jgi.p|Nanoce1779_2|534530, mRNA_11619 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534530
Unique NamemRNA_11619
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length234
Alignment locationscaffold_108:32355..32588 +

Link to JBrowse

Properties
Property NameValue
TranscriptId534616
TrackFilteredModels2
ProteinId534530
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:32355..32588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534530gene_11619Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534530mRNA_11619-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11619CDS_11619Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11619 ID=mRNA_11619|Name=jgi.p|Nanoce1779_2|534530|organism=Nannochloropsis oceanica|type=mRNA|length=234bp
ATGACCTACGGGAGTCAAGTTGGGGGTTACCACCTCGTCTTCCTCCCCCT
CATCCTCTTCGAGATGGAAAAAGGACAGCCCTCCTTCCTCGGTGCGGTGG
ACTGGTGTTCACTTTGTTTGATCTCGGGAGGAATAACGACTGCGACGTGG
CTGTTGCCTCTGCCGACGTCTCATCCTAGCAACGGAGGAGGGGACCCACG
GCCATTGGCAAGAGGGGGGCGTACACAAACTTAA
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protein sequence of jgi.p|Nanoce1779_2|534530

>mRNA_11619-protein ID=mRNA_11619-protein|Name=jgi.p|Nanoce1779_2|534530|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MTYGSQVGGYHLVFLPLILFEMEKGQPSFLGAVDWCSLCLISGGITTATW
LLPLPTSHPSNGGGDPRPLARGGRTQT*
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mRNA from alignment at scaffold_108:32355..32588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11619 ID=mRNA_11619|Name=jgi.p|Nanoce1779_2|534530|organism=Nannochloropsis oceanica|type=mRNA|length=234bp|location=Sequence derived from alignment at scaffold_108:32355..32588+ (Nannochloropsis oceanica)
ATGACCTACGGGAGTCAAGTTGGGGGTTACCACCTCGTCTTCCTCCCCCT
CATCCTCTTCGAGATGGAAAAAGGACAGCCCTCCTTCCTCGGTGCGGTGG
ACTGGTGTTCACTTTGTTTGATCTCGGGAGGAATAACGACTGCGACGTGG
CTGTTGCCTCTGCCGACGTCTCATCCTAGCAACGGAGGAGGGGACCCACG
GCCATTGGCAAGAGGGGGGCGTACACAAACTTAA
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Coding sequence (CDS) from alignment at scaffold_108:32355..32588+

>mRNA_11619 ID=mRNA_11619|Name=jgi.p|Nanoce1779_2|534530|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_108:32355..32588+ (Nannochloropsis oceanica)
ATGACCTACGGGAGTCAAGTTGGGGGTTACCACCTCGTCTTCCTCCCCCT
CATCCTCTTCGAGATGGAAAAAGGACAGCCCTCCTTCCTCGGTGCGGTGG
ACTGGTGTTCACTTTGTTTGATCTCGGGAGGAATAACGACTGCGACGTGG
CTGTTGCCTCTGCCGACGTCTCATCCTAGCAACGGAGGAGGGGACCCACG
GCCATTGGCAAGAGGGGGGCGTACACAAACTTAA
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Synonyms
Publications