jgi.p|Nanoce1779_2|615836, mRNA_11611 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|615836
Unique Name	mRNA_11611
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1247
Alignment location	scaffold_108:12211..13457 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	615922
Track	FilteredModels2
ProteinId	615836

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_108	supercontig	scaffold_108:12211..13457 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615836	gene_11611	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|615836	mRNA_11611-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11611	CDS_11611	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_108:12211..13457+
coding sequence from alignment at scaffold_108:12211..13457+

mRNA sequence

>mRNA_11611 ID=mRNA_11611|Name=jgi.p|Nanoce1779_2|615836|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
CCCCCCTCCACCGCCTTCTCCTCCCCCTTCTGTGGTCGGTAGATACAATA
TCCTCGCCCACTCCACCAACGGCCTTATCAAATCTAACAGCTCCTGCCTC
GCCTCCGCCTCAGGCACTCTCAACCCGTACAACTGCACCCGGAAACGAGA
AATGACATGATCAGCCACTCGCTCCACTTCCTCTACTACCGACCCATCCG
CCAAGCGTTGCAGAAGCCGCTCCCTCTCATTCAGCAACAATAAGGTTGCT
TGAACAAAAGAATGCTTCAGATTGCCCATAGTCGTCACTGGGCTCTGCCC
CGAGGACGATGACATTGAAAATTGCAGAACCGCCCGCCGATCGCACTGCA
GCCCCGAAATAACCGACGAGGGACTCACCAGCAAATCTGGATGCAAAATC
AAATAGTTCTGCGTCCGATCCACCACCGTCAATAGCGCTCCCTTCTTCCC
TTCCACTACATCCTTCCCTTTTTCTGTACTCACAATATGCACAAGATCCC
CTTTCCGTGGCGGGCACTCCACGCTCCAGGGAGGGCCGATGGTGAGTTTC
ACTAGTTTCCCTGACTCGAGATGGACAGCTTCCGCCTGCTTATTTCCACC
CACGTCTTTAATTCCCTCAATTAAATAACGAGAGTAACCCCCCGCTTCCT
CCATACCCGAATAGACGTCCGCAGGAGAAGGCAAGGGAGGGTTGGAGGAC
ACGAGGGGAGGGAAGGGGAGAGGTGGGGCGGACTGAAGAGGCTTTGGAAC
TTCTTTGGAGGAGGATTGTTGTGTGCCTGCTGGTGATGCCGTCGACGGAG
GATTAGTTCGAATGTTGAAAATTGGAGCAACTGCTGGTGCCGGAGCTGCA
GCTGGTGTTTTCGTCGTCGCCGCCGCCGCCGCTGCTATTACTGCTGCTGC
TGCTGCTGGTGGTGCGGCTGGGGGTGCGGGAGGAGCGGGACGAAGAGAAG
GAGGAAGCTCATCTTGCTGCGTGAGTTGCAAGATTTGTGCCCAGTCATTC
TCTGTCCACAGGTTGGAATCGTCGGCTTCGTCCCATGGCTTGGCCTGCTC
TCCTTCAATCTCCTGCTGCTGCTGGTGCTGCTGCTCCTGTATCTCTAGTT
TTTCTCGTTTTTCCACACCGAAGCCACCTTCTTCCTCTTCCTGACTCAGC
TTCTCCTCAATCTGCTCCAAGATATGCAGAAAACGCTGACCCCCTCCTTC
TTCTCCCTCCCGTTCTACTCCTCCCCCTTCAAGACCCTGTCCCCTCC

protein sequence of jgi.p|Nanoce1779_2|615836

>mRNA_11611-protein ID=mRNA_11611-protein|Name=jgi.p|Nanoce1779_2|615836|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLKIGATAGAGAAAGVFVVAAAAAAITAAAAAGGAAGGAGGAGRREGGSS
SCCVSCKICAQSFSVHRLESSASSHGLACSPSISCCCWCCCSCISSFSRF
STPKPPSSSS*

mRNA from alignment at scaffold_108:12211..13457+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11611 ID=mRNA_11611|Name=jgi.p|Nanoce1779_2|615836|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp|location=Sequence derived from alignment at scaffold_108:12211..13457+ (Nannochloropsis oceanica)
CCCCCCTCCACCGCCTTCTCCTCCCCCTTCTGTGGTCGGTAGATACAATA
TCCTCGCCCACTCCACCAACGGCCTTATCAAATCTAACAGCTCCTGCCTC
GCCTCCGCCTCAGGCACTCTCAACCCGTACAACTGCACCCGGAAACGAGA
AATGACATGATCAGCCACTCGCTCCACTTCCTCTACTACCGACCCATCCG
CCAAGCGTTGCAGAAGCCGCTCCCTCTCATTCAGCAACAATAAGGTTGCT
TGAACAAAAGAATGCTTCAGATTGCCCATAGTCGTCACTGGGCTCTGCCC
CGAGGACGATGACATTGAAAATTGCAGAACCGCCCGCCGATCGCACTGCA
GCCCCGAAATAACCGACGAGGGACTCACCAGCAAATCTGGATGCAAAATC
AAATAGTTCTGCGTCCGATCCACCACCGTCAATAGCGCTCCCTTCTTCCC
TTCCACTACATCCTTCCCTTTTTCTGTACTCACAATATGCACAAGATCCC
CTTTCCGTGGCGGGCACTCCACGCTCCAGGGAGGGCCGATGGTGAGTTTC
ACTAGTTTCCCTGACTCGAGATGGACAGCTTCCGCCTGCTTATTTCCACC
CACGTCTTTAATTCCCTCAATTAAATAACGAGAGTAACCCCCCGCTTCCT
CCATACCCGAATAGACGTCCGCAGGAGAAGGCAAGGGAGGGTTGGAGGAC
ACGAGGGGAGGGAAGGGGAGAGGTGGGGCGGACTGAAGAGGCTTTGGAAC
TTCTTTGGAGGAGGATTGTTGTGTGCCTGCTGGTGATGCCGTCGACGGAG
GATTAGTTCGAATGTTGAAAATTGGAGCAACTGCTGGTGCCGGAGCTGCA
GCTGGTGTTTTCGTCGTCGCCGCCGCCGCCGCTGCTATTACTGCTGCTGC
TGCTGCTGGTGGTGCGGCTGGGGGTGCGGGAGGAGCGGGACGAAGAGAAG
GAGGAAGCTCATCTTGCTGCGTGAGTTGCAAGATTTGTGCCCAGTCATTC
TCTGTCCACAGGTTGGAATCGTCGGCTTCGTCCCATGGCTTGGCCTGCTC
TCCTTCAATCTCCTGCTGCTGCTGGTGCTGCTGCTCCTGTATCTCTAGTT
TTTCTCGTTTTTCCACACCGAAGCCACCTTCTTCCTCTTCCTGACTCAGC
TTCTCCTCAATCTGCTCCAAGATATGCAGAAAACGCTGACCCCCTCCTTC
TTCTCCCTCCCGTTCTACTCCTCCCCCTTCAAGACCCTGTCCCCTCC

Coding sequence (CDS) from alignment at scaffold_108:12211..13457+

>mRNA_11611 ID=mRNA_11611|Name=jgi.p|Nanoce1779_2|615836|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_108:12211..13457+ (Nannochloropsis oceanica)
ATGTTGAAAATTGGAGCAACTGCTGGTGCCGGAGCTGCAGCTGGTGTTTT
CGTCGTCGCCGCCGCCGCCGCTGCTATTACTGCTGCTGCTGCTGCTGGTG
GTGCGGCTGGGGGTGCGGGAGGAGCGGGACGAAGAGAAGGAGGAAGCTCA
TCTTGCTGCGTGAGTTGCAAGATTTGTGCCCAGTCATTCTCTGTCCACAG
GTTGGAATCGTCGGCTTCGTCCCATGGCTTGGCCTGCTCTCCTTCAATCT
CCTGCTGCTGCTGGTGCTGCTGCTCCTGTATCTCTAGTTTTTCTCGTTTT
TCCACACCGAAGCCACCTTCTTCCTCTTCCTGA

Synonyms

Publications