jgi.p|Nanoce1779_2|570821, mRNA_11400 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|570821
Unique NamemRNA_11400
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length339
Alignment locationscaffold_156:25976..26314 -

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Properties
Property NameValue
TranscriptId570907
TrackFilteredModels2
ProteinId570821
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:25976..26314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570821gene_11400Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11400CDS_11400Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570821mRNA_11400-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11400 ID=mRNA_11400|Name=jgi.p|Nanoce1779_2|570821|organism=Nannochloropsis oceanica|type=mRNA|length=339bp
ATGGGTGGTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAG
TGGTAGTGGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGC
AGCACTGGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGT
GGAGTGAAGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGC
ACAGGGAAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGG
CGGTAGCAGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGT
AGTGATCGCAAGAAGAAGAACAAGAAGAATAGAGGATAA
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protein sequence of jgi.p|Nanoce1779_2|570821

>mRNA_11400-protein ID=mRNA_11400-protein|Name=jgi.p|Nanoce1779_2|570821|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MGGAIPGMGIRDMGGRSGSGAGRRGRHGAVHAQQHWGRQRQEEEEVEHQG
GVKPGSAAKRRERRKRAQGKSAGVGGGGGKGGEAVAAPTPKPATVSSSGG
SDRKKKNKKNRG*
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mRNA from alignment at scaffold_156:25976..26314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11400 ID=mRNA_11400|Name=jgi.p|Nanoce1779_2|570821|organism=Nannochloropsis oceanica|type=mRNA|length=339bp|location=Sequence derived from alignment at scaffold_156:25976..26314- (Nannochloropsis oceanica)
ATGGGTGGTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAG
TGGTAGTGGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGC
AGCACTGGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGT
GGAGTGAAGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGC
ACAGGGAAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGG
CGGTAGCAGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGT
AGTGATCGCAAGAAGAAGAACAAGAAGAATAGAGGATAA
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Coding sequence (CDS) from alignment at scaffold_156:25976..26314-

>mRNA_11400 ID=mRNA_11400|Name=jgi.p|Nanoce1779_2|570821|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_156:25976..26314- (Nannochloropsis oceanica)
ATGGGTGGTGCAATTCCGGGAATGGGAATTAGGGATATGGGAGGAAGGAG
TGGTAGTGGGGCCGGTCGTCGTGGACGCCATGGCGCGGTTCATGCGCAGC
AGCACTGGGGGAGGCAGAGGCAGGAGGAAGAGGAGGTGGAGCATCAGGGT
GGAGTGAAGCCGGGGTCGGCAGCAAAGCGACGAGAGAGGCGAAAGAGAGC
ACAGGGAAAGTCTGCCGGTGTAGGTGGAGGAGGAGGGAAAGGAGGGGAGG
CGGTAGCAGCACCGACCCCAAAGCCGGCAACGGTCTCTTCGTCTGGTGGT
AGTGATCGCAAGAAGAAGAACAAGAAGAATAGAGGATAA
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Synonyms
Publications