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Properties
| Property Name | Value |
|---|
| TranscriptId | 675535 |
| Track | FilteredModels2 |
| ProteinId | 675449 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:30941..32188 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11618 ID=mRNA_11618|Name=jgi.p|Nanoce1779_2|675449|organism=Nannochloropsis oceanica|type=mRNA|length=534bp
ACAGGGTACAGAGCAGCACAGAGCATGGCATTCAAGCGATACGTCGCCAT
CGTGGGCAAGCAGCGGTGGGGGGGGGGCGCTGCTCAATCAGGCAGCGATG
TCTACGGGCTCCTAGTCGCCTTAAAACGGGAGCTCGCGCAGTGTGAGGTC
GGGCTAGCCATGGTTCAGCGGATAGATGGTCTCATCAGCATCAGCAGTGA
CCCGGACGCTGTAAACCAATATACCTTCCTCGCAGCAGCAAAGACACAGA
TCCCTGTTGTAGGTACTGGAGGCACGTCTTTGGGCAAGGCTGCGGGTGAA
TTGGACTGTAATGTGGTCGGAAACAGTGTCATAACAGCATCGCAGGTGGC
TCAAATGGGAGAGACTGCCGCTTTGGCTGGGGTGGTGGCTGGGGTGCTTG
CCTGTAGTGGCAGCGGCGGGAGCCGGAGCAGCAGCAGCGAAGAAGCAGAT
GGCACGGTGCTGGGGGGAATTATGACTGGATGGTTGGCGGGGGCTGGGGC
AACGGGCCTGATCGCGGCTTTGGTAGAAGGTTAA back to topprotein sequence of jgi.p|Nanoce1779_2|675449 >mRNA_11618-protein ID=mRNA_11618-protein|Name=jgi.p|Nanoce1779_2|675449|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MAFKRYVAIVGKQRWGGGAAQSGSDVYGLLVALKRELAQCEVGLAMVQRI
DGLISISSDPDAVNQYTFLAAAKTQIPVVGTGGTSLGKAAGELDCNVVGN
SVITASQVAQMGETAALAGVVAGVLACSGSGGSRSSSSEEADGTVLGGIM
TGWLAGAGATGLIAALVEG* back to topmRNA from alignment at scaffold_108:30941..32188+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11618 ID=mRNA_11618|Name=jgi.p|Nanoce1779_2|675449|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at scaffold_108:30941..32188+ (Nannochloropsis oceanica)
ACAGGGTACAGAGCAGCACAGAGCATGGCATTCAAGCGATACGTCGCCAT
CGTGGGCAAGCAGCGGTGGGGGGGGGGCGCTGCTCAATCAGGCAGCGATG
TCTACGGGCTCCTAGTCGCCTTAAAACGGGAGCTCGCGCAGTGTGAGGTC
GGGCTAGCCATGGTTCAGGTTCGTTTTGGGGTGGTGTGGATGTGCTAGAC
GGGACGGGAGGAGGGAAATATCTGCCACTACGAACTGTAGGCGGGACCAA
CAGCTTCCCCAATCGAACCGAGTCTAGAACATGCTTCTCTTATGCTCGAA
TTTATACCAATCTCCTGTCTATCCGTCTCCTCACATAGCTCGTTGAATGC
AGCGCCCCGCTCGACTTTGCCGCCTCGCAAACCCCCCACCGTCCTCTGGA
CGGTCAACCCACAAACCGAACAAATAGAGCGTTCCTTTAACGGTACCCTA
GACGGAGTGAATGAACGTGCACAATTGTCGATCGCCTCATATCCCGCATG
ATAATTGGTGACGAAAAACAGCGGATAGATGGTCTCATCAGCATCAGCAG
TGACCCGGACGCTGTAAACCAATATACCTTCCTCGCAGCAGCAAAGACAC
AGATCCCTGTTGTAGGTACTGGAGGCACGTCTTTGGGCAAGGCTGCGGGT
GAATTGGACTGTAATGTGGTCGGAAACAGTGGTGGGTCAGTCTCGACAAC
AATAGAGACAAAGGCCTTGAGTTTTACGGCTAGTCTTGCCGGATTTGGAA
ATTGACTTACGAACCTTCAGTACCAAGGCCGCGTTTGAATGGGATTTTGG
GAGCATGTTTGCCAGCGTTTGTGGCAGTGGCAATTGCGAATAAACTGTTG
AGAGATTTGCAGGGAGCTCGTTTTCTTGAATTGGTGGACAAGTAGTAGTG
GTGGTGGTGCAGTTGGAGGTCCGCCGTTGGATGTTTCTGGAGTCTGCCGG
TGCTTGCTTCAGTCATAACAGCATCGCAGGTGGCTCAAATGGGAGAGACT
GCCGCTTTGGCTGGGGTGGTGGCTGGGGTGCTTGCCTGTAGTGGCAGCGG
CGGGAGCCGGAGCAGCAGCAGCGAAGAAGCAGATGGCACGGTGCTGGGGG
GAATTATGACTGGATGGTTGGCGGGGGGTGGGTTATGTCGGTGGTTTTTG
GTTAAGACGGCAAGATCGTTGTGGGTGCCGGCGACTGCCGTCTTCCATCA
TACACAGCTGGGGCAACGGGCCTGATCGCGGCTTTGGTAGAAGGTTAA back to topCoding sequence (CDS) from alignment at scaffold_108:30941..32188+ >mRNA_11618 ID=mRNA_11618|Name=jgi.p|Nanoce1779_2|675449|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_108:30941..32188+ (Nannochloropsis oceanica)
ATGGCATTCAAGCGATACGTCGCCATCGTGGGCAAGCAGCGGTGGGGGGG
GGGCGCTGCTCAATCAGGCAGCGATGTCTACGGGCTCCTAGTCGCCTTAA
AACGGGAGCTCGCGCAGTGTGAGGTCGGGCTAGCCATGGTTCAGCGGATA
GATGGTCTCATCAGCATCAGCAGTGACCCGGACGCTGTAAACCAATATAC
CTTCCTCGCAGCAGCAAAGACACAGATCCCTGTTGTAGGTACTGGAGGCA
CGTCTTTGGGCAAGGCTGCGGGTGAATTGGACTGTAATGTGGTCGGAAAC
AGTGTCATAACAGCATCGCAGGTGGCTCAAATGGGAGAGACTGCCGCTTT
GGCTGGGGTGGTGGCTGGGGTGCTTGCCTGTAGTGGCAGCGGCGGGAGCC
GGAGCAGCAGCAGCGAAGAAGCAGATGGCACGGTGCTGGGGGGAATTATG
ACTGGATGGTTGGCGGGGGCTGGGGCAACGGGCCTGATCGCGGCTTTGGT
AGAAGGTTAAATGGCATTCAAGCGATACGTCGCCATCGTGGGCAAGCAGC
GGTGGGGGGGGGGCGCTGCTCAATCAGGCAGCGATGTCTACGGGCTCCTA
GTCGCCTTAAAACGGGAGCTCGCGCAGTGTGAGGTCGGGCTAGCCATGGT
TCAGCGGATAGATGGTCTCATCAGCATCAGCAGTGACCCGGACGCTGTAA
ACCAATATACCTTCCTCGCAGCAGCAAAGACACAGATCCCTGTTGTAGGT
ACTGGAGGCACGTCTTTGGGCAAGGCTGCGGGTGAATTGGACTGTAATGT
GGTCGGAAACAGTGTCATAACAGCATCGCAGGTGGCTCAAATGGGAGAGA
CTGCCGCTTTGGCTGGGGTGGTGGCTGGGGTGCTTGCCTGTAGTGGCAGC
GGCGGGAGCCGGAGCAGCAGCAGCGAAGAAGCAGATGGCACGGTGCTGGG
GGGAATTATGACTGGATGGTTGGCGGGGGCTGGGGCAACGGGCCTGATCG
CGGCTTTGGTAGAAGGTTAAATGGCATTCAAGCGATACGTCGCCATCGTG
GGCAAGCAGCGGTGGGGGGGGGGCGCTGCTCAATCAGGCAGCGATGTCTA
CGGGCTCCTAGTCGCCTTAAAACGGGAGCTCGCGCAGTGTGAGGTCGGGC
TAGCCATGGTTCAGCGGATAGATGGTCTCATCAGCATCAGCAGTGACCCG
GACGCTGTAAACCAATATACCTTCCTCGCAGCAGCAAAGACACAGATCCC
TGTTGTAGGTACTGGAGGCACGTCTTTGGGCAAGGCTGCGGGTGAATTGG
ACTGTAATGTGGTCGGAAACAGTGTCATAACAGCATCGCAGGTGGCTCAA
ATGGGAGAGACTGCCGCTTTGGCTGGGGTGGTGGCTGGGGTGCTTGCCTG
TAGTGGCAGCGGCGGGAGCCGGAGCAGCAGCAGCGAAGAAGCAGATGGCA
CGGTGCTGGGGGGAATTATGACTGGATGGTTGGCGGGGGCTGGGGCAACG
GGCCTGATCGCGGCTTTGGTAGAAGGTTAAATGGCATTCAAGCGATACGT
CGCCATCGTGGGCAAGCAGCGGTGGGGGGGGGGCGCTGCTCAATCAGGCA
GCGATGTCTACGGGCTCCTAGTCGCCTTAAAACGGGAGCTCGCGCAGTGT
GAGGTCGGGCTAGCCATGGTTCAGCGGATAGATGGTCTCATCAGCATCAG
CAGTGACCCGGACGCTGTAAACCAATATACCTTCCTCGCAGCAGCAAAGA
CACAGATCCCTGTTGTAGGTACTGGAGGCACGTCTTTGGGCAAGGCTGCG
GGTGAATTGGACTGTAATGTGGTCGGAAACAGTGTCATAACAGCATCGCA
GGTGGCTCAAATGGGAGAGACTGCCGCTTTGGCTGGGGTGGTGGCTGGGG
TGCTTGCCTGTAGTGGCAGCGGCGGGAGCCGGAGCAGCAGCAGCGAAGAA
GCAGATGGCACGGTGCTGGGGGGAATTATGACTGGATGGTTGGCGGGGGC
TGGGGCAACGGGCCTGATCGCGGCTTTGGTAGAAGGTTAA back to top
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