jgi.p|Nanoce1779_2|618408, mRNA_11389 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|618408
Unique Name	mRNA_11389
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1630
Alignment location	scaffold_156:1118..3117 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	618494
Track	FilteredModels2
ProteinId	618408

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_156	supercontig	scaffold_156:1118..3117 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618408	gene_11389	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618408	mRNA_11389-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11389	CDS_11389	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_156:1118..3117+
coding sequence from alignment at scaffold_156:1118..3117+

mRNA sequence

>mRNA_11389 ID=mRNA_11389|Name=jgi.p|Nanoce1779_2|618408|organism=Nannochloropsis oceanica|type=mRNA|length=1630bp
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACATAAACAACATAAACAACGAGAAAAAGAA
GAGAAGAGCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCAGTCG
CACCCCGCGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATCAAAG
TTCATCCTCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACGAGAA
AAGGACACGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCGGGTG
TCAACGGGAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCGTTGA
GACCGGACGCCTTTTCAAGCGACAAGGCCGTGTGTACTTTGAGACTATAA
GGGGGGGTGGCGTGTCCAAGTTTTTTGTCCCCGACTCGGAGCTTCCCATG
ATTTCGGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGAGGA
GGACCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAGGAT
TTTTGAACGAGGAAGCCACCTTTGACGGCCTCTTCCTCATAAACTTGGCA
TGTTTGCTTTGGGTACCCTGGGCAAACGCAAACTTACCTGCTCCTATTCG
CATTACACAGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCA
TCGACGACACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTC
GCGTTATTCAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGT
AGCATCCTCTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCC
CCAGAGAGAGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGAT
GTGGTGCAACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACAT
CCCACCTACATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGC
AGCAATTAGTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCC
TCTGTAGAGGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATAC
CTTGAAGAAGGGCGAGATTACATTGGCCACGACATCGGTAATTACTGTAG
ATGATGCTGTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGG
CGCAAGATCAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTC
TGACATCAATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGT
ATGACGACATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGAT
TGGGGCGAGGACGAGGACTTGATGGCGCCGTGATTGACTGCTAGTCCCCA
ACCTCCCCATTAGCCTCCCTTTGCTCCTTTAGTCACCCCATTAGCCACAA
CATTGGCAGAAACCCGTAGAAACCACCATGTGGATTCGTTCGACGGAAAG
AAAATAGCATAGTAGAGGTCGCAGTAACGCTTTTTGTTGCTTTTTGGTTG
AGCTTTTGGTCAAGCATGGGCCTAAGGTAA

protein sequence of jgi.p|Nanoce1779_2|618408

>mRNA_11389-protein ID=mRNA_11389-protein|Name=jgi.p|Nanoce1779_2|618408|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MISEDHPVFKEELARIEEDRAKKLAQAKHMLELGFLNEEATFDGLFLINL
ACLLWVPWANANLPAPIRITQFRKEELRYRMIGRIDDTLEDLEEGAAIDC
LALFKKSASIPMSSSSCVASSPTSHLKTGCKSQRPRESSDIIVEEDTNEE
DVVQQEGAMSDANQSVDIPPTLQGGAVEGLEDPQQQLVSLSSSASAPETE
ASVEGEVEDLAVQRSSYTLKKGEITLATTSVITVDDAVEGFDSVLPQGKK
RRKINAADLAISTLAIASDINAGLQETGYVREYEYDDIHEVVVDKLYPDP
DWGEDEDLMAP*

mRNA from alignment at scaffold_156:1118..3117+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11389 ID=mRNA_11389|Name=jgi.p|Nanoce1779_2|618408|organism=Nannochloropsis oceanica|type=mRNA|length=2000bp|location=Sequence derived from alignment at scaffold_156:1118..3117+ (Nannochloropsis oceanica)
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACATAAACAACATAAACAACGAGAAAAAGAA
GAGAAGAGCATCAGCAGCAAGGCTTGCCTCCGGGAGCGCAGAGCCAGTCG
CACCCCGCGGAGGAGCACTCGGATCAGCAAGAGCCCCCGCAGAATCAAAG
TTCATCCTCGGAACGGGAGGACTCGCGGCGGCCTACGCGCTCTACGAGAA
AAGGACACGATGATTGGCTAAAGATTCCTGTAGAAGCAACTGTTCGGGTG
TCAACGGGAACCTTGGAGACACTCGATGGGATCGTCTATGTTAGCGTTGA
GACCGGACGTGAGTATAGAGAAGATATGTGTTTTTCCGGCGTCCGTTTTT
TTGGGGGCTAGCGACGATCTCTTGAACTCACAAACGCGCGCACATGCTCT
TTCTCGCCACATAAATACAGGCCTTTTCAAGCGACAAGGCCGTGTGTACT
TTGAGACTATAAGGGGGGGTGGCGTGTCCAAGTTTTTTGTCCCCGACTCG
GAGCTTCCCATGATTTCGGGTATGTATAGATGTAGAGAAACGGATCGAGA
GATAGACAGTACAAAATATTGTCACCTGCGTCATACTCTTGCACAAATCT
ACGTACTAACGCGCACTTACAAACTCAAACACAGAGGATCATCCAGTTTT
CAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCC
AAGCCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTTT
GACGGTTGAACAGAGGGCGGCCAATAACACATTGGAGGTATGCAGGCCTC
TTCCTCATAAACTTGGCATGTTTGCTTTGGGTACCCTGGGCAAACGCAAA
CTTACCTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGAT
ATCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGA
GGTAAGCAATTAAGGGAGGTCTAGTCACCACAAGGCACAAGTAGCAGATT
TTATGAAATGAAAAGACTTATTTCATCGTCCCCTCTTCTTCCTCTCCGAA
CAGCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCC
ATGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGAC
GGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGG
AAGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGAC
GCTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGA
GGGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCA
GCGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCG
GTTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCAC
GACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCC
TGCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATC
AGCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGG
CTACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACA
AGTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCG
TGATTGACTGCTAGTCCCCAACCTCCCCATTAGCCTCCCTTTGCTCCTTT
AGTCACCCCATTAGCCACAACATTGGCAGAAACCCGTAGAAACCACCATG
TGGATTCGTTCGACGGAAAGAAAATAGCATAGTAGAGGTCGCAGTAACGC
TTTTTGTTGCTTTTTGGTTGAGCTTTTGGTCAAGCATGGGCCTAAGGTAA

Coding sequence (CDS) from alignment at scaffold_156:1118..3117+

>mRNA_11389 ID=mRNA_11389|Name=jgi.p|Nanoce1779_2|618408|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_156:1118..3117+ (Nannochloropsis oceanica)
ATGATTTCGGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGA
GGAGGACCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAG
GATTTTTGAACGAGGAAGCCACCTTTGACGGCCTCTTCCTCATAAACTTG
GCATGTTTGCTTTGGGTACCCTGGGCAAACGCAAACTTACCTGCTCCTAT
TCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCC
GCATCGACGACACACTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGC
CTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTG
CGTAGCATCCTCTCCCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGC
GCCCCAGAGAGAGCTCTGATATCATTGTGGAGGAAGATACAAACGAGGAG
GATGTGGTGCAACAGGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGA
CATCCCACCTACATTACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGC
AGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAA
GCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTA
TACCTTGAAGAAGGGCGAGATTACATTGGCCACGACATCGGTAATTACTG
TAGATGATGCTGTCGAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAG
CGGCGCAAGATCAACGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGC
CTCTGACATCAATGCGGGACTGCAAGAAACGGGCTACGTACGGGAGTACG
AGTATGACGACATACACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCG
GATTGGGGCGAGGACGAGGACTTGATGGCGCCGTGAATGATTTCGGAGGA
TCATCCAGTTTTCAAGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGA
AGAAGCTGGCCCAAGCCAAGCACATGTTAGAACTAGGATTTTTGAACGAG
GAAGCCACCTTTGACGGCCTCTTCCTCATAAACTTGGCATGTTTGCTTTG
GGTACCCTGGGCAAACGCAAACTTACCTGCTCCTATTCGCATTACACAGT
TTCGCAAGGAAGAGCTGCGATATCGCATGATAGGCCGCATCGACGACACA
CTAGAGGATCTGGAGGAAGGAGCTGCCATCGATTGCCTCGCGTTATTCAA
AAAAAGTGCGTCGATTCCCATGTCCTCTTCGTCCTGCGTAGCATCCTCTC
CCACTTCCCACCTCAAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGC
TCTGATATCATTGTGGAGGAAGATACAAACGAGGAGGATGTGGTGCAACA
GGAAGGGGCCATGTCGGACGCTAATCAAAGCGTGGACATCCCACCTACAT
TACAAGGGGGCGCAGTGGAGGGATTGGAGGACCCGCAGCAGCAATTAGTG
TCCTTGTCATCCAGCGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGG
CGAGGTGGAAGATCTGGCGGTTCAGCGCAGTAGCTATACCTTGAAGAAGG
GCGAGATTACATTGGCCACGACATCGGTAATTACTGTAGATGATGCTGTC
GAGGGATTTGATTCTGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAA
CGCAGCGGACCTAGCCATCAGCACGCTCGCCATTGCCTCTGACATCAATG
CGGGACTGCAAGAAACGGGCTACGTACGGGAGTACGAGTATGACGACATA
CACGAAGTAGTCGTGGACAAGTTGTACCCTGACCCGGATTGGGGCGAGGA
CGAGGACTTGATGGCGCCGTGAATGATTTCGGAGGATCATCCAGTTTTCA
AGGAGGAGTTGGCGCGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCCAA
GCCAAGCACATGTTAGAACTAGGATTTTTGAACGAGGAAGCCACCTTTGA
CGGCCTCTTCCTCATAAACTTGGCATGTTTGCTTTGGGTACCCTGGGCAA
ACGCAAACTTACCTGCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAG
CTGCGATATCGCATGATAGGCCGCATCGACGACACACTAGAGGATCTGGA
GGAAGGAGCTGCCATCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGA
TTCCCATGTCCTCTTCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTC
AAGACGGGTTGCAAAAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGT
GGAGGAAGATACAAACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGT
CGGACGCTAATCAAAGCGTGGACATCCCACCTACATTACAAGGGGGCGCA
GTGGAGGGATTGGAGGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAG
CGCCAGCGCGCCTGAGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATC
TGGCGGTTCAGCGCAGTAGCTATACCTTGAAGAAGGGCGAGATTACATTG
GCCACGACATCGGTAATTACTGTAGATGATGCTGTCGAGGGATTTGATTC
TGTCCTGCCGCAGGGCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAG
CCATCAGCACGCTCGCCATTGCCTCTGACATCAATGCGGGACTGCAAGAA
ACGGGCTACGTACGGGAGTACGAGTATGACGACATACACGAAGTAGTCGT
GGACAAGTTGTACCCTGACCCGGATTGGGGCGAGGACGAGGACTTGATGG
CGCCGTGAATGATTTCGGAGGATCATCCAGTTTTCAAGGAGGAGTTGGCG
CGCATCGAGGAGGACCGGGCGAAGAAGCTGGCCCAAGCCAAGCACATGTT
AGAACTAGGATTTTTGAACGAGGAAGCCACCTTTGACGGCCTCTTCCTCA
TAAACTTGGCATGTTTGCTTTGGGTACCCTGGGCAAACGCAAACTTACCT
GCTCCTATTCGCATTACACAGTTTCGCAAGGAAGAGCTGCGATATCGCAT
GATAGGCCGCATCGACGACACACTAGAGGATCTGGAGGAAGGAGCTGCCA
TCGATTGCCTCGCGTTATTCAAAAAAAGTGCGTCGATTCCCATGTCCTCT
TCGTCCTGCGTAGCATCCTCTCCCACTTCCCACCTCAAGACGGGTTGCAA
AAGCCAGCGCCCCAGAGAGAGCTCTGATATCATTGTGGAGGAAGATACAA
ACGAGGAGGATGTGGTGCAACAGGAAGGGGCCATGTCGGACGCTAATCAA
AGCGTGGACATCCCACCTACATTACAAGGGGGCGCAGTGGAGGGATTGGA
GGACCCGCAGCAGCAATTAGTGTCCTTGTCATCCAGCGCCAGCGCGCCTG
AGACCGAAGCCTCTGTAGAGGGCGAGGTGGAAGATCTGGCGGTTCAGCGC
AGTAGCTATACCTTGAAGAAGGGCGAGATTACATTGGCCACGACATCGGT
AATTACTGTAGATGATGCTGTCGAGGGATTTGATTCTGTCCTGCCGCAGG
GCAAGAAGCGGCGCAAGATCAACGCAGCGGACCTAGCCATCAGCACGCTC
GCCATTGCCTCTGACATCAATGCGGGACTGCAAGAAACGGGCTACGTACG
GGAGTACGAGTATGACGACATACACGAAGTAGTCGTGGACAAGTTGTACC
CTGACCCGGATTGGGGCGAGGACGAGGACTTGATGGCGCCGTGA

Synonyms

Publications