jgi.p|Nanoce1779_2|618451, mRNA_11402 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618451
Unique NamemRNA_11402
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length408
Alignment locationscaffold_156:28717..29227 +

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Properties
Property NameValue
TranscriptId618537
TrackFilteredModels2
ProteinId618451
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:28717..29227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618451gene_11402Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618451mRNA_11402-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11402CDS_11402Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11402 ID=mRNA_11402|Name=jgi.p|Nanoce1779_2|618451|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
TTCTGGACTTAAACGAGGAACGTTTGTCAAACAAGATGAACGAGTACTGT
GCATTGTTGGGCACAAAAGCAAACCCAGAGGATCCGTCTGCCTGCAAATC
TTATCTTTGCATTGATGGCGTCAATGTAAGGGTTTGCTACCCTACCAGGT
ACCAGGAACGGTACTACAATGGGGCCTACAAATACCATGGGATAAAATTC
CAAGGGATGGTATCACCAGTGGGAATCGTTGAATCGTGTTATGGTCCTCT
TCCTAGTGTGCGCAATGACGCTGCGATGTGGGACATCGCCCGTGACTTCA
GTGCGATGACCCGCATCAATGAACGTGTTGGGAGAGTATGCACAGTGTCC
GAGTAGCGCGCTAAGACGAGTTGGTAAGCAAGTCCGTATGCTAGTTCCTT
TGCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|618451

>mRNA_11402-protein ID=mRNA_11402-protein|Name=jgi.p|Nanoce1779_2|618451|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MNEYCALLGTKANPEDPSACKSYLCIDGVNVRVCYPTRYQERYYNGAYKY
HGIKFQGMVSPVGIVESCYGPLPSVRNDAAMWDIARDFSAMTRINERVGR
VCTVSE*
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mRNA from alignment at scaffold_156:28717..29227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11402 ID=mRNA_11402|Name=jgi.p|Nanoce1779_2|618451|organism=Nannochloropsis oceanica|type=mRNA|length=511bp|location=Sequence derived from alignment at scaffold_156:28717..29227+ (Nannochloropsis oceanica)
TTCTGGACTTAAACGAGGAACGTTTGTCAAACAAGATGAACGAGTACTGT
GCATTGTTGGGCACAAAAGCAAACCCAGAGGATCCGTCTGCCTGCAAATC
TTATCTTTGCATTGATGGCGTCAATGTGTAAGTCCCCGTCGCCCTTGTTA
TTCCTTGTCTTGCTTCTCCACGAGCCACTTTGGACTACCCCCCTCACCCT
CAACCACACATTAACTGTCTTCACCTGTAGAAGGGTTTGCTACCCTACCA
GGTACCAGGAACGGTACTACAATGGGGCCTACAAATACCATGGGATAAAA
TTCCAAGGGATGGTATCACCAGTGGGAATCGTTGAATCGTGTTATGGTCC
TCTTCCTAGTGTGCGCAATGACGCTGCGATGTGGGACATCGCCCGTGACT
TCAGTGCGATGACCCGCATCAATGAACGTGTTGGGAGAGTATGCACAGTG
TCCGAGTAGCGCGCTAAGACGAGTTGGTAAGCAAGTCCGTATGCTAGTTC
CTTTGCCTCCT
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Coding sequence (CDS) from alignment at scaffold_156:28717..29227+

>mRNA_11402 ID=mRNA_11402|Name=jgi.p|Nanoce1779_2|618451|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_156:28717..29227+ (Nannochloropsis oceanica)
ATGAACGAGTACTGTGCATTGTTGGGCACAAAAGCAAACCCAGAGGATCC
GTCTGCCTGCAAATCTTATCTTTGCATTGATGGCGTCAATGTAAGGGTTT
GCTACCCTACCAGGTACCAGGAACGGTACTACAATGGGGCCTACAAATAC
CATGGGATAAAATTCCAAGGGATGGTATCACCAGTGGGAATCGTTGAATC
GTGTTATGGTCCTCTTCCTAGTGTGCGCAATGACGCTGCGATGTGGGACA
TCGCCCGTGACTTCAGTGCGATGACCCGCATCAATGAACGTGTTGGGAGA
GTATGCACAGTGTCCGAGTAGATGAACGAGTACTGTGCATTGTTGGGCAC
AAAAGCAAACCCAGAGGATCCGTCTGCCTGCAAATCTTATCTTTGCATTG
ATGGCGTCAATGTAAGGGTTTGCTACCCTACCAGGTACCAGGAACGGTAC
TACAATGGGGCCTACAAATACCATGGGATAAAATTCCAAGGGATGGTATC
ACCAGTGGGAATCGTTGAATCGTGTTATGGTCCTCTTCCTAGTGTGCGCA
ATGACGCTGCGATGTGGGACATCGCCCGTGACTTCAGTGCGATGACCCGC
ATCAATGAACGTGTTGGGAGAGTATGCACAGTGTCCGAGTAG
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Synonyms
Publications