jgi.p|Nanoce1779_2|618426, mRNA_11394 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|618426
Unique Name	mRNA_11394
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1144
Alignment location	scaffold_156:13359..15032 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	618512
Track	FilteredModels2
ProteinId	618426

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_156	supercontig	scaffold_156:13359..15032 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618426	gene_11394	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618426	mRNA_11394-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11394	CDS_11394	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_156:13359..15032+
coding sequence from alignment at scaffold_156:13359..15032+

mRNA sequence

>mRNA_11394 ID=mRNA_11394|Name=jgi.p|Nanoce1779_2|618426|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp
ACAGGTTTTCAACCATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTG
CTCGCCTCAGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGAC
AGCAGCACAACAAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGG
ATGTGCCGGGAGGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACG
TTTACGGAGATTGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTC
GGTGAAGCCGTCACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAG
GTGACGGGTTTAAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGAT
TATGTGCCTTCGGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGA
GAGCAAGAGGGATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATC
CGAATGATGAGAAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAG
AAGAAGGCGCGTGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCT
CCTCGAGCAGGCTCAGTTGGAAATGCAACGCAAGTACCCAGATGCACGAC
AAGGATGTGGGCTTACCAATACGGTGAACTACTTGACAAAGCACGTACAG
ACCAACCCCCGCGACTACTCCGCCCGCCGCGGCCTCCTGCAAGCGGTGAA
CCTTCGTCGCAAGCTTCTCAACTACGTGTCTAAGAAGAACAAGCCCGGCG
CTATCAAGCTGGCTTCAGAGCTTGGCATTCGTTTTCCGTGCACCGGAGGC
CGCGCGTATCGATTCTATACGAACACCAAGAGCAAGAAAGCGAAGAATAT
GCAGGCCGTGGCTGATGCCAGGGCTGCCGAAGCCGAAGCGGAGGCCAAGG
CGTCGATGAAAGCGTGAGCGACTTAACTATAAGGAAGGGAGGAAGGACGT
GGAAGAGAGGATCTTCCTGTGGGAATGGAGGAGGAGTGGAACTGCTGTCG
ACGGCGACTCTTCTGCAGAATAGCAGCAGCGATTAGCGTTGTGAGAGTGC
TTTAAGCTCTCACACGTACAAAAAAGAAACACACATATATCAATTAAGAA
ACGGTCGGTGAAGAAAAAAGAAGGAATCGAAAAAAGATGAAAAA

protein sequence of jgi.p|Nanoce1779_2|618426

>mRNA_11394-protein ID=mRNA_11394-protein|Name=jgi.p|Nanoce1779_2|618426|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MLLQRGVFLSCLLASAVAFAPSMRARAATAAQQRAVSARVYAAGPDVPGG
LVPEDDEEITETFTEIDGVVFEGDFEDDSVKPSLTSLLEDVGDDGGDGFK
LDSDDSFFSIPDYVPSELPDLAALGSGLESKRDMMNEFSEGGEFDPNDEK
MYRLLGLDALDEKKARVNPEDFTLPGGFLLEQAQLEMQRKYPDARQGCGL
TNTVNYLTKHVQTNPRDYSARRGLLQAVNLRRKLLNYVSKKNKPGAIKLA
SELGIRFPCTGGRAYRFYTNTKSKKAKNMQAVADARAAEAEAEAKASMKA
*

mRNA from alignment at scaffold_156:13359..15032+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11394 ID=mRNA_11394|Name=jgi.p|Nanoce1779_2|618426|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_156:13359..15032+ (Nannochloropsis oceanica)
ACAGGTTTTCAACCATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTG
CTCGCCTCAGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGTAAG
TTGGGCACGCCTGGAGGCGAGGGAGGAGGGAGGGAGAGAGTGTTACAGGA
TGGGTTGGCGGCTGATTGCAGCAGCAGCTGCTGCTGTTGATGAAGATGCC
ACGGCCTTGTGTGGCATTGCCTGCGTCCTGTGTGCAGGACATGTTAACAA
GTCAAAGCATTGAGGCGCGATGCGGTGGAGAAGCTCAGGCTGACGCTGCC
GCGCATAAGTAAGTGGGTCGCTCCTCGTTCCCCGCGATGGATGCGCGTGC
CGCCGATGCCTACTCACACACATTGGCTGCTGGATTCAACAAGGGAATGA
AAGAGGAAAGGAGGAACGAGAGAATGTACAGAAGAGCGGTCTCATGTAGG
CAGGAACTAGGTTTCCAACCCACGCACGCTTTCCTCTCTTTCATATGCGT
GCAACACAAAGATGATAAGCTTCTATCCATCACCATTCACTCCTTCTCTT
TCCCAACCTTCCCCACATTTTCCCGCGATAACAGGCGACAGCAGCACAAC
AAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCGGGA
GGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGAGAT
TGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGCCGT
CACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGGTTT
AAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCCTTC
GGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGAGGG
ATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGATGAG
AAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGCGCG
TGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGCAGG
CTCAGTTGGAAATGCAACGCAAGTACCCAGATGCACGACAAGGATGTGGG
GTCTTCGGCCGTCCAAATTGCGCAGCTTACCAATACGGTGAACTACTTGA
CAAAGCACGTACAGACCAACCCCCGCGACTACTCCGCCCGCCGCGGCCTC
CTGCAAGCGGTGAACCTTCGTCGCAAGCTTCTCAACTACGTGTCTAAGAA
GAACAAGCCCGGCGCTATCAAGCTGGCTTCAGAGCTTGGCATTCGTTTTC
CGTGCACCGGAGGCCGCGCGGTCTAAGTTCGAGAAGTATCGATTCTATAC
GAACACCAAGAGCAAGAAAGCGAAGAATATGCAGGCCGTGGCTGATGCCA
GGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCGATGAAAGCGTGAGCG
ACTTAACTATAAGGAAGGGAGGAAGGACGTGGAAGAGAGGATCTTCCTGT
GGGAATGGAGGAGGAGTGGAACTGCTGTCGACGGCGACTCTTCTGCAGAA
TAGCAGCAGCGATTAGCGTTGTGAGAGTGCTTTAAGCTCTCACACGTACA
AAAAAGAAACACACATATATCAATTAAGAAACGGTCGGTGAAGAAAAAAG
AAGGAATCGAAAAAAGATGAAAAA

Coding sequence (CDS) from alignment at scaffold_156:13359..15032+

>mRNA_11394 ID=mRNA_11394|Name=jgi.p|Nanoce1779_2|618426|organism=Nannochloropsis oceanica|type=CDS|length=3612bp|location=Sequence derived from alignment at scaffold_156:13359..15032+ (Nannochloropsis oceanica)
ATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGCCTCAGCGGT
GGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGACAGCAGCACAACAAA
GGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCGGGAGGT
TTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGAGATTGA
TGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGCCGTCAC
TGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGGTTTAAG
CTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCCTTCGGA
GTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGAGGGATA
TGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGATGAGAAG
ATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGCGCGTGT
CAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGCAGGCTC
AGTTGGAAATGCAACGCAAGTACCCAGATGCACGACAAGGATGTGGGCTT
ACCAATACGGTGAACTACTTGACAAAGCACGTACAGACCAACCCCCGCGA
CTACTCCGCCCGCCGCGGCCTCCTGCAAGCGGTGAACCTTCGTCGCAAGC
TTCTCAACTACGTGTCTAAGAAGAACAAGCCCGGCGCTATCAAGCTGGCT
TCAGAGCTTGGCATTCGTTTTCCGTGCACCGGAGGCCGCGCGTATCGATT
CTATACGAACACCAAGAGCAAGAAAGCGAAGAATATGCAGGCCGTGGCTG
ATGCCAGGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCGATGAAAGCG
TGAATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGCCTCAGC
GGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGACAGCAGCACAAC
AAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCGGGA
GGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGAGAT
TGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGCCGT
CACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGGTTT
AAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCCTTC
GGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGAGGG
ATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGATGAG
AAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGCGCG
TGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGCAGG
CTCAGTTGGAAATGCAACGCAAGTACCCAGATGCACGACAAGGATGTGGG
CTTACCAATACGGTGAACTACTTGACAAAGCACGTACAGACCAACCCCCG
CGACTACTCCGCCCGCCGCGGCCTCCTGCAAGCGGTGAACCTTCGTCGCA
AGCTTCTCAACTACGTGTCTAAGAAGAACAAGCCCGGCGCTATCAAGCTG
GCTTCAGAGCTTGGCATTCGTTTTCCGTGCACCGGAGGCCGCGCGTATCG
ATTCTATACGAACACCAAGAGCAAGAAAGCGAAGAATATGCAGGCCGTGG
CTGATGCCAGGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCGATGAAA
GCGTGAATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGCCTC
AGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGACAGCAGCAC
AACAAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTGCCG
GGAGGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTTTACGGA
GATTGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGAAGC
CGTCACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGACGGG
TTTAAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTATGTGCC
TTCGGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCAAGA
GGGATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAATGAT
GAGAAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAAGGC
GCGTGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCGAGC
AGGCTCAGTTGGAAATGCAACGCAAGTACCCAGATGCACGACAAGGATGT
GGGCTTACCAATACGGTGAACTACTTGACAAAGCACGTACAGACCAACCC
CCGCGACTACTCCGCCCGCCGCGGCCTCCTGCAAGCGGTGAACCTTCGTC
GCAAGCTTCTCAACTACGTGTCTAAGAAGAACAAGCCCGGCGCTATCAAG
CTGGCTTCAGAGCTTGGCATTCGTTTTCCGTGCACCGGAGGCCGCGCGTA
TCGATTCTATACGAACACCAAGAGCAAGAAAGCGAAGAATATGCAGGCCG
TGGCTGATGCCAGGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCGATG
AAAGCGTGAATGCTGTTGCAAAGAGGAGTTTTCCTGAGTTGCCTGCTCGC
CTCAGCGGTGGCTTTTGCGCCGTCCATGCGAGCTCGTGCGGCGACAGCAG
CACAACAAAGGGCAGTCAGCGCGCGCGTGTACGCCGCAGGGCCGGATGTG
CCGGGAGGTTTGGTGCCCGAGGACGACGAGGAGATCACTGAGACGTTTAC
GGAGATTGATGGGGTTGTGTTCGAGGGCGACTTTGAGGATGACTCGGTGA
AGCCGTCACTGACCTCGTTGTTGGAGGACGTTGGTGACGATGGAGGTGAC
GGGTTTAAGCTTGACTCTGATGATAGCTTTTTTTCGATCCCGGATTATGT
GCCTTCGGAGTTACCGGACTTGGCGGCGTTGGGGTCCGGGTTGGAGAGCA
AGAGGGATATGATGAATGAGTTTTCGGAGGGGGGGGAGTTCGATCCGAAT
GATGAGAAGATGTACCGCCTGCTGGGATTGGACGCCTTGGACGAGAAGAA
GGCGCGTGTCAACCCCGAAGACTTCACCCTACCCGGAGGCTTTCTCCTCG
AGCAGGCTCAGTTGGAAATGCAACGCAAGTACCCAGATGCACGACAAGGA
TGTGGGCTTACCAATACGGTGAACTACTTGACAAAGCACGTACAGACCAA
CCCCCGCGACTACTCCGCCCGCCGCGGCCTCCTGCAAGCGGTGAACCTTC
GTCGCAAGCTTCTCAACTACGTGTCTAAGAAGAACAAGCCCGGCGCTATC
AAGCTGGCTTCAGAGCTTGGCATTCGTTTTCCGTGCACCGGAGGCCGCGC
GTATCGATTCTATACGAACACCAAGAGCAAGAAAGCGAAGAATATGCAGG
CCGTGGCTGATGCCAGGGCTGCCGAAGCCGAAGCGGAGGCCAAGGCGTCG
ATGAAAGCGTGA

Synonyms

Publications