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Properties
| Property Name | Value |
|---|
| TranscriptId | 561543 |
| Track | FilteredModels2 |
| ProteinId | 561457 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_108 | supercontig | scaffold_108:22634..24916 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11615 ID=mRNA_11615|Name=jgi.p|Nanoce1779_2|561457|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
ATGCTTGCTAAGCCTCCCGGGGGGAGCTCTAAATCGCTGGGTAAAATCCT
CGGCCAGGACCGCACGAAAAGCAGCGGCGGCCCAGCCCAGGGCACTTATG
CAGGTGCCCATCCGAGCAGCAACAGCGGCAGCACTAGCACCAGCACCCAC
ACGGCCAACGCTAATGCAAGCCAGCTGCCAAATTTTGAGGAGTATGTGCG
TGCAAGAGACTATGCAGGTGCGTTGGCCATTTTAGAGTTCACGCGACGGG
TGGAGCGGGTTGACGGGCGCACGACATTGGAGAGGCTGTTGTGGCGGGCC
TACTGCGCTTTCCATGGAGGGGATTACGAGCTGGCCTTACGAACCTACGA
GATGATCTTGCGGCGGGAGTATTTCGCATGTGGTGGGGTTGATGGCATGT
ATTTGTATTTAGCTTGTTGCCATTACTACCTTCAGCAATATGATGATGCA
GAGCGTGCAGCACTGCAAGGGCTGCAGGAGGAGGGGGGCTTGCGGAATCG
CCTCTTATTTCATATCGCCCACCGACAGGGGAACGAGACCAAGCTCCTTC
TATACCACCAGAAACTCACTGAAGGAGTAGAAGATCAATTGAGCTTAGCC
GCGATTCATTATTCGCGTTCACATTTCCAGGAGGCGACGGACATTTACAA
GCGGTTGTTGTTGGAGCATCGGGATGACTTGGCCCTGAATATGTATGTGG
CTATATGTTATTATAAAATGGATCATTATGATGTATCCCTAGAGATTCTC
GCGGCGTACCTGCAAGCCCTCCCTGGGTCGTGGGTGGGGCTAAATCTAAA
GGCGTGTAATACCTTCAGGCTGTATAATGGGAAGGCGGCGGAGGCGATAT
TGGTCAAGGGGTTGGTTGATGGATACGGCGTGGACTTGCAGCAGCATGAG
CTGTTGAAGCATAATTTGGTCGTCTTCCGCGGAGGGGAGGGGGCGTTGAC
CATCTTACCCCCCTTGGTGGATGTCATCCCAGAGGCAAGATTGAATCTGG
TGATTTGGTACTTGAGGCATGACGGAGTGGAGGAGGCGTTTGAGTTGATG
AAAGACTTGGAGCCGAGCACGCCGCAGGAATATATCTTGAAAGGAGTGGT
GAACGCTTGTCTGGGGCAGTCGTTGGGATCGAGGGAACATTTGAAGATGG
CTCAACAGCTGTTTCAGCTGGTGGGGGCGGCGGCAAGTGAGTGCGACACG
ATTCCGGGGAGACAGAGCATGGCTTCTTGTTTTTATTTGCTGAAGAACTT
CGAGGATGTGAACACGTACTTGTCGAGTGTGAAAACGTACATGTATCACG
ATGATGATTTCCATTGGAATTATGGAATCTCACTGGCGGCCTCCGGGGAT
TTTAAGGCCGCGGAGGAGTCTTTGTTATCTGTCAGGAGTGAAAGATATAA
AGCTGAACCTGCATATCTGGCGTGGTTGTGCCGATGCTGCGTGATGAATG
GCAACCCACACTTTGCGTGGGAGCTGTACTTGCAGGCGGATGCGGCTGTG
GGGGCAGCAGCGACATTTGTCTTGTTACAATTGTTGGCGAACGATTGTTA
TCGAATGGGGCATTTTCTGCAGGCTGCCAAGGCGTTCGGTGTGCTTGAGA
GGCTAGATCCGGCAGACCCTGATTATTGGGAGGGTAAGCGAGGGGCTTGT
GCGGGGGTATTTCAGTTGTGTTTGGCGGGAAAATTGCCCAAAGAAGATTT
GAGAGAGGTGATGGCTCTACTGGGAGAGGGGAGTGCGACCAACCCGCAGG
CGGAGTACATGCTGCGCGTGTTGAAGAAGTATGCCACGGAGTAGAAAGAG
CGAAGAGGAGGCGCTGGAGGATGGAGGGAGAGGGAAGGAGATGGGTGAAA
AAAAAGTGTACAGGAAATAAGCTAATCAACATATTCTTCATATTTTGAAA
ACCTCCTTGGCTTTTCTTGCGCGTGGTTTTGCGATAATGGACAGGAAGCA
GAGAGAAGCATGACGCGAACGACGAACAACGCTGAAAGGGGCGCAAAAAA
TGAGGCTTCGGTTGTGCTTACCTTTGCTCGCAAACCCTAAAATCGCTTTG
TATAATATCTTTTCCACTCTTTTATGGAAACATTTGGTCTCGTAGTGCAA
GCGGTTACTGCGAAAAAGGCATCTGCTTTTGCGTTCTAAAAAGAAGCATT
TGTTTTCCTTCGTTCTTCT back to topprotein sequence of jgi.p|Nanoce1779_2|561457 >mRNA_11615-protein ID=mRNA_11615-protein|Name=jgi.p|Nanoce1779_2|561457|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MLAKPPGGSSKSLGKILGQDRTKSSGGPAQGTYAGAHPSSNSGSTSTSTH
TANANASQLPNFEEYVRARDYAGALAILEFTRRVERVDGRTTLERLLWRA
YCAFHGGDYELALRTYEMILRREYFACGGVDGMYLYLACCHYYLQQYDDA
ERAALQGLQEEGGLRNRLLFHIAHRQGNETKLLLYHQKLTEGVEDQLSLA
AIHYSRSHFQEATDIYKRLLLEHRDDLALNMYVAICYYKMDHYDVSLEIL
AAYLQALPGSWVGLNLKACNTFRLYNGKAAEAILVKGLVDGYGVDLQQHE
LLKHNLVVFRGGEGALTILPPLVDVIPEARLNLVIWYLRHDGVEEAFELM
KDLEPSTPQEYILKGVVNACLGQSLGSREHLKMAQQLFQLVGAAASECDT
IPGRQSMASCFYLLKNFEDVNTYLSSVKTYMYHDDDFHWNYGISLAASGD
FKAAEESLLSVRSERYKAEPAYLAWLCRCCVMNGNPHFAWELYLQADAAV
GAAATFVLLQLLANDCYRMGHFLQAAKAFGVLERLDPADPDYWEGKRGAC
AGVFQLCLAGKLPKEDLREVMALLGEGSATNPQAEYMLRVLKKYATE* back to topmRNA from alignment at scaffold_108:22634..24916- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11615 ID=mRNA_11615|Name=jgi.p|Nanoce1779_2|561457|organism=Nannochloropsis oceanica|type=mRNA|length=2283bp|location=Sequence derived from alignment at scaffold_108:22634..24916- (Nannochloropsis oceanica)
ATGCTTGCTAAGCCTCCCGGGGGGAGCTCTAAATCGCTGGGTAAAATCCT
CGGCCAGGACCGCACGAAAAGCAGCGGCGGCCCAGCCCAGGGCACTTATG
CAGGTGCCCATCCGAGCAGCAACAGCGGCAGCACTAGCACCAGCACCCAC
ACGGCCAACGCTAATGCAAGCCAGCTGCCAAATTTTGAGGAGTATGTGCG
TGCAAGAGACTATGCAGGTGCGTTGGCCATTTTAGAGTTCACGCGACGGG
TGGAGCGGGTTGACGGGCGCACGACATTGGAGAGGCTGTTGTGGCGGGCC
TACTGCGCTTTCCATGGAGGGGATTACGAGCTGGCCTTACGAACCTACGA
GATGATCTTGCGGCGGGAGTATTTCGCATGTGGTGGGGTTGATGGCAGTC
AGGGCACTGCCAACACGACCACCACCACCACCAGCAGCAGCAGCAGTCGG
TTTCCGGCCACCACAGAAGGAGCAGCGGCAGTGGGACATTCAGAGGCGCC
TCCTGCCGAAGTGTATTTGTATTTAGCTTGTTGCCATTACTACCTTCAGC
AATATGATGATGCAGAGCGTGCAGCACTGCAAGGGCTGCAGGAGGAGGGG
GGCTTGCGGAATCGCCTCTTATTTCATATCGCCCACCGACAGGGGAACGA
GACCAAGCTCCTTCTATACCACCAGAAACTCACTGAAGGAGTAGAAGATC
AATTGAGCTTAGCCGCGATTCATTATTCGCGTTCACATTTCCAGGAGGCG
ACGGACATTTACAAGCGGTTGTTGTTGGAGCATCGGGATGACTTGGCCCT
GAATATGTATGTGGCTATATGTTATTATAAAATGGATCATTATGATGTAT
CCCTAGAGATTCTCGCGGCGTACCTGCAAGCCCTCCCTGGGTCGTGGGTG
GGGCTAAATCTAAAGGCGTGTAATACCTTCAGGCTGTATAATGGGAAGGC
GGCGGAGGCGATATTGGTCAAGGGGTTGGTTGATGGATACGGCGTGGACT
TGCAGCAGCATGAGCTGTTGAAGCATAATTTGGTCGTCTTCCGCGGAGGG
GAGGGGGCGTTGACCATCTTACCCCCCTTGGTGGATGTCATCCCAGAGGC
AAGATTGAATCTGGTGATTTGGTACTTGAGGCATGACGGAGTGGAGGAGG
CGTTTGAGTTGATGAAAGACTTGGAGCCGAGCACGCCGCAGGAATATATC
TTGAAAGGAGTGGTGAACGCTTGTCTGGGGCAGTCGTTGGGATCGAGGGA
ACATTTGAAGATGGCTCAACAGCTGTTTCAGCTGGTGGGGGCGGCGGCAA
GTGAGTGCGACACGATTCCGGGGAGACAGAGCATGGCTTCTTGTTTTTAT
TTGCTGAAGAACTTCGAGGATGTGAACACGTACTTGTCGAGTGTGAAAAC
GTACATGTATCACGATGATGATTTCCATTGGAATTATGGAATCTCACTGG
CGGCCTCCGGGGATTTTAAGGCCGCGGAGGAGTCTTTGTTATCTGTCAGG
AGTGAAAGATATAAAGCTGAACCTGCATATCTGGCGTGGTTGTGCCGATG
CTGCGTGATGAATGGCAACCCACACTTTGCGTGGGAGCTGTACTTGCAGG
CGGATGCGGCTGTGGGGGCAGCAGCGACATTTGTCTTGTTACAATTGTTG
GCGAACGATTGTTATCGAATGGGGCATTTTCTGCAGGCTGCCAAGGCGTT
CGGTGTGCTTGAGAGGCTAGATCCGGCAGACCCTGATTATTGGGAGGGTA
AGCGAGGGGCTTGTGCGGGGGTATTTCAGTTGTGTTTGGCGGGAAAATTG
CCCAAAGAAGATTTGAGAGAGGTGATGGCTCTACTGGGAGAGGGGAGTGC
GACCAACCCGCAGGCGGAGTACATGCTGCGCGTGTTGAAGAAGTATGCCA
CGGAGTAGAAAGAGCGAAGAGGAGGCGCTGGAGGATGGAGGGAGAGGGAA
GGAGATGGGTGAAAAAAAAGTGTACAGGAAATAAGCTAATCAACATATTC
TTCATATTTTGAAAACCTCCTTGGCTTTTCTTGCGCGTGGTTTTGCGATA
ATGGACAGGAAGCAGAGAGAAGCATGACGCGAACGACGAACAACGCTGAA
AGGGGCGCAAAAAATGAGGCTTCGGTTGTGCTTACCTTTGCTCGCAAACC
CTAAAATCGCTTTGTATAATATCTTTTCCACTCTTTTATGGAAACATTTG
GTCTCGTAGTGCAAGCGGTTACTGCGAAAAAGGCATCTGCTTTTGCGTTC
TAAAAAGAAGCATTTGTTTTCCTTCGTTCTTCT back to topCoding sequence (CDS) from alignment at scaffold_108:22634..24916- >mRNA_11615 ID=mRNA_11615|Name=jgi.p|Nanoce1779_2|561457|organism=Nannochloropsis oceanica|type=CDS|length=3588bp|location=Sequence derived from alignment at scaffold_108:22634..24916- (Nannochloropsis oceanica)
TGTATTTGTATTTAGCTTGTTGCCATTACTACCTTCAGCAATATGATGAT
GCAGAGCGTGCAGCACTGCAAGGGCTGCAGGAGGAGGGGGGCTTGCGGAA
TCGCCTCTTATTTCATATCGCCCACCGACAGGGGAACGAGACCAAGCTCC
TTCTATACCACCAGAAACTCACTGAAGGAGTAGAAGATCAATTGAGCTTA
GCCGCGATTCATTATTCGCGTTCACATTTCCAGGAGGCGACGGACATTTA
CAAGCGGTTGTTGTTGGAGCATCGGGATGACTTGGCCCTGAATATGTATG
TGGCTATATGTTATTATAAAATGGATCATTATGATGTATCCCTAGAGATT
CTCGCGGCGTACCTGCAAGCCCTCCCTGGGTCGTGGGTGGGGCTAAATCT
AAAGGCGTGTAATACCTTCAGGCTGTATAATGGGAAGGCGGCGGAGGCGA
TATTGGTCAAGGGGTTGGTTGATGGATACGGCGTGGACTTGCAGCAGCAT
GAGCTGTTGAAGCATAATTTGGTCGTCTTCCGCGGAGGGGAGGGGGCGTT
GACCATCTTACCCCCCTTGGTGGATGTCATCCCAGAGGCAAGATTGAATC
TGGTGATTTGGTACTTGAGGCATGACGGAGTGGAGGAGGCGTTTGAGTTG
ATGAAAGACTTGGAGCCGAGCACGCCGCAGGAATATATCTTGAAAGGAGT
GGTGAACGCTTGTCTGGGGCAGTCGTTGGGATCGAGGGAACATTTGAAGA
TGGCTCAACAGCTGTTTCAGCTGGTGGGGGCGGCGGCAAGTGAGTGCGAC
ACGATTCCGGGGAGACAGAGCATGGCTTCTTGTTTTTATTTGCTGAAGAA
CTTCGAGGATGTGAACACGTACTTGTCGAGTGTGAAAACGTACATGTATC
ACGATGATGATTTCCATTGGAATTATGGAATCTCACTGGCGGCCTCCGGG
GATTTTAAGGCCGCGGAGGAGTCTTTGTTATCTGTCAGGAGTGAAAGATA
TAAAGCTGAACCTGCATATCTGGCGTGGTTGTGCCGATGCTGCGTGATGA
ATGGCAACCCACACTTTGCGTGGGAGCTGTACTTGCAGGCGGATGCGGCT
GTGGGGGCAGCAGCGACATTTGTCTTGTTACAATTGTTGGCGAACGATTG
TTATCGAATGGGGCATTTTCTGCAGGCTGCCAAGGCGTTCGGTGTGCTTG
AGAGGCTAGATCCGGCAGACCCTGATTATTGGGAGGGTAAGCGAGGGGCT
TGTGCGGGGGTATTTCAGTTGTGTTTGGCGGGAAAATTGCCCAAAGAAGA
TTTGAGAGAGGTGATGGCTCTACTGGGAGAGGGGAGTGCGACCAACCCGC
AGGCGGAGTACATGCTGCGCGTGTTGAAGAAGTATGCCACGGAGTAGATG
CTTGCTAAGCCTCCCGGGGGGAGCTCTAAATCGCTGGGTAAAATCCTCGG
CCAGGACCGCACGAAAAGCAGCGGCGGCCCAGCCCAGGGCACTTATGCAG
GTGCCCATCCGAGCAGCAACAGCGGCAGCACTAGCACCAGCACCCACACG
GCCAACGCTAATGCAAGCCAGCTGCCAAATTTTGAGGAGTATGTGCGTGC
AAGAGACTATGCAGGTGCGTTGGCCATTTTAGAGTTCACGCGACGGGTGG
AGCGGGTTGACGGGCGCACGACATTGGAGAGGCTGTTGTGGCGGGCCTAC
TGCGCTTTCCATGGAGGGGATTACGAGCTGGCCTTACGAACCTACGAGAT
GATCTTGCGGCGGGAGTATTTCGCATGTGGTGGGGTTGATGGCATGTATT
TGTATTTAGCTTGTTGCCATTACTACCTTCAGCAATATGATGATGCAGAG
CGTGCAGCACTGCAAGGGCTGCAGGAGGAGGGGGGCTTGCGGAATCGCCT
CTTATTTCATATCGCCCACCGACAGGGGAACGAGACCAAGCTCCTTCTAT
ACCACCAGAAACTCACTGAAGGAGTAGAAGATCAATTGAGCTTAGCCGCG
ATTCATTATTCGCGTTCACATTTCCAGGAGGCGACGGACATTTACAAGCG
GTTGTTGTTGGAGCATCGGGATGACTTGGCCCTGAATATGTATGTGGCTA
TATGTTATTATAAAATGGATCATTATGATGTATCCCTAGAGATTCTCGCG
GCGTACCTGCAAGCCCTCCCTGGGTCGTGGGTGGGGCTAAATCTAAAGGC
GTGTAATACCTTCAGGCTGTATAATGGGAAGGCGGCGGAGGCGATATTGG
TCAAGGGGTTGGTTGATGGATACGGCGTGGACTTGCAGCAGCATGAGCTG
TTGAAGCATAATTTGGTCGTCTTCCGCGGAGGGGAGGGGGCGTTGACCAT
CTTACCCCCCTTGGTGGATGTCATCCCAGAGGCAAGATTGAATCTGGTGA
TTTGGTACTTGAGGCATGACGGAGTGGAGGAGGCGTTTGAGTTGATGAAA
GACTTGGAGCCGAGCACGCCGCAGGAATATATCTTGAAAGGAGTGGTGAA
CGCTTGTCTGGGGCAGTCGTTGGGATCGAGGGAACATTTGAAGATGGCTC
AACAGCTGTTTCAGCTGGTGGGGGCGGCGGCAAGTGAGTGCGACACGATT
CCGGGGAGACAGAGCATGGCTTCTTGTTTTTATTTGCTGAAGAACTTCGA
GGATGTGAACACGTACTTGTCGAGTGTGAAAACGTACATGTATCACGATG
ATGATTTCCATTGGAATTATGGAATCTCACTGGCGGCCTCCGGGGATTTT
AAGGCCGCGGAGGAGTCTTTGTTATCTGTCAGGAGTGAAAGATATAAAGC
TGAACCTGCATATCTGGCGTGGTTGTGCCGATGCTGCGTGATGAATGGCA
ACCCACACTTTGCGTGGGAGCTGTACTTGCAGGCGGATGCGGCTGTGGGG
GCAGCAGCGACATTTGTCTTGTTACAATTGTTGGCGAACGATTGTTATCG
AATGGGGCATTTTCTGCAGGCTGCCAAGGCGTTCGGTGTGCTTGAGAGGC
TAGATCCGGCAGACCCTGATTATTGGGAGGGTAAGCGAGGGGCTTGTGCG
GGGGTATTTCAGTTGTGTTTGGCGGGAAAATTGCCCAAAGAAGATTTGAG
AGAGGTGATGGCTCTACTGGGAGAGGGGAGTGCGACCAACCCGCAGGCGG
AGTACATGCTGCGCGTGTTGAAGAAGTATGCCACGGAGTAGATGCTTGCT
AAGCCTCCCGGGGGGAGCTCTAAATCGCTGGGTAAAATCCTCGGCCAGGA
CCGCACGAAAAGCAGCGGCGGCCCAGCCCAGGGCACTTATGCAGGTGCCC
ATCCGAGCAGCAACAGCGGCAGCACTAGCACCAGCACCCACACGGCCAAC
GCTAATGCAAGCCAGCTGCCAAATTTTGAGGAGTATGTGCGTGCAAGAGA
CTATGCAGGTGCGTTGGCCATTTTAGAGTTCACGCGACGGGTGGAGCGGG
TTGACGGGCGCACGACATTGGAGAGGCTGTTGTGGCGGGCCTACTGCGCT
TTCCATGGAGGGGATTACGAGCTGGCCTTACGAACCTACGAGATGATCTT
GCGGCGGGAGTATTTCGCATGTGGTGGGGTTGATGGCA back to top
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