scaffold_156, scaffold_156 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_156
Unique Name	scaffold_156
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	30913
Alignment location	jgi.p\|Nanoce1779_2\|98391:17496..19530 -
Alignment location	jgi.p\|Nanoce1779_2\|98391:17496..19530 -
Alignment location	CDS_11396:17747..19270 -
Alignment location	jgi.p\|Nanoce1779_2\|98412:25501..26315 +
Alignment location	jgi.p\|Nanoce1779_2\|98412:25501..26315 +
Alignment location	CDS_11399:25501..25926 +
Alignment location	jgi.p\|Nanoce1779_2\|548455:8370..11738 -
Alignment location	jgi.p\|Nanoce1779_2\|548455:8370..11738 -
Alignment location	CDS_11392:10198..11043 -
Alignment location	CDS_11392:8804..9574 -
Alignment location	jgi.p\|Nanoce1779_2\|570821:25976..26314 -
Alignment location	jgi.p\|Nanoce1779_2\|570821:25976..26314 -
Alignment location	CDS_11400:25976..26314 -
Alignment location	jgi.p\|Nanoce1779_2\|618408:1118..3117 +
Alignment location	jgi.p\|Nanoce1779_2\|618408:1118..3117 +
Alignment location	CDS_11389:1727..1736 +
Alignment location	CDS_11389:1852..1971 +
Alignment location	CDS_11389:2013..2168 +
Alignment location	CDS_11389:2271..2920 +
Alignment location	jgi.p\|Nanoce1779_2\|618412:3195..4684 +
Alignment location	jgi.p\|Nanoce1779_2\|618412:3195..4684 +
Alignment location	CDS_11390:3254..3639 +
Alignment location	CDS_11390:3721..3867 +
Alignment location	CDS_11390:4143..4650 +
Alignment location	jgi.p\|Nanoce1779_2\|618418:4700..7370 -
Alignment location	jgi.p\|Nanoce1779_2\|618418:4700..7370 -
Alignment location	CDS_11391:6924..7265 -
Alignment location	CDS_11391:4819..6834 -
Alignment location	jgi.p\|Nanoce1779_2\|618426:13359..15032 +
Alignment location	jgi.p\|Nanoce1779_2\|618426:13359..15032 +
Alignment location	CDS_11394:13373..13453 +
Alignment location	CDS_11394:13943..14458 +
Alignment location	CDS_11394:14484..14678 +
Alignment location	CDS_11394:14695..14805 +
Alignment location	jgi.p\|Nanoce1779_2\|618427:15068..16933 -
Alignment location	jgi.p\|Nanoce1779_2\|618427:15068..16933 -
Alignment location	CDS_11395:15515..16881 -
Alignment location	CDS_11395:15148..15322 -
Alignment location	jgi.p\|Nanoce1779_2\|618440:22246..23522 -
Alignment location	jgi.p\|Nanoce1779_2\|618440:22246..23522 -
Alignment location	CDS_11397:23280..23522 -
Alignment location	CDS_11397:23117..23215 -
Alignment location	CDS_11397:22975..23082 -
Alignment location	CDS_11397:22597..22765 -
Alignment location	CDS_11397:22445..22571 -
Alignment location	CDS_11397:22246..22420 -
Alignment location	jgi.p\|Nanoce1779_2\|618443:23856..25563 +
Alignment location	jgi.p\|Nanoce1779_2\|618443:23856..25563 +
Alignment location	CDS_11398:23973..24111 +
Alignment location	CDS_11398:24315..24442 +
Alignment location	CDS_11398:24480..24757 +
Alignment location	CDS_11398:24806..25004 +
Alignment location	jgi.p\|Nanoce1779_2\|618451:28717..29227 +
Alignment location	jgi.p\|Nanoce1779_2\|618451:28717..29227 +
Alignment location	CDS_11402:28752..28843 +
Alignment location	CDS_11402:28947..29175 +
Alignment location	jgi.p\|Nanoce1779_2\|650232:26340..27024 -
Alignment location	jgi.p\|Nanoce1779_2\|650232:26340..27024 -
Alignment location	CDS_11401:26340..27005 -
Alignment location	jgi.p\|Nanoce1779_2\|98391:17747..19270 -
Alignment location	jgi.p\|Nanoce1779_2\|98412:25501..25926 +
Alignment location	jgi.p\|Nanoce1779_2\|548455:8804..11043 -
Alignment location	jgi.p\|Nanoce1779_2\|570821:25976..26314 -
Alignment location	jgi.p\|Nanoce1779_2\|618408:1727..2920 +
Alignment location	jgi.p\|Nanoce1779_2\|618412:3254..4650 +
Alignment location	jgi.p\|Nanoce1779_2\|618418:4819..7265 -
Alignment location	jgi.p\|Nanoce1779_2\|618426:13373..14805 +
Alignment location	jgi.p\|Nanoce1779_2\|618427:15148..16881 -
Alignment location	jgi.p\|Nanoce1779_2\|618440:22246..23522 -
Alignment location	jgi.p\|Nanoce1779_2\|618443:23973..25004 +
Alignment location	jgi.p\|Nanoce1779_2\|618451:28752..29175 +
Alignment location	jgi.p\|Nanoce1779_2\|650232:26340..27005 -
Alignment location	ncniL024:1119..26314 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|98391	gene	jgi.p\|Nanoce1779_2\|98391:17496..19530 -
jgi.p\|Nanoce1779_2\|98391	mRNA	jgi.p\|Nanoce1779_2\|98391:17496..19530 -
CDS_11396	CDS	CDS_11396:17747..19270 -
jgi.p\|Nanoce1779_2\|98412	gene	jgi.p\|Nanoce1779_2\|98412:25501..26315 +
jgi.p\|Nanoce1779_2\|98412	mRNA	jgi.p\|Nanoce1779_2\|98412:25501..26315 +
CDS_11399	CDS	CDS_11399:25501..25926 +
jgi.p\|Nanoce1779_2\|548455	gene	jgi.p\|Nanoce1779_2\|548455:8370..11738 -
jgi.p\|Nanoce1779_2\|548455	mRNA	jgi.p\|Nanoce1779_2\|548455:8370..11738 -
CDS_11392	CDS	CDS_11392:10198..11043 -
CDS_11392	CDS	CDS_11392:8804..9574 -
jgi.p\|Nanoce1779_2\|570821	gene	jgi.p\|Nanoce1779_2\|570821:25976..26314 -
jgi.p\|Nanoce1779_2\|570821	mRNA	jgi.p\|Nanoce1779_2\|570821:25976..26314 -
CDS_11400	CDS	CDS_11400:25976..26314 -
jgi.p\|Nanoce1779_2\|618408	gene	jgi.p\|Nanoce1779_2\|618408:1118..3117 +
jgi.p\|Nanoce1779_2\|618408	mRNA	jgi.p\|Nanoce1779_2\|618408:1118..3117 +
CDS_11389	CDS	CDS_11389:1727..1736 +
CDS_11389	CDS	CDS_11389:1852..1971 +
CDS_11389	CDS	CDS_11389:2013..2168 +
CDS_11389	CDS	CDS_11389:2271..2920 +
jgi.p\|Nanoce1779_2\|618412	gene	jgi.p\|Nanoce1779_2\|618412:3195..4684 +
jgi.p\|Nanoce1779_2\|618412	mRNA	jgi.p\|Nanoce1779_2\|618412:3195..4684 +
CDS_11390	CDS	CDS_11390:3254..3639 +
CDS_11390	CDS	CDS_11390:3721..3867 +
CDS_11390	CDS	CDS_11390:4143..4650 +
jgi.p\|Nanoce1779_2\|618418	gene	jgi.p\|Nanoce1779_2\|618418:4700..7370 -
jgi.p\|Nanoce1779_2\|618418	mRNA	jgi.p\|Nanoce1779_2\|618418:4700..7370 -
CDS_11391	CDS	CDS_11391:6924..7265 -
CDS_11391	CDS	CDS_11391:4819..6834 -
jgi.p\|Nanoce1779_2\|618426	gene	jgi.p\|Nanoce1779_2\|618426:13359..15032 +
jgi.p\|Nanoce1779_2\|618426	mRNA	jgi.p\|Nanoce1779_2\|618426:13359..15032 +
CDS_11394	CDS	CDS_11394:13373..13453 +
CDS_11394	CDS	CDS_11394:13943..14458 +
CDS_11394	CDS	CDS_11394:14484..14678 +
CDS_11394	CDS	CDS_11394:14695..14805 +
jgi.p\|Nanoce1779_2\|618427	gene	jgi.p\|Nanoce1779_2\|618427:15068..16933 -
jgi.p\|Nanoce1779_2\|618427	mRNA	jgi.p\|Nanoce1779_2\|618427:15068..16933 -
CDS_11395	CDS	CDS_11395:15515..16881 -
CDS_11395	CDS	CDS_11395:15148..15322 -
jgi.p\|Nanoce1779_2\|618440	gene	jgi.p\|Nanoce1779_2\|618440:22246..23522 -
jgi.p\|Nanoce1779_2\|618440	mRNA	jgi.p\|Nanoce1779_2\|618440:22246..23522 -
CDS_11397	CDS	CDS_11397:23280..23522 -
CDS_11397	CDS	CDS_11397:23117..23215 -
CDS_11397	CDS	CDS_11397:22975..23082 -
CDS_11397	CDS	CDS_11397:22597..22765 -
CDS_11397	CDS	CDS_11397:22445..22571 -
CDS_11397	CDS	CDS_11397:22246..22420 -
jgi.p\|Nanoce1779_2\|618443	gene	jgi.p\|Nanoce1779_2\|618443:23856..25563 +
jgi.p\|Nanoce1779_2\|618443	mRNA	jgi.p\|Nanoce1779_2\|618443:23856..25563 +
CDS_11398	CDS	CDS_11398:23973..24111 +
CDS_11398	CDS	CDS_11398:24315..24442 +
CDS_11398	CDS	CDS_11398:24480..24757 +
CDS_11398	CDS	CDS_11398:24806..25004 +
jgi.p\|Nanoce1779_2\|618451	gene	jgi.p\|Nanoce1779_2\|618451:28717..29227 +
jgi.p\|Nanoce1779_2\|618451	mRNA	jgi.p\|Nanoce1779_2\|618451:28717..29227 +
CDS_11402	CDS	CDS_11402:28752..28843 +
CDS_11402	CDS	CDS_11402:28947..29175 +
jgi.p\|Nanoce1779_2\|650232	gene	jgi.p\|Nanoce1779_2\|650232:26340..27024 -
jgi.p\|Nanoce1779_2\|650232	mRNA	jgi.p\|Nanoce1779_2\|650232:26340..27024 -
CDS_11401	CDS	CDS_11401:26340..27005 -
jgi.p\|Nanoce1779_2\|98391	polypeptide	jgi.p\|Nanoce1779_2\|98391:17747..19270 -
jgi.p\|Nanoce1779_2\|98412	polypeptide	jgi.p\|Nanoce1779_2\|98412:25501..25926 +
jgi.p\|Nanoce1779_2\|548455	polypeptide	jgi.p\|Nanoce1779_2\|548455:8804..11043 -
jgi.p\|Nanoce1779_2\|570821	polypeptide	jgi.p\|Nanoce1779_2\|570821:25976..26314 -
jgi.p\|Nanoce1779_2\|618408	polypeptide	jgi.p\|Nanoce1779_2\|618408:1727..2920 +
jgi.p\|Nanoce1779_2\|618412	polypeptide	jgi.p\|Nanoce1779_2\|618412:3254..4650 +
jgi.p\|Nanoce1779_2\|618418	polypeptide	jgi.p\|Nanoce1779_2\|618418:4819..7265 -
jgi.p\|Nanoce1779_2\|618426	polypeptide	jgi.p\|Nanoce1779_2\|618426:13373..14805 +
jgi.p\|Nanoce1779_2\|618427	polypeptide	jgi.p\|Nanoce1779_2\|618427:15148..16881 -
jgi.p\|Nanoce1779_2\|618440	polypeptide	jgi.p\|Nanoce1779_2\|618440:22246..23522 -
jgi.p\|Nanoce1779_2\|618443	polypeptide	jgi.p\|Nanoce1779_2\|618443:23973..25004 +
jgi.p\|Nanoce1779_2\|618451	polypeptide	jgi.p\|Nanoce1779_2\|618451:28752..29175 +
jgi.p\|Nanoce1779_2\|650232	polypeptide	jgi.p\|Nanoce1779_2\|650232:26340..27005 -
ncniL024	syntenic_region	ncniL024:1119..26314 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications