG
AGAAGCGGATGGTGTTTATTGATTATATTCATGCCGAGAAATAG back to top
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