jgi.p|Nanoce1779_2|618412, mRNA_11390 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|618412
Unique Name	mRNA_11390
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1134
Alignment location	scaffold_156:3195..4684 +

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Properties


Property Name	Value
TranscriptId	618498
Track	FilteredModels2
ProteinId	618412

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_156	supercontig	scaffold_156:3195..4684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618412	gene_11390	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|618412	mRNA_11390-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11390	CDS_11390	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_156:3195..4684+
coding sequence from alignment at scaffold_156:3195..4684+

mRNA sequence

>mRNA_11390 ID=mRNA_11390|Name=jgi.p|Nanoce1779_2|618412|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ACAGACACATACTTCCTCTTCCGTGTCTTGGTATCATCATAGCCACCCAC
GGCGCTGCCATGCCCTCTGAGTTTTATCGCGGGGCGTCCAGACATAATGC
AGCCACCCTTGTCCTCTTCCTCCTACTCCTGCTCCTGCACTCCTTGGCCT
CCTATAGCGCATTTATCCCTGAGTCTTCTGTCCGCATTGGTAAGGCTTTC
AATAGGATTATAATTCCTTCTAGTCGTGCAGTTCCCAGAGCTGGCGAGGA
TGCTGCCATCGATGTGCCCGCGACTCTGTATGTTGAGGACCCGCCCATCT
GGCCTGTGCCAGCCTCGCTTCGACGTGCGGAATCCTTAGGGGGGGGCGAA
CCCAGCTATATTAGGTTCTTGGGCTTGGCGAAAGTCTTTGAAGCGCGGGA
TGGGGCCAAGTTAGCTGAGCTGTTTGATACTGACAGTTTGTTTAGGCATG
CCATCCGAGTAGCAATGCGCGATGACTTATTTGTTCCAGACCCCACTCGT
TCAGAGAAGGTAAATCATTTCCTGAAAGACCTTGGCTCCTCCTTGCACGT
CAGCTGGGAAAAATCGCCCACCCAATACGCCAATCTGTCCCGGGTCTTCA
AAGAATATGGCATTCAGGGGTTGGACGGAGTAACCTTTATCAAGTCTCTT
GGTGCCTTGGCGGGTGGTGGCCAGCAATGCGAAGACGCAGACGGATTTCT
ACTCCGTGAGCAACGCTTTGGAAGTTTGATTGATATTGTGACTGCTGGGA
ACCGCCTCAAGCCCGCTCATTCGTGGCACCAGGACTGCAACCTGCCTCAG
ACAACGGTTATGTTGGGTTTTCCCAAGAGTAATGAGTACAAGGGCGCGGG
CGTCTTTTCCCACGCCATCAAGATATCTCACCAAATAAGGGATCAGGTAC
CAGGGGGCGGGGCGGTTGTCCAATACGATGAGTTCGAAGGAGTTGGACAG
AGCGACGACCTGCCGAACCCTTTGCCAGAATCCGTTATTCTGCGACCCTG
GTACGCGAAAGGTCGCGAAATTATGGTTTATGATGACAGTTGGCACATTC
ACTCGGCGCCAGACCATATCCATCGGGCGTCGATTTGGCGCTTTATGTGA
TTTGTAAAATGGAAGGAATAGCGGAAGGATTTAA

protein sequence of jgi.p|Nanoce1779_2|618412

>mRNA_11390-protein ID=mRNA_11390-protein|Name=jgi.p|Nanoce1779_2|618412|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MPSEFYRGASRHNAATLVLFLLLLLLHSLASYSAFIPESSVRIGKAFNRI
IIPSSRAVPRAGEDAAIDVPATLYVEDPPIWPVPASLRRAESLGGGEPSY
IRFLGLAKVFEARDGAKLAELFDTDSLFRHAIRVAMRDDLFVPDPTRSEK
VNHFLKDLGSSLHVSWEKSPTQYANLSRVFKEYGIQGLDGVTFIKSLGAL
AGGGQQCEDADGFLLREQRFGSLIDIVTAGNRLKPAHSWHQDCNLPQTTV
MLGFPKSNEYKGAGVFSHAIKISHQIRDQVPGGGAVVQYDEFEGVGQSDD
LPNPLPESVILRPWYAKGREIMVYDDSWHIHSAPDHIHRASIWRFM*

mRNA from alignment at scaffold_156:3195..4684+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11390 ID=mRNA_11390|Name=jgi.p|Nanoce1779_2|618412|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp|location=Sequence derived from alignment at scaffold_156:3195..4684+ (Nannochloropsis oceanica)
ACAGACACATACTTCCTCTTCCGTGTCTTGGTATCATCATAGCCACCCAC
GGCGCTGCCATGCCCTCTGAGTTTTATCGCGGGGCGTCCAGACATAATGC
AGCCACCCTTGTCCTCTTCCTCCTACTCCTGCTCCTGCACTCCTTGGCCT
CCTATAGCGCATTTATCCCTGAGTCTTCTGTCCGCATTGGTAAGGCTTTC
AATAGGATTATAATTCCTTCTAGTCGTGCAGTTCCCAGAGCTGGCGAGGA
TGCTGCCATCGATGTGCCCGCGACTCTGTATGTTGAGGACCCGCCCATCT
GGCCTGTGCCAGCCTCGCTTCGACGTGCGGAATCCTTAGGGGGGGGCGAA
CCCAGCTATATTAGGTTCTTGGGCTTGGCGAAAGTCTTTGAAGCGCGGGA
TGGGGCCAAGTTAGCTGAGCTGTTTGATACTGACAGTTTGTTTAGGTGCG
TGGCATTCTTTGCTTCCCTTCCCATCCCTTCCTTCCTCCTATGTCCCCCC
TAACCATTTATATTTTTTTTCCTCAGGCATGCCATCCGAGTAGCAATGCG
CGATGACTTATTTGTTCCAGACCCCACTCGTTCAGAGAAGGTAAATCATT
TCCTGAAAGACCTTGGCTCCTCCTTGCACGTCAGCTGGGAAAAATCGCCC
ACCCAATACGCCAATCTGTCCCGGTAAGTTCCAGATGAGCGAAATTTAAG
TGAATTCGTACAGTGTGCCGACGTATTCAGCGTTGGTTAGTCCCTTTTCT
AACTTCTCTTTTTTCAGGTCGACTCGAATGGGAGCCCCCGTCCGGCGCAG
ATATACACGTATCCACGCTATCTTTCTTGCGCCATCCTTCTCCTTTCCAC
CCACCCTCCCTCCCTCCCTCTCCCCCTTCTTTCGCAATGGATACAATCGA
TGTTATACTTATGAAAGATATGCATGAAAACCTACCAAAAAATACAAGGG
TCTTCAAAGAATATGGCATTCAGGGGTTGGACGGAGTAACCTTTATCAAG
TCTCTTGGTGCCTTGGCGGGTGGTGGCCAGCAATGCGAAGACGCAGACGG
ATTTCTACTCCGTGAGCAACGCTTTGGAAGTTTGATTGATATTGTGACTG
CTGGGAACCGCCTCAAGCCCGCTCATTCGTGGCACCAGGACTGCAACCTG
CCTCAGACAACGGTTATGTTGGGTTTTCCCAAGAGTAATGAGTACAAGGG
CGCGGGCGTCTTTTCCCACGCCATCAAGATATCTCACCAAATAAGGGATC
AGGTACCAGGGGGCGGGGCGGTTGTCCAATACGATGAGTTCGAAGGAGTT
GGACAGAGCGACGACCTGCCGAACCCTTTGCCAGAATCCGTTATTCTGCG
ACCCTGGTACGCGAAAGGTCGCGAAATTATGGTTTATGATGACAGTTGGC
ACATTCACTCGGCGCCAGACCATATCCATCGGGCGTCGATTTGGCGCTTT
ATGTGATTTGTAAAATGGAAGGAATAGCGGAAGGATTTAA

Coding sequence (CDS) from alignment at scaffold_156:3195..4684+

>mRNA_11390 ID=mRNA_11390|Name=jgi.p|Nanoce1779_2|618412|organism=Nannochloropsis oceanica|type=CDS|length=3123bp|location=Sequence derived from alignment at scaffold_156:3195..4684+ (Nannochloropsis oceanica)
ATGCCCTCTGAGTTTTATCGCGGGGCGTCCAGACATAATGCAGCCACCCT
TGTCCTCTTCCTCCTACTCCTGCTCCTGCACTCCTTGGCCTCCTATAGCG
CATTTATCCCTGAGTCTTCTGTCCGCATTGGTAAGGCTTTCAATAGGATT
ATAATTCCTTCTAGTCGTGCAGTTCCCAGAGCTGGCGAGGATGCTGCCAT
CGATGTGCCCGCGACTCTGTATGTTGAGGACCCGCCCATCTGGCCTGTGC
CAGCCTCGCTTCGACGTGCGGAATCCTTAGGGGGGGGCGAACCCAGCTAT
ATTAGGTTCTTGGGCTTGGCGAAAGTCTTTGAAGCGCGGGATGGGGCCAA
GTTAGCTGAGCTGTTTGATACTGACAGTTTGTTTAGGCATGCCATCCGAG
TAGCAATGCGCGATGACTTATTTGTTCCAGACCCCACTCGTTCAGAGAAG
GTAAATCATTTCCTGAAAGACCTTGGCTCCTCCTTGCACGTCAGCTGGGA
AAAATCGCCCACCCAATACGCCAATCTGTCCCGGGTCTTCAAAGAATATG
GCATTCAGGGGTTGGACGGAGTAACCTTTATCAAGTCTCTTGGTGCCTTG
GCGGGTGGTGGCCAGCAATGCGAAGACGCAGACGGATTTCTACTCCGTGA
GCAACGCTTTGGAAGTTTGATTGATATTGTGACTGCTGGGAACCGCCTCA
AGCCCGCTCATTCGTGGCACCAGGACTGCAACCTGCCTCAGACAACGGTT
ATGTTGGGTTTTCCCAAGAGTAATGAGTACAAGGGCGCGGGCGTCTTTTC
CCACGCCATCAAGATATCTCACCAAATAAGGGATCAGGTACCAGGGGGCG
GGGCGGTTGTCCAATACGATGAGTTCGAAGGAGTTGGACAGAGCGACGAC
CTGCCGAACCCTTTGCCAGAATCCGTTATTCTGCGACCCTGGTACGCGAA
AGGTCGCGAAATTATGGTTTATGATGACAGTTGGCACATTCACTCGGCGC
CAGACCATATCCATCGGGCGTCGATTTGGCGCTTTATGTGAATGCCCTCT
GAGTTTTATCGCGGGGCGTCCAGACATAATGCAGCCACCCTTGTCCTCTT
CCTCCTACTCCTGCTCCTGCACTCCTTGGCCTCCTATAGCGCATTTATCC
CTGAGTCTTCTGTCCGCATTGGTAAGGCTTTCAATAGGATTATAATTCCT
TCTAGTCGTGCAGTTCCCAGAGCTGGCGAGGATGCTGCCATCGATGTGCC
CGCGACTCTGTATGTTGAGGACCCGCCCATCTGGCCTGTGCCAGCCTCGC
TTCGACGTGCGGAATCCTTAGGGGGGGGCGAACCCAGCTATATTAGGTTC
TTGGGCTTGGCGAAAGTCTTTGAAGCGCGGGATGGGGCCAAGTTAGCTGA
GCTGTTTGATACTGACAGTTTGTTTAGGCATGCCATCCGAGTAGCAATGC
GCGATGACTTATTTGTTCCAGACCCCACTCGTTCAGAGAAGGTAAATCAT
TTCCTGAAAGACCTTGGCTCCTCCTTGCACGTCAGCTGGGAAAAATCGCC
CACCCAATACGCCAATCTGTCCCGGGTCTTCAAAGAATATGGCATTCAGG
GGTTGGACGGAGTAACCTTTATCAAGTCTCTTGGTGCCTTGGCGGGTGGT
GGCCAGCAATGCGAAGACGCAGACGGATTTCTACTCCGTGAGCAACGCTT
TGGAAGTTTGATTGATATTGTGACTGCTGGGAACCGCCTCAAGCCCGCTC
ATTCGTGGCACCAGGACTGCAACCTGCCTCAGACAACGGTTATGTTGGGT
TTTCCCAAGAGTAATGAGTACAAGGGCGCGGGCGTCTTTTCCCACGCCAT
CAAGATATCTCACCAAATAAGGGATCAGGTACCAGGGGGCGGGGCGGTTG
TCCAATACGATGAGTTCGAAGGAGTTGGACAGAGCGACGACCTGCCGAAC
CCTTTGCCAGAATCCGTTATTCTGCGACCCTGGTACGCGAAAGGTCGCGA
AATTATGGTTTATGATGACAGTTGGCACATTCACTCGGCGCCAGACCATA
TCCATCGGGCGTCGATTTGGCGCTTTATGTGAATGCCCTCTGAGTTTTAT
CGCGGGGCGTCCAGACATAATGCAGCCACCCTTGTCCTCTTCCTCCTACT
CCTGCTCCTGCACTCCTTGGCCTCCTATAGCGCATTTATCCCTGAGTCTT
CTGTCCGCATTGGTAAGGCTTTCAATAGGATTATAATTCCTTCTAGTCGT
GCAGTTCCCAGAGCTGGCGAGGATGCTGCCATCGATGTGCCCGCGACTCT
GTATGTTGAGGACCCGCCCATCTGGCCTGTGCCAGCCTCGCTTCGACGTG
CGGAATCCTTAGGGGGGGGCGAACCCAGCTATATTAGGTTCTTGGGCTTG
GCGAAAGTCTTTGAAGCGCGGGATGGGGCCAAGTTAGCTGAGCTGTTTGA
TACTGACAGTTTGTTTAGGCATGCCATCCGAGTAGCAATGCGCGATGACT
TATTTGTTCCAGACCCCACTCGTTCAGAGAAGGTAAATCATTTCCTGAAA
GACCTTGGCTCCTCCTTGCACGTCAGCTGGGAAAAATCGCCCACCCAATA
CGCCAATCTGTCCCGGGTCTTCAAAGAATATGGCATTCAGGGGTTGGACG
GAGTAACCTTTATCAAGTCTCTTGGTGCCTTGGCGGGTGGTGGCCAGCAA
TGCGAAGACGCAGACGGATTTCTACTCCGTGAGCAACGCTTTGGAAGTTT
GATTGATATTGTGACTGCTGGGAACCGCCTCAAGCCCGCTCATTCGTGGC
ACCAGGACTGCAACCTGCCTCAGACAACGGTTATGTTGGGTTTTCCCAAG
AGTAATGAGTACAAGGGCGCGGGCGTCTTTTCCCACGCCATCAAGATATC
TCACCAAATAAGGGATCAGGTACCAGGGGGCGGGGCGGTTGTCCAATACG
ATGAGTTCGAAGGAGTTGGACAGAGCGACGACCTGCCGAACCCTTTGCCA
GAATCCGTTATTCTGCGACCCTGGTACGCGAAAGGTCGCGAAATTATGGT
TTATGATGACAGTTGGCACATTCACTCGGCGCCAGACCATATCCATCGGG
CGTCGATTTGGCGCTTTATGTGA

Synonyms

Publications