jgi.p|Nanoce1779_2|615852, mRNA_11616 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615852
Unique NamemRNA_11616
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length954
Alignment locationscaffold_108:25272..26225 +

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Properties
Property NameValue
TranscriptId615938
TrackFilteredModels2
ProteinId615852
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:25272..26225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615852gene_11616Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615852mRNA_11616-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11616CDS_11616Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11616 ID=mRNA_11616|Name=jgi.p|Nanoce1779_2|615852|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
CAGAATCTTTAGGATCCACAGCAGCCACAAGCAGAAAAAGCGAGCAAGCA
ACCCCGAAGCTAGCCCGGCTTACCAGCTACTCCTCCTGTCATAAGTGCCT
GAGGATCTACTACAGCACCCACTCTTCACTCTGCACAGCAGCCAGGCCTA
AGGCACCGCAACAGCGTCCATATGTCATTCTCCAAGATATTACCTGATCT
CTCCTTTCCCCCCGCCCGTCGACCTTCCTCCGACTCAATCCCTCCGCGTT
CGTGCCCGCCCTCCTTCCCGGAAGAGGCCGGTGATACATCCATCCTCTAC
CAGGCTGTCAAGTCTCTTTACGACCTCAGCGGTGACGTCAAAGAAGTTTA
CAACATGCACTATATACCAGAGACTGCTTCATTCATCGACCCTGTCGTCA
TGGTCAAGAATAGCACTTCTGATTGCATCGGACAATTCCGGGCCTTGCGT
GGCCTCTTCTCCAAGGCCGAGATCGAGACCCACAGCGTCACCCGCGGGGG
GAACAAACTAGTTATCGATTGGAAAATCACTTACTATCCTCGAATTCTGC
CATCATTTTGTGCCATATCTGTTCATACCATCACAATTCTTACTCTCATG
GAGCCTGACGAGGGCACGCCTGAAAGAGGTAAGGCTTCTACGCGAATTTT
GGAGCATGTAGACCATTGGTCTGTGCACGAATTAATTTCTTCGGTGCCAA
TTGTATCATTCGTATATACTTCCTTGTGGCGCCCGGCGGTGGGGAAGGGA
AGTAGCGTGCTGACGAATGTGTTGTATGGTTTGTTTGTTGCGAAAGGACC
AACAGGGAAAAATGGGAGCCCTGCTGAGTGCAATAGTGGAATTGCTGGAG
GAGGAGGAGGAAAACAAGGAGGAGGAGGAGGAGAAGAAGAAGAAGGAGGT
GCTGTGGTGGGAGGAGGAGAAGGCGAGTGAGGGGTCGGGTTGGGGGCCGA
AATT
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protein sequence of jgi.p|Nanoce1779_2|615852

>mRNA_11616-protein ID=mRNA_11616-protein|Name=jgi.p|Nanoce1779_2|615852|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MSFSKILPDLSFPPARRPSSDSIPPRSCPPSFPEEAGDTSILYQAVKSLY
DLSGDVKEVYNMHYIPETASFIDPVVMVKNSTSDCIGQFRALRGLFSKAE
IETHSVTRGGNKLVIDWKITYYPRILPSFCAISVHTITILTLMEPDEGTP
ERGKASTRILEHVDHWSVHELISSVPIVSFVYTSLWRPAVGKGSSVLTNV
LYGLFVAKGPTGKNGSPAECNSGIAGGGGGKQGGGGGEEEEGGAVVGGGE
GE*
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mRNA from alignment at scaffold_108:25272..26225+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11616 ID=mRNA_11616|Name=jgi.p|Nanoce1779_2|615852|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_108:25272..26225+ (Nannochloropsis oceanica)
CAGAATCTTTAGGATCCACAGCAGCCACAAGCAGAAAAAGCGAGCAAGCA
ACCCCGAAGCTAGCCCGGCTTACCAGCTACTCCTCCTGTCATAAGTGCCT
GAGGATCTACTACAGCACCCACTCTTCACTCTGCACAGCAGCCAGGCCTA
AGGCACCGCAACAGCGTCCATATGTCATTCTCCAAGATATTACCTGATCT
CTCCTTTCCCCCCGCCCGTCGACCTTCCTCCGACTCAATCCCTCCGCGTT
CGTGCCCGCCCTCCTTCCCGGAAGAGGCCGGTGATACATCCATCCTCTAC
CAGGCTGTCAAGTCTCTTTACGACCTCAGCGGTGACGTCAAAGAAGTTTA
CAACATGCACTATATACCAGAGACTGCTTCATTCATCGACCCTGTCGTCA
TGGTCAAGAATAGCACTTCTGATTGCATCGGACAATTCCGGGCCTTGCGT
GGCCTCTTCTCCAAGGCCGAGATCGAGACCCACAGCGTCACCCGCGGGGG
GAACAAACTAGTTATCGATTGGAAAATCACTTACTATCCTCGAATTCTGC
CATCATTTTGTGCCATATCTGTTCATACCATCACAATTCTTACTCTCATG
GAGCCTGACGAGGGCACGCCTGAAAGAGGTAAGGCTTCTACGCGAATTTT
GGAGCATGTAGACCATTGGTCTGTGCACGAATTAATTTCTTCGGTGCCAA
TTGTATCATTCGTATATACTTCCTTGTGGCGCCCGGCGGTGGGGAAGGGA
AGTAGCGTGCTGACGAATGTGTTGTATGGTTTGTTTGTTGCGAAAGGACC
AACAGGGAAAAATGGGAGCCCTGCTGAGTGCAATAGTGGAATTGCTGGAG
GAGGAGGAGGAAAACAAGGAGGAGGAGGAGGAGAAGAAGAAGAAGGAGGT
GCTGTGGTGGGAGGAGGAGAAGGCGAGTGAGGGGTCGGGTTGGGGGCCGA
AATT
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Coding sequence (CDS) from alignment at scaffold_108:25272..26225+

>mRNA_11616 ID=mRNA_11616|Name=jgi.p|Nanoce1779_2|615852|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_108:25272..26225+ (Nannochloropsis oceanica)
ATGTCATTCTCCAAGATATTACCTGATCTCTCCTTTCCCCCCGCCCGTCG
ACCTTCCTCCGACTCAATCCCTCCGCGTTCGTGCCCGCCCTCCTTCCCGG
AAGAGGCCGGTGATACATCCATCCTCTACCAGGCTGTCAAGTCTCTTTAC
GACCTCAGCGGTGACGTCAAAGAAGTTTACAACATGCACTATATACCAGA
GACTGCTTCATTCATCGACCCTGTCGTCATGGTCAAGAATAGCACTTCTG
ATTGCATCGGACAATTCCGGGCCTTGCGTGGCCTCTTCTCCAAGGCCGAG
ATCGAGACCCACAGCGTCACCCGCGGGGGGAACAAACTAGTTATCGATTG
GAAAATCACTTACTATCCTCGAATTCTGCCATCATTTTGTGCCATATCTG
TTCATACCATCACAATTCTTACTCTCATGGAGCCTGACGAGGGCACGCCT
GAAAGAGGTAAGGCTTCTACGCGAATTTTGGAGCATGTAGACCATTGGTC
TGTGCACGAATTAATTTCTTCGGTGCCAATTGTATCATTCGTATATACTT
CCTTGTGGCGCCCGGCGGTGGGGAAGGGAAGTAGCGTGCTGACGAATGTG
TTGTATGGTTTGTTTGTTGCGAAAGGACCAACAGGGAAAAATGGGAGCCC
TGCTGAGTGCAATAGTGGAATTGCTGGAGGAGGAGGAGGAAAACAAGGAG
GAGGAGGAGGAGAAGAAGAAGAAGGAGGTGCTGTGGTGGGAGGAGGAGAA
GGCGAGTGA
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Synonyms
Publications