jgi.p|Nanoce1779_2|30797, mRNA_11617 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|30797
Unique NamemRNA_11617
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length673
Alignment locationscaffold_108:30284..30956 +

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Properties
Property NameValue
TranscriptId30883
TrackFilteredModels2
ProteinId30797
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:30284..30956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|30797gene_11617Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|30797mRNA_11617-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11617CDS_11617Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11617 ID=mRNA_11617|Name=jgi.p|Nanoce1779_2|30797|organism=Nannochloropsis oceanica|type=mRNA|length=673bp
ATCAATCTCGACTAAGCTGTTCCAGGCGCACGCTTGCGCGTTGCTCTTTT
CGCCTCTTCCTACGATGATATGATGTGATGTGGGGGTGCATAGTAGCGGT
TAGAGTTAGTGTCAAGTGTAAAGCGAGAGAGAGGTCACGTATAAAGCGAG
GGATAGGTAGCTAGGCTGCGAAATGTGCATATTTGCTATAGCGACTGCGT
TTGATGCTGCTGCGGCTGCGGCGGCGGAGGCGGCAAAGTGGTATGAGTTC
CCCTTGTGGACATGTCATGACCGGGGACGTAATTCAAGCAGACAGCATTC
TTTTCAAGAATTGCAGTCAACCAGCCTTGCCCACCAAGCAGCCAGTAAAC
CCTGGATGTCACCACACAAGCTTCATCACCCGCGCCCTGTGTGTATCAGT
GTAATCTATGCCATGCTTGAGTGTCGTTGGGGACTTATTGCTCCCTGTCT
GAGTGAACTCGCCGCCGCCGACGACATCGCTCTTACCCCAACTGATCCCC
GGTATCATTTTCCTTGGGAGAGCTTGTGTGGGCATGCTTTCATTTGTACA
TGGCAAGAAGCTTTTGGATGATAGGGTGGGCAAGTCACATGAAAACAGGC
GTTTGTTTATTAATCAAAGTACCTTTCCCCCCTAACAACCTCCCCTCACA
ACATCACACAGGGTACAGAGCAG
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protein sequence of jgi.p|Nanoce1779_2|30797

>mRNA_11617-protein ID=mRNA_11617-protein|Name=jgi.p|Nanoce1779_2|30797|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MCIFAIATAFDAAAAAAAEAAKWYEFPLWTCHDRGRNSSRQHSFQELQST
SLAHQAASKPWMSPHKLHHPRPVCISVIYAMLECRWGLIAPCLSELAAAD
DIALTPTDPRYHFPWESLCGHAFICTWQEAFG*
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mRNA from alignment at scaffold_108:30284..30956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11617 ID=mRNA_11617|Name=jgi.p|Nanoce1779_2|30797|organism=Nannochloropsis oceanica|type=mRNA|length=673bp|location=Sequence derived from alignment at scaffold_108:30284..30956+ (Nannochloropsis oceanica)
ATCAATCTCGACTAAGCTGTTCCAGGCGCACGCTTGCGCGTTGCTCTTTT
CGCCTCTTCCTACGATGATATGATGTGATGTGGGGGTGCATAGTAGCGGT
TAGAGTTAGTGTCAAGTGTAAAGCGAGAGAGAGGTCACGTATAAAGCGAG
GGATAGGTAGCTAGGCTGCGAAATGTGCATATTTGCTATAGCGACTGCGT
TTGATGCTGCTGCGGCTGCGGCGGCGGAGGCGGCAAAGTGGTATGAGTTC
CCCTTGTGGACATGTCATGACCGGGGACGTAATTCAAGCAGACAGCATTC
TTTTCAAGAATTGCAGTCAACCAGCCTTGCCCACCAAGCAGCCAGTAAAC
CCTGGATGTCACCACACAAGCTTCATCACCCGCGCCCTGTGTGTATCAGT
GTAATCTATGCCATGCTTGAGTGTCGTTGGGGACTTATTGCTCCCTGTCT
GAGTGAACTCGCCGCCGCCGACGACATCGCTCTTACCCCAACTGATCCCC
GGTATCATTTTCCTTGGGAGAGCTTGTGTGGGCATGCTTTCATTTGTACA
TGGCAAGAAGCTTTTGGATGATAGGGTGGGCAAGTCACATGAAAACAGGC
GTTTGTTTATTAATCAAAGTACCTTTCCCCCCTAACAACCTCCCCTCACA
ACATCACACAGGGTACAGAGCAG
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Coding sequence (CDS) from alignment at scaffold_108:30284..30956+

>mRNA_11617 ID=mRNA_11617|Name=jgi.p|Nanoce1779_2|30797|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_108:30284..30956+ (Nannochloropsis oceanica)
ATGTGCATATTTGCTATAGCGACTGCGTTTGATGCTGCTGCGGCTGCGGC
GGCGGAGGCGGCAAAGTGGTATGAGTTCCCCTTGTGGACATGTCATGACC
GGGGACGTAATTCAAGCAGACAGCATTCTTTTCAAGAATTGCAGTCAACC
AGCCTTGCCCACCAAGCAGCCAGTAAACCCTGGATGTCACCACACAAGCT
TCATCACCCGCGCCCTGTGTGTATCAGTGTAATCTATGCCATGCTTGAGT
GTCGTTGGGGACTTATTGCTCCCTGTCTGAGTGAACTCGCCGCCGCCGAC
GACATCGCTCTTACCCCAACTGATCCCCGGTATCATTTTCCTTGGGAGAG
CTTGTGTGGGCATGCTTTCATTTGTACATGGCAAGAAGCTTTTGGATGA
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Synonyms
Publications