jgi.p|Nanoce1779_2|615861, mRNA_11622 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615861
Unique NamemRNA_11622
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2432
Alignment locationscaffold_108:38242..40673 -

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Properties
Property NameValue
TranscriptId615947
TrackFilteredModels2
ProteinId615861
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:38242..40673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615861gene_11622Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615861mRNA_11622-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11622CDS_11622Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11622 ID=mRNA_11622|Name=jgi.p|Nanoce1779_2|615861|organism=Nannochloropsis oceanica|type=mRNA|length=2432bp
ACAGGGACAGGCAGCGTTCAGAGTCAAGAGCGTCTTTCCAAGGGTCTTGT
AGCAAACGAGCGAGCCAGACAGATTCCAGCCTAGCCAGCTTCGTACGTAC
ACACTTCGTAGCGAGTGAAACAAGCGGTCTTTTACGATGGCACCTCCGAC
AAGCATGCTGGGTCTCTTGGCCGCAACCACTGCCTTGTGTGCAAGCACCA
CCTCAGCCTTCGTAATGCCCGTCCGCCCCTTGACTCTGGCTGCCCGCCCC
AGCAGCCTCACGTCGAGCAGCAGCAGCAGGAGTTGTGTTGGGATTCCTTT
GCGTATGGTCTCACATCCGGACGTTGACAACGAATACAAGCGCAAGCTCT
CGGAGCAACGAAGATGGACGAAGAGCACAAAGCAGTTGGCAACCCTAGGG
CCCGTCTCCAACACAGAGGAGATGATAGAGAAACTGTTCCTTGCCGGCGT
AGATGTGTTCCGTCTCAACTTTTCCCATGGCGCGCACGAAGAAAAAAAGG
CGTTGTTGGACATTATTCGAGGGCTTGAAGTGAAGTTCAATCACCCAATT
GCCATTTTAGCGGATTTACAGGGGCCAAAGCTTCGCGTAGGGACGTTTGA
GCATGATAAGGTGATCTTGGTGGACGGACAGTCGTTTCGATTTGACCTGA
GCGATGAGCCAGGGGATTCGATGAGGGTCAATTTGCCCCATCCCGAGATT
ATTAATACCTTGCAAAACGGGGACACGCTTTTGTTGGATGACGGGAAGCT
GCGGATGACTGTTACGAAAAAGGGGGAGGGTTTTGTGGACACACTGGTGA
ATGTCGGAGGGGCCCTGTCGAACAGGAAGGGGGTGAACACCCCTTCGGTT
GTCTTGCCCATCTCGGCATTGACGCCCAAGGATCGGAAAGATCTGGATTT
TGCGTTGTCGATTGGCGTGGACTGGGTGGCACTTTCGTTCGTGCAGCAGC
CGCAGGACATTGCGGAGCTTCGGACGCTCGTGGGGAATAAGGCGAAGATC
ATGGCGAAATTGGAGAAGCCCTCCGCCGTCCAGGAAGGAGTGGTCGACGA
TATAATTATGCTATCGGACGGAATTATGGTTGCGCGTGGAGATCTCGGGG
TGGAGATGCGACCGGAAGACGTGCCTGTCATCCAGAAGCAGATCATTGAG
AAATGCCGAAAGTACGGCAGGCCCGTCGTGGTGGCCACTCAGATGCTCGA
GAGCATGATTGAATCTCCCACTCCAACCCGTGCGGAAGCCTCTGACGTGG
CTACTGCCATCTATGACGGTGCAGACGCGATCATGTTGAGCGCGGAATCG
GCCGCGGGCAAGTTCCCTGTGGAATCGGTGATGATGCAGCAGAGGGTCAT
TCTGCGCGTGGAAGAAGATAAGGCTTACCGTAAGAACCTTGCGCGATCCA
ATCCCCAACGTTTGGAGAAATCGGCAACCGATGCCATCACCAACGCGGCG
CGGGAAATCGCTGCCACCATTGGGGCGTGTGCTCTGGTCGTGTTCACAGC
ACGAGGGACCACGGTGTTGCGTGCTTCAATGGGTCGGCCAGGCGTGCCGA
TCTTGGCGATTACCCCTGAAATTGAGACGGCGCGTGCCTTGGCCTTGACT
TGGGGGGTGTATCCTGCGGCGGTTGAAACGAGGGCAGAGCACGAGACCTT
TCCGGATGTGTTGAGGAAGATTTGTAGCGTGGCGACGGACAAGGGACTGG
CGAACCGTCCGGATGACCTTTTGGTGGTCACGGCGGGGTTGCCTTTTGGC
TCTCCTGGCGTGGCAAATGTAATTAGGGTGGTGCCTGCGTCCGGGCCGGA
GGATTGGGTGGTGGGTGGAGATAAGAACTTGAACACGATTTAAGCTTGAG
GAGGGAGAGGGAGGGGAGGGGTCCTCCATGTTCAATAATTATGTCTCTGT
GTGCTGAGTGTTCTCTTTGTTTCTTGGTGTTTTAGACTCGTGTTGTTTTG
TTCAAGTGTGATTGGTTGTAAGCGTGGTATCGATTTGTGTTTTCGTGGGC
TGAGTGAGATTCGTCGAAGGGTGGAAAAAGACAACAAGAAATGTGGGAAT
GCAAGAAAGCGTGTCACGGGTTAAGTAAATGGATTTAAGTGAAAGGTTTG
AAAGTGGAATGAAAATCATTTTGCGTCCATCTGTCTGCATGTCTTTGCGC
CACACGTAACGTGTGTACATGGTATTCAAAAATCGTGTTTGGTGCACATT
GTGGTAGAAGGTAGGTTTGCTCCTGGACACATGCTTTAAGTAAGTAAGTA
GTTTGTTTTTAATCAGTTGCATGTTTTTTGAGATGCCTGCATTAGTTTTT
CCAGGGCTAGGATGAAGACAATGACGACGTCGGCGTTTATATAGCTGTGG
GTGCTGCTACTGCTGTTTTGCATTAGATGCCGCCGTTAACGTTGAATTAA
TTTCTGATAACGGCTCAGTGTAAGGTTAGAGG
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protein sequence of jgi.p|Nanoce1779_2|615861

>mRNA_11622-protein ID=mRNA_11622-protein|Name=jgi.p|Nanoce1779_2|615861|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MAPPTSMLGLLAATTALCASTTSAFVMPVRPLTLAARPSSLTSSSSSRSC
VGIPLRMVSHPDVDNEYKRKLSEQRRWTKSTKQLATLGPVSNTEEMIEKL
FLAGVDVFRLNFSHGAHEEKKALLDIIRGLEVKFNHPIAILADLQGPKLR
VGTFEHDKVILVDGQSFRFDLSDEPGDSMRVNLPHPEIINTLQNGDTLLL
DDGKLRMTVTKKGEGFVDTLVNVGGALSNRKGVNTPSVVLPISALTPKDR
KDLDFALSIGVDWVALSFVQQPQDIAELRTLVGNKAKIMAKLEKPSAVQE
GVVDDIIMLSDGIMVARGDLGVEMRPEDVPVIQKQIIEKCRKYGRPVVVA
TQMLESMIESPTPTRAEASDVATAIYDGADAIMLSAESAAGKFPVESVMM
QQRVILRVEEDKAYRKNLARSNPQRLEKSATDAITNAAREIAATIGACAL
VVFTARGTTVLRASMGRPGVPILAITPEIETARALALTWGVYPAAVETRA
EHETFPDVLRKICSVATDKGLANRPDDLLVVTAGLPFGSPGVANVIRVVP
ASGPEDWVVGGDKNLNTI*
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mRNA from alignment at scaffold_108:38242..40673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11622 ID=mRNA_11622|Name=jgi.p|Nanoce1779_2|615861|organism=Nannochloropsis oceanica|type=mRNA|length=2432bp|location=Sequence derived from alignment at scaffold_108:38242..40673- (Nannochloropsis oceanica)
ACAGGGACAGGCAGCGTTCAGAGTCAAGAGCGTCTTTCCAAGGGTCTTGT
AGCAAACGAGCGAGCCAGACAGATTCCAGCCTAGCCAGCTTCGTACGTAC
ACACTTCGTAGCGAGTGAAACAAGCGGTCTTTTACGATGGCACCTCCGAC
AAGCATGCTGGGTCTCTTGGCCGCAACCACTGCCTTGTGTGCAAGCACCA
CCTCAGCCTTCGTAATGCCCGTCCGCCCCTTGACTCTGGCTGCCCGCCCC
AGCAGCCTCACGTCGAGCAGCAGCAGCAGGAGTTGTGTTGGGATTCCTTT
GCGTATGGTCTCACATCCGGACGTTGACAACGAATACAAGCGCAAGCTCT
CGGAGCAACGAAGATGGACGAAGAGCACAAAGCAGTTGGCAACCCTAGGG
CCCGTCTCCAACACAGAGGAGATGATAGAGAAACTGTTCCTTGCCGGCGT
AGATGTGTTCCGTCTCAACTTTTCCCATGGCGCGCACGAAGAAAAAAAGG
CGTTGTTGGACATTATTCGAGGGCTTGAAGTGAAGTTCAATCACCCAATT
GCCATTTTAGCGGATTTACAGGGGCCAAAGCTTCGCGTAGGGACGTTTGA
GCATGATAAGGTGATCTTGGTGGACGGACAGTCGTTTCGATTTGACCTGA
GCGATGAGCCAGGGGATTCGATGAGGGTCAATTTGCCCCATCCCGAGATT
ATTAATACCTTGCAAAACGGGGACACGCTTTTGTTGGATGACGGGAAGCT
GCGGATGACTGTTACGAAAAAGGGGGAGGGTTTTGTGGACACACTGGTGA
ATGTCGGAGGGGCCCTGTCGAACAGGAAGGGGGTGAACACCCCTTCGGTT
GTCTTGCCCATCTCGGCATTGACGCCCAAGGATCGGAAAGATCTGGATTT
TGCGTTGTCGATTGGCGTGGACTGGGTGGCACTTTCGTTCGTGCAGCAGC
CGCAGGACATTGCGGAGCTTCGGACGCTCGTGGGGAATAAGGCGAAGATC
ATGGCGAAATTGGAGAAGCCCTCCGCCGTCCAGGAAGGAGTGGTCGACGA
TATAATTATGCTATCGGACGGAATTATGGTTGCGCGTGGAGATCTCGGGG
TGGAGATGCGACCGGAAGACGTGCCTGTCATCCAGAAGCAGATCATTGAG
AAATGCCGAAAGTACGGCAGGCCCGTCGTGGTGGCCACTCAGATGCTCGA
GAGCATGATTGAATCTCCCACTCCAACCCGTGCGGAAGCCTCTGACGTGG
CTACTGCCATCTATGACGGTGCAGACGCGATCATGTTGAGCGCGGAATCG
GCCGCGGGCAAGTTCCCTGTGGAATCGGTGATGATGCAGCAGAGGGTCAT
TCTGCGCGTGGAAGAAGATAAGGCTTACCGTAAGAACCTTGCGCGATCCA
ATCCCCAACGTTTGGAGAAATCGGCAACCGATGCCATCACCAACGCGGCG
CGGGAAATCGCTGCCACCATTGGGGCGTGTGCTCTGGTCGTGTTCACAGC
ACGAGGGACCACGGTGTTGCGTGCTTCAATGGGTCGGCCAGGCGTGCCGA
TCTTGGCGATTACCCCTGAAATTGAGACGGCGCGTGCCTTGGCCTTGACT
TGGGGGGTGTATCCTGCGGCGGTTGAAACGAGGGCAGAGCACGAGACCTT
TCCGGATGTGTTGAGGAAGATTTGTAGCGTGGCGACGGACAAGGGACTGG
CGAACCGTCCGGATGACCTTTTGGTGGTCACGGCGGGGTTGCCTTTTGGC
TCTCCTGGCGTGGCAAATGTAATTAGGGTGGTGCCTGCGTCCGGGCCGGA
GGATTGGGTGGTGGGTGGAGATAAGAACTTGAACACGATTTAAGCTTGAG
GAGGGAGAGGGAGGGGAGGGGTCCTCCATGTTCAATAATTATGTCTCTGT
GTGCTGAGTGTTCTCTTTGTTTCTTGGTGTTTTAGACTCGTGTTGTTTTG
TTCAAGTGTGATTGGTTGTAAGCGTGGTATCGATTTGTGTTTTCGTGGGC
TGAGTGAGATTCGTCGAAGGGTGGAAAAAGACAACAAGAAATGTGGGAAT
GCAAGAAAGCGTGTCACGGGTTAAGTAAATGGATTTAAGTGAAAGGTTTG
AAAGTGGAATGAAAATCATTTTGCGTCCATCTGTCTGCATGTCTTTGCGC
CACACGTAACGTGTGTACATGGTATTCAAAAATCGTGTTTGGTGCACATT
GTGGTAGAAGGTAGGTTTGCTCCTGGACACATGCTTTAAGTAAGTAAGTA
GTTTGTTTTTAATCAGTTGCATGTTTTTTGAGATGCCTGCATTAGTTTTT
CCAGGGCTAGGATGAAGACAATGACGACGTCGGCGTTTATATAGCTGTGG
GTGCTGCTACTGCTGTTTTGCATTAGATGCCGCCGTTAACGTTGAATTAA
TTTCTGATAACGGCTCAGTGTAAGGTTAGAGG
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Coding sequence (CDS) from alignment at scaffold_108:38242..40673-

>mRNA_11622 ID=mRNA_11622|Name=jgi.p|Nanoce1779_2|615861|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at scaffold_108:38242..40673- (Nannochloropsis oceanica)
ATGGCACCTCCGACAAGCATGCTGGGTCTCTTGGCCGCAACCACTGCCTT
GTGTGCAAGCACCACCTCAGCCTTCGTAATGCCCGTCCGCCCCTTGACTC
TGGCTGCCCGCCCCAGCAGCCTCACGTCGAGCAGCAGCAGCAGGAGTTGT
GTTGGGATTCCTTTGCGTATGGTCTCACATCCGGACGTTGACAACGAATA
CAAGCGCAAGCTCTCGGAGCAACGAAGATGGACGAAGAGCACAAAGCAGT
TGGCAACCCTAGGGCCCGTCTCCAACACAGAGGAGATGATAGAGAAACTG
TTCCTTGCCGGCGTAGATGTGTTCCGTCTCAACTTTTCCCATGGCGCGCA
CGAAGAAAAAAAGGCGTTGTTGGACATTATTCGAGGGCTTGAAGTGAAGT
TCAATCACCCAATTGCCATTTTAGCGGATTTACAGGGGCCAAAGCTTCGC
GTAGGGACGTTTGAGCATGATAAGGTGATCTTGGTGGACGGACAGTCGTT
TCGATTTGACCTGAGCGATGAGCCAGGGGATTCGATGAGGGTCAATTTGC
CCCATCCCGAGATTATTAATACCTTGCAAAACGGGGACACGCTTTTGTTG
GATGACGGGAAGCTGCGGATGACTGTTACGAAAAAGGGGGAGGGTTTTGT
GGACACACTGGTGAATGTCGGAGGGGCCCTGTCGAACAGGAAGGGGGTGA
ACACCCCTTCGGTTGTCTTGCCCATCTCGGCATTGACGCCCAAGGATCGG
AAAGATCTGGATTTTGCGTTGTCGATTGGCGTGGACTGGGTGGCACTTTC
GTTCGTGCAGCAGCCGCAGGACATTGCGGAGCTTCGGACGCTCGTGGGGA
ATAAGGCGAAGATCATGGCGAAATTGGAGAAGCCCTCCGCCGTCCAGGAA
GGAGTGGTCGACGATATAATTATGCTATCGGACGGAATTATGGTTGCGCG
TGGAGATCTCGGGGTGGAGATGCGACCGGAAGACGTGCCTGTCATCCAGA
AGCAGATCATTGAGAAATGCCGAAAGTACGGCAGGCCCGTCGTGGTGGCC
ACTCAGATGCTCGAGAGCATGATTGAATCTCCCACTCCAACCCGTGCGGA
AGCCTCTGACGTGGCTACTGCCATCTATGACGGTGCAGACGCGATCATGT
TGAGCGCGGAATCGGCCGCGGGCAAGTTCCCTGTGGAATCGGTGATGATG
CAGCAGAGGGTCATTCTGCGCGTGGAAGAAGATAAGGCTTACCGTAAGAA
CCTTGCGCGATCCAATCCCCAACGTTTGGAGAAATCGGCAACCGATGCCA
TCACCAACGCGGCGCGGGAAATCGCTGCCACCATTGGGGCGTGTGCTCTG
GTCGTGTTCACAGCACGAGGGACCACGGTGTTGCGTGCTTCAATGGGTCG
GCCAGGCGTGCCGATCTTGGCGATTACCCCTGAAATTGAGACGGCGCGTG
CCTTGGCCTTGACTTGGGGGGTGTATCCTGCGGCGGTTGAAACGAGGGCA
GAGCACGAGACCTTTCCGGATGTGTTGAGGAAGATTTGTAGCGTGGCGAC
GGACAAGGGACTGGCGAACCGTCCGGATGACCTTTTGGTGGTCACGGCGG
GGTTGCCTTTTGGCTCTCCTGGCGTGGCAAATGTAATTAGGGTGGTGCCT
GCGTCCGGGCCGGAGGATTGGGTGGTGGGTGGAGATAAGAACTTGAACAC
GATTTAA
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Synonyms
Publications