jgi.p|Nanoce1779_2|98412, mRNA_11399 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|98412
Unique NamemRNA_11399
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length815
Alignment locationscaffold_156:25501..26315 +

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Properties
Property NameValue
TranscriptId98498
TrackFilteredModels2
ProteinId98412
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:25501..26315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|98412gene_11399Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|98412mRNA_11399-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11399CDS_11399Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11399 ID=mRNA_11399|Name=jgi.p|Nanoce1779_2|98412|organism=Nannochloropsis oceanica|type=mRNA|length=815bp
TTGTCTATTTATCTATTATTTCATTGGTTGCTCGAAGAAAGACTCACCAC
GCACGCACAAAGGCATCGGTGCTTTCGACTACATCCAAGTTGTCTATTTA
TCTATTATTTCATTGATTGCTCGCGGGCTGGGTTATGTGTCAGCAGCACC
AACATGCACCCTATCAACTCTCCCACGGCACAGACATGTAACCTGCTATC
TCAACTCCTTCTCTCTTTCTCCGGTATGCGCATCCTCATTTTCCCAACTT
TTCCCTGTTATAGTTTACCCCCTATTTCTTTTGTCCTCACATTCACCCCT
CTCAGTATGTACTTGGGCATCCTTTACGCCCTCGCCGTTTTCTTTTCCCT
CTCTCCAATGAAGATGGGGACAGACACGTGCGCGGCTGACGTAAAGAGGG
CAAGATTCCTCTCCTCCTCTATCTAGACACACATCCCCTCATTTCCGTCC
CCTCGTCTTTATCAACACCACCACTTTATCCTCTATTCTTCTTGTTCTTC
TTCTTGCGATCACTACCACCAGACGAAGAGACCGTTGCCGGCTTTGGGGT
CGGTGCTGCTACCGCCTCCCCTCCTTTCCCTCCTCCTCCACCTACACCGG
CAGACTTTCCCTGTGCTCTCTTTCGCCTCTCTCGTCGCTTTGCTGCCGAC
CCCGGCTTCACTCCACCCTGATGCTCCACCTCCTCTTCCTCCTGCCTCTG
CCTCCCCCAGTGCTGCTGCGCATGAACCGCGCCATGGCGTCCACGACGAC
CGGCCCCACTACCACTCCTTCCTCCCATATCCCTAATTCCCATTCCCGGA
ATTGCACCACCCATC
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protein sequence of jgi.p|Nanoce1779_2|98412

>mRNA_11399-protein ID=mRNA_11399-protein|Name=jgi.p|Nanoce1779_2|98412|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
LSIYLLFHWLLEERLTTHAQRHRCFRLHPSCLFIYYFIDCSRAGLCVSST
NMHPINSPTAQTCNLLSQLLLSFSGMRILIFPTFPCYSLPPISFVLTFTP
LSMYLGILYALAVFFSLSPMKMGTDTCAADVKRARFLSSSI*
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mRNA from alignment at scaffold_156:25501..26315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11399 ID=mRNA_11399|Name=jgi.p|Nanoce1779_2|98412|organism=Nannochloropsis oceanica|type=mRNA|length=815bp|location=Sequence derived from alignment at scaffold_156:25501..26315+ (Nannochloropsis oceanica)
TTGTCTATTTATCTATTATTTCATTGGTTGCTCGAAGAAAGACTCACCAC
GCACGCACAAAGGCATCGGTGCTTTCGACTACATCCAAGTTGTCTATTTA
TCTATTATTTCATTGATTGCTCGCGGGCTGGGTTATGTGTCAGCAGCACC
AACATGCACCCTATCAACTCTCCCACGGCACAGACATGTAACCTGCTATC
TCAACTCCTTCTCTCTTTCTCCGGTATGCGCATCCTCATTTTCCCAACTT
TTCCCTGTTATAGTTTACCCCCTATTTCTTTTGTCCTCACATTCACCCCT
CTCAGTATGTACTTGGGCATCCTTTACGCCCTCGCCGTTTTCTTTTCCCT
CTCTCCAATGAAGATGGGGACAGACACGTGCGCGGCTGACGTAAAGAGGG
CAAGATTCCTCTCCTCCTCTATCTAGACACACATCCCCTCATTTCCGTCC
CCTCGTCTTTATCAACACCACCACTTTATCCTCTATTCTTCTTGTTCTTC
TTCTTGCGATCACTACCACCAGACGAAGAGACCGTTGCCGGCTTTGGGGT
CGGTGCTGCTACCGCCTCCCCTCCTTTCCCTCCTCCTCCACCTACACCGG
CAGACTTTCCCTGTGCTCTCTTTCGCCTCTCTCGTCGCTTTGCTGCCGAC
CCCGGCTTCACTCCACCCTGATGCTCCACCTCCTCTTCCTCCTGCCTCTG
CCTCCCCCAGTGCTGCTGCGCATGAACCGCGCCATGGCGTCCACGACGAC
CGGCCCCACTACCACTCCTTCCTCCCATATCCCTAATTCCCATTCCCGGA
ATTGCACCACCCATC
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Coding sequence (CDS) from alignment at scaffold_156:25501..26315+

>mRNA_11399 ID=mRNA_11399|Name=jgi.p|Nanoce1779_2|98412|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_156:25501..26315+ (Nannochloropsis oceanica)
TTGTCTATTTATCTATTATTTCATTGGTTGCTCGAAGAAAGACTCACCAC
GCACGCACAAAGGCATCGGTGCTTTCGACTACATCCAAGTTGTCTATTTA
TCTATTATTTCATTGATTGCTCGCGGGCTGGGTTATGTGTCAGCAGCACC
AACATGCACCCTATCAACTCTCCCACGGCACAGACATGTAACCTGCTATC
TCAACTCCTTCTCTCTTTCTCCGGTATGCGCATCCTCATTTTCCCAACTT
TTCCCTGTTATAGTTTACCCCCTATTTCTTTTGTCCTCACATTCACCCCT
CTCAGTATGTACTTGGGCATCCTTTACGCCCTCGCCGTTTTCTTTTCCCT
CTCTCCAATGAAGATGGGGACAGACACGTGCGCGGCTGACGTAAAGAGGG
CAAGATTCCTCTCCTCCTCTATCTAG
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Synonyms
Publications