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Properties
| Property Name | Value |
|---|
| TranscriptId | 548541 |
| Track | FilteredModels2 |
| ProteinId | 548455 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_156 | supercontig | scaffold_156:8370..11738 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11392 ID=mRNA_11392|Name=jgi.p|Nanoce1779_2|548455|organism=Nannochloropsis oceanica|type=mRNA|length=2746bp
AGTGGGGGAGGGGTACATAGGCGGGCTGTATGATCACTTGCATGATTTTT
TGGGGAGACATTGCGAGGTGGTGGTGGGGCGGTTGCAGGTGGCGGCGGAG
AGTCACACGGCCTTTCAATTTTTGGGGTTGTATGCGGACTTGTACCGGCT
GTATACGGAGGGGATGGCGACGGGTGGGAAGCTTCTTGCCTACCTTGATC
GGTTTTGGATCACCAAGCACCATCATAAGAAAGGGGTTGATCCCTGCCAG
GGCGTTATGTTTATCTCGGAGCTTGTCCCACTAATTTGGCGGCAACGTGT
GTTGAGGCGAAATATTTCTGTCTTGCTTCAACGTGCGTTCAATGCTGTAG
TTGCTGACTTGCGCGAAGACCCTGCCGGACCTTCCCCTGAATACCTCGAA
GTTCTTCGGCGTGTGGTGGCTTCCTTCGTAGACCTGGGCACAACGCTCGA
GCCTCTTCATCCTGTAGGTTTCTACAAGCAGCAGCTGGAGGACCATTTGC
TGAAGGAAGTGTATTTGCACTACGTTGAGAGGGCGGGGGCGTTTGCGGCC
CATGTCTCGGCGGGAAAGGTGGATGAGACAGCTGTTGCGGAGTACATTCG
TGGTGTCCAACGGTGTGTGCAAGTGGAGGAGGCGATTTGGGAGCCTGTGA
ACCCATCGACGGTCGCGAGGGGCGGTGAGGGTGGTGAGGAAAAGTATGTT
AGAGAGTGAGCCGCATCATCAGATTCTGATGGCTTTCGCGCAGGCGGCGC
TGGCTTTTCGGGCGGAGCGATTGGCGGATTTGGAGTTGCTGTATCGCCTG
TTGGACAATGACGATGTGGACCCGAGTAAGGGGATCGAGGCTTTAAGGGA
GATCTTTTTTGGGTTTGTCAAGGAGGTGGGGGCGAGGGAGGTGAAGAGGG
CGAATGAGGAGGGGCGGCATCGACAGGCGTCACCCATACGTCCCGATATG
AGCCATATGCTGGCTCGGTCGAGCTTACCGGCCGACTACGTGTGTTCGGA
TGCGATTCAGATGATGCTTGATCTCTATTCCCATTATCTCACCCTGGTTC
GTGTCACCTTTCAGGATGACGCTCGTTTCTCCAAGGCCTTCAAGAAGGCG
TGTGAGCATTTCATTAATGCTCTGCCTAACATGTCGGAGTCTTTGGCGAT
TCACGCCCACTATTTTCTGGACAAGAATTGTCCGGAGTCACGAGGAACGG
AGAGCATTGATATTGCCCTCGATAGCATTATCTTGCTCTTTAACTTCATT
CAGGACAAGGATTTGTTTCATCACCGGTCCTACGCCCGATTGCTCGCCGC
GAGAATCATCAGTTTCTCGTCCGTGAGCGATGAGGCGGAGAAGAGGATGA
TGAAGCATTTGATGCAAGTGTGTGGGTTTCAGTATGCGATGACTTTTCAA
CGCATGTTCATGGACAAAGCCCTCTCCATTGAGCTCTCCCGGGAATTCGG
CAAATGGGAGAGACACCAACGGGCGATGCTTTTGCGGCAACAGCAGCAGC
AGCAACAGTCGTTGCTCGAGGGGGGAGCGAAGGGAGAAGGGGTGGAATTT
TTCGCGTTCATTTTGACGGGTGGCTCGTGGCCGTACCCTTCCACAGGACC
CTTGATGGAGCTCCCTGCCCCCCTGGCCCGGTGCGTTGAATCTTTTTCCA
ACTTCTACGACGCTAAATACAAGCGACGGCGCTTGACCTGGCTGCATGAC
CTGGGCCACGGGGAGGTGCTTTTCCACTGCCCAGCCACTGCTCGGGACTA
CACGCTCCTCGTTTCTACCTCCCAAATCTGTATCTTACTCCTTTTCAACG
CCCGCCCCGCCTGGAGTGTCAAGGAGCTCCTCCAAGCCCTCGACTTGGAT
TTCGCCGAGCTCGTCCTCTGCCTCTACCCTCTCCTGCGATCCCAAGTCCT
GGTCAGTGCGCCTCAAGTAGCTCTTGCTTCGCAGCTGACCCCGCAGCACA
CGGTGGAGGTCAACCTGGTCTTTGCCCGACGCGGCTCCCGCTTGGCTGTC
CCGAGGAAGTGCGACGAAGCGGAGTTGCCTTCTGCTCTCGATTCTCCCCG
CTCCATGGATCCGGGGCGGATTTCTCCCACTTTGTTGAACGAACGGAAGA
GCGCCGTTGAAGCCAAGGTCGTGCATTTGATGAAGAAGGCAGGGAGCATG
CGCCATGATAAATTGATAGAGGCGGTGCTGCAGCACACGAGGCGGATGAA
CTTTCTGCCGCCCGTCGATTTTATTTGTGAGGTGATTCGCTCCGACATTG
ACAAAGACTTTTTAGAGCTGGCAGAGGATGGACCCAACCCTCTCTATCGG
TATCAGGCGTAAGCAGGGAAAAGGTTGAAGGGAGAAAGGAGGGAAAAAGG
GGTGAGGGAAGGAGGGAAGGAGGGATAGAGAGAAAGTAGCCGTAACGTGG
AGGAGATGGAGAGAGAGGTATGTCGATAAGTATTAGTAGTGAATGGCGGG
ACGCATAGACACACAAAACACGTGTCTGAGAATGTGTCTTCTCTCTGTCT
CCCATCTCGAAAGACCCTCGAGTGAGTTCACGTGTGGACTGGATGATGTG
TGTAGGTATGTGCTCGTGTGTCGGATTGAGAAAGAAAGAGTGCAAATTAA
ATAATGTGTTTCTCATCCGTCATCCAGCATTTCAGATTTGCGTCTTGACG
AAGGCAATTCGACATCAAATGTATATCAATGATGAGAGAATGATCAAAGG
CTTTCGAAAGAAAAACTCAAAGAATCAAAGGGATAAAATGCAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|548455 >mRNA_11392-protein ID=mRNA_11392-protein|Name=jgi.p|Nanoce1779_2|548455|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MLESEPHHQILMAFAQAALAFRAERLADLELLYRLLDNDDVDPSKGIEAL
REIFFGFVKEVGAREVKRANEEGRHRQASPIRPDMSHMLARSSLPADYVC
SDAIQMMLDLYSHYLTLVRVTFQDDARFSKAFKKACEHFINALPNMSESL
AIHAHYFLDKNCPESRGTESIDIALDSIILLFNFIQDKDLFHHRSYARLL
AARIISFSSVSDEAEKRMMKHLMQVCGFQYAMTFQRMFMDKALSIELSRE
FGKWERHQRAMLLRQQQQQQQSLLEGGAKGEGVEFFAFILTGGSWPYPST
GPLMELPAPLARCVESFSNFYDAKYKRRRLTWLHDLGHGEVLFHCPATAR
DYTLLVSTSQICILLLFNARPAWSVKELLQALDLDFAELVLCLYPLLRSQ
VLVSAPQVALASQLTPQHTVEVNLVFARRGSRLAVPRKCDEAELPSALDS
PRSMDPGRISPTLLNERKSAVEAKVVHLMKKAGSMRHDKLIEAVLQHTRR
MNFLPPVDFICEVIRSDIDKDFLELAEDGPNPLYRYQA* back to topmRNA from alignment at scaffold_156:8370..11738- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11392 ID=mRNA_11392|Name=jgi.p|Nanoce1779_2|548455|organism=Nannochloropsis oceanica|type=mRNA|length=3369bp|location=Sequence derived from alignment at scaffold_156:8370..11738- (Nannochloropsis oceanica)
AGTGGGGGAGGGGTACATAGGCGGGCTGTATGATCACTTGCATGATTTTT
TGGGGAGACATTGCGAGGTGGTGGTGGGGCGGTTGCAGGTGGCGGCGGAG
AGTCACACGGCCTTTCAATTTTTGGGGTTGTATGCGGACTTGTACCGGCT
GTATACGGAGGGGATGGCGACGGGTGGGAAGCTTCTTGCCTACCTTGATC
GGTTTTGGATCACCAAGCACCATCATAAGAAAGGGGTTGATCCCTGCCAG
GGCGTTATGTTTATCTCGGAGCTTGTCCCACTAATTTGGCGGCAACGTGT
GTTGAGGCGAAATATTTCTGTCTTGCTTCAACGTGCGTTCAATGCTGTAG
TTGCTGACTTGCGCGAAGACCCTGCCGGACCTTCCCCTGAATACCTCGAA
GTTCTTCGGCGTGTGGTGGCTTCCTTCGTAGACCTGGGCACAACGCTCGA
GCCTCTTCATCCTGTAGGTTTCTACAAGCAGCAGCTGGAGGACCATTTGC
TGAAGGAAGTGTATTTGCACTACGTTGAGAGGGCGGGGGCGTTTGCGGCC
CATGTCTCGGCGGGAAAGGTGGATGAGACAGCTGTTGCGGAGTACATTCG
TGGTGTCCAACGGTGTGTGCAAGTGGAGGAGGCGATTTGGGAGCCTGTGA
ACCCATCGACGGTCGCGAGGGGCGGTGAGGGTGGTGAGGAAAAGTATGTT
AGAGAGTGAGCCGCATCATCAGATTCTGATGGCTTTCGCGCAGGCGGCGC
TGGCTTTTCGGGCGGAGCGATTGGCGGATTTGGAGTTGCTGTATCGCCTG
TTGGACAATGACGATGTGGACCCGAGTAAGGGGATCGAGGCTTTAAGGGA
GATCTTTTTTGGGTTTGTCAAGGAGGTGGGGGCGAGGGAGGTGAAGAGGG
CGAATGAGGAGGGGCGGCATCGACAGGCGTCACCCATACGTCCCGATATG
AGCCATATGCTGGCTCGGTCGAGCTTACCGGCCGACTACGTGTGTTCGGA
TGCGATTCAGATGATGCTTGATCTCTATTCCCATTATCTCACCCTGGTTC
GTGTCACCTTTCAGGATGACGCTCGTTTCTCCAAGGCCTTCAAGAAGGCG
TGTGAGCATTTCATTAATGCTCTGCCTAACATGTCGGAGTCTTTGGCGAT
TCACGCCCACTATTTTCTGGACAAGAATTGTCCGGAGTCACGAGGAACGG
AGAGCATTGATATTGCCCTCGATAGCATTATCTTGCTCTTTAACTTCATT
CAGGACAAGGATTTGTTTCATCACCGGTCCTACGCCCGATTGCTCGCCGC
GAGAATCATCAGTTTCTCGTCCGTGAGCGATGAGGCGGAGAAGAGGATGA
TGAAGCATTTGATGCAAGTGTGTGGGTTTCAGTATGCGATGACTTTTCAA
CGCATGTTCATGGACAAAGCCCTCTCCATTGAGCTCTCCCGGGAATTCGG
CAAATGGGAGAGACACCAACGGGCGATGCTTTTGCGGCAACAGCAGCAGC
AGCAACAGTCGTTGCTCGAGGGGGGAGCGAAGGGAGAAGGGGTGGCTGGA
GGGGCCGGAGGGTTGATGGTGATGGAGATAGGAGAGGGGGCAGTGGCGGG
AGGCGCAGGGGGGGGGAGAGGGGAAGGGGGGGGCATGAACGGCGAAAGTC
GGATTCGGCCATTGACTTTGTGGAGACGGAGGGGGGGCATGTGACTCCAA
AAAGTGTGAGTCCGAAACTAAGTCACGGGATGCGTTTCATCGGCTTGCAT
GACGCGAGTCCTTTGCAGATGTTGTTGTCCAAGCGGGTGTTTGCGGATAA
GGTGAAGAGATATAGGGGGGCAGCAGGAATCCGCCTCGACACCTAGCACC
TGTGGGTCTGCTTTGGCCTCGGGCTCCTCCTTCCCTACCTCGTCCTCATC
CTCATCCACCTCTTTGGCTGTTGCCGGTGGTGGTGGAGGAGGCGGAGAGG
GTGGGGGGGGTATAGCCTCTGTTCGTAACCCTTCTTTGCATCGGGGCAAT
ACCTTCTTCTTCGGGGACCACGACATGTACTCGCCGGGAGCAGCAGCAGC
GGGAGGGGGGGGGGGGGAGGGGGAGGACGGGGTGGAGCGGGCTTCTCGTG
GTCGCATTCCGTGTTGGACGCTCCGCACATGAAGCAACAGCGGCAGGGAG
GAGCCGAGCAAGAGGTGGAATTTTTCGCGTTCATTTTGACGGGTGGCTCG
TGGCCGTACCCTTCCACAGGACCCTTGATGGAGCTCCCTGCCCCCCTGGC
CCGGTGCGTTGAATCTTTTTCCAACTTCTACGACGCTAAATACAAGCGAC
GGCGCTTGACCTGGCTGCATGACCTGGGCCACGGGGAGGTGCTTTTCCAC
TGCCCAGCCACTGCTCGGGACTACACGCTCCTCGTTTCTACCTCCCAAAT
CTGTATCTTACTCCTTTTCAACGCCCGCCCCGCCTGGAGTGTCAAGGAGC
TCCTCCAAGCCCTCGACTTGGATTTCGCCGAGCTCGTCCTCTGCCTCTAC
CCTCTCCTGCGATCCCAAGTCCTGGTCAGTGCGCCTCAAGTAGCTCTTGC
TTCGCAGCTGACCCCGCAGCACACGGTGGAGGTCAACCTGGTCTTTGCCC
GACGCGGCTCCCGCTTGGCTGTCCCGAGGAAGTGCGACGAAGCGGAGTTG
CCTTCTGCTCTCGATTCTCCCCGCTCCATGGATCCGGGGCGGATTTCTCC
CACTTTGTTGAACGAACGGAAGAGCGCCGTTGAAGCCAAGGTCGTGCATT
TGATGAAGAAGGCAGGGAGCATGCGCCATGATAAATTGATAGAGGCGGTG
CTGCAGCACACGAGGCGGATGAACTTTCTGCCGCCCGTCGATTTTATTTG
TGAGGTGATTCGCTCCGACATTGACAAAGACTTTTTAGAGCTGGCAGAGG
ATGGACCCAACCCTCTCTATCGGTATCAGGCGTAAGCAGGGAAAAGGTTG
AAGGGAGAAAGGAGGGAAAAAGGGGTGAGGGAAGGAGGGAAGGAGGGATA
GAGAGAAAGTAGCCGTAACGTGGAGGAGATGGAGAGAGAGGTATGTCGAT
AAGTATTAGTAGTGAATGGCGGGACGCATAGACACACAAAACACGTGTCT
GAGAATGTGTCTTCTCTCTGTCTCCCATCTCGAAAGACCCTCGAGTGAGT
TCACGTGTGGACTGGATGATGTGTGTAGGTATGTGCTCGTGTGTCGGATT
GAGAAAGAAAGAGTGCAAATTAAATAATGTGTTTCTCATCCGTCATCCAG
CATTTCAGATTTGCGTCTTGACGAAGGCAATTCGACATCAAATGTATATC
AATGATGAGAGAATGATCAAAGGCTTTCGAAAGAAAAACTCAAAGAATCA
AAGGGATAAAATGCAAAAA back to topCoding sequence (CDS) from alignment at scaffold_156:8370..11738- >mRNA_11392 ID=mRNA_11392|Name=jgi.p|Nanoce1779_2|548455|organism=Nannochloropsis oceanica|type=CDS|length=3234bp|location=Sequence derived from alignment at scaffold_156:8370..11738- (Nannochloropsis oceanica)
GTGGAATTTTTCGCGTTCATTTTGACGGGTGGCTCGTGGCCGTACCCTTC
CACAGGACCCTTGATGGAGCTCCCTGCCCCCCTGGCCCGGTGCGTTGAAT
CTTTTTCCAACTTCTACGACGCTAAATACAAGCGACGGCGCTTGACCTGG
CTGCATGACCTGGGCCACGGGGAGGTGCTTTTCCACTGCCCAGCCACTGC
TCGGGACTACACGCTCCTCGTTTCTACCTCCCAAATCTGTATCTTACTCC
TTTTCAACGCCCGCCCCGCCTGGAGTGTCAAGGAGCTCCTCCAAGCCCTC
GACTTGGATTTCGCCGAGCTCGTCCTCTGCCTCTACCCTCTCCTGCGATC
CCAAGTCCTGGTCAGTGCGCCTCAAGTAGCTCTTGCTTCGCAGCTGACCC
CGCAGCACACGGTGGAGGTCAACCTGGTCTTTGCCCGACGCGGCTCCCGC
TTGGCTGTCCCGAGGAAGTGCGACGAAGCGGAGTTGCCTTCTGCTCTCGA
TTCTCCCCGCTCCATGGATCCGGGGCGGATTTCTCCCACTTTGTTGAACG
AACGGAAGAGCGCCGTTGAAGCCAAGGTCGTGCATTTGATGAAGAAGGCA
GGGAGCATGCGCCATGATAAATTGATAGAGGCGGTGCTGCAGCACACGAG
GCGGATGAACTTTCTGCCGCCCGTCGATTTTATTTGTGAGGTGATTCGCT
CCGACATTGACAAAGACTTTTTAGAGCTGGCAGAGGATGGACCCAACCCT
CTCTATCGGTATCAGGCGTAAATGTTAGAGAGTGAGCCGCATCATCAGAT
TCTGATGGCTTTCGCGCAGGCGGCGCTGGCTTTTCGGGCGGAGCGATTGG
CGGATTTGGAGTTGCTGTATCGCCTGTTGGACAATGACGATGTGGACCCG
AGTAAGGGGATCGAGGCTTTAAGGGAGATCTTTTTTGGGTTTGTCAAGGA
GGTGGGGGCGAGGGAGGTGAAGAGGGCGAATGAGGAGGGGCGGCATCGAC
AGGCGTCACCCATACGTCCCGATATGAGCCATATGCTGGCTCGGTCGAGC
TTACCGGCCGACTACGTGTGTTCGGATGCGATTCAGATGATGCTTGATCT
CTATTCCCATTATCTCACCCTGGTTCGTGTCACCTTTCAGGATGACGCTC
GTTTCTCCAAGGCCTTCAAGAAGGCGTGTGAGCATTTCATTAATGCTCTG
CCTAACATGTCGGAGTCTTTGGCGATTCACGCCCACTATTTTCTGGACAA
GAATTGTCCGGAGTCACGAGGAACGGAGAGCATTGATATTGCCCTCGATA
GCATTATCTTGCTCTTTAACTTCATTCAGGACAAGGATTTGTTTCATCAC
CGGTCCTACGCCCGATTGCTCGCCGCGAGAATCATCAGTTTCTCGTCCGT
GAGCGATGAGGCGGAGAAGAGGATGATGAAGCATTTGATGCAAGTGTGTG
GGTTTCAGTATGCGATGACTTTTCAACGCATGTTCATGGACAAAGCCCTC
TCCATTGAGCTCTCCCGGGAATTCGGCAAATGGGAGAGACACCAACGGGC
GATGCTTTTGCGGCAACAGCAGCAGCAGCAACAGTCGTTGCTCGAGGGGG
GAGCGAAGGGAGAAGGGGTGGAATTTTTCGCGTTCATTTTGACGGGTGGC
TCGTGGCCGTACCCTTCCACAGGACCCTTGATGGAGCTCCCTGCCCCCCT
GGCCCGGTGCGTTGAATCTTTTTCCAACTTCTACGACGCTAAATACAAGC
GACGGCGCTTGACCTGGCTGCATGACCTGGGCCACGGGGAGGTGCTTTTC
CACTGCCCAGCCACTGCTCGGGACTACACGCTCCTCGTTTCTACCTCCCA
AATCTGTATCTTACTCCTTTTCAACGCCCGCCCCGCCTGGAGTGTCAAGG
AGCTCCTCCAAGCCCTCGACTTGGATTTCGCCGAGCTCGTCCTCTGCCTC
TACCCTCTCCTGCGATCCCAAGTCCTGGTCAGTGCGCCTCAAGTAGCTCT
TGCTTCGCAGCTGACCCCGCAGCACACGGTGGAGGTCAACCTGGTCTTTG
CCCGACGCGGCTCCCGCTTGGCTGTCCCGAGGAAGTGCGACGAAGCGGAG
TTGCCTTCTGCTCTCGATTCTCCCCGCTCCATGGATCCGGGGCGGATTTC
TCCCACTTTGTTGAACGAACGGAAGAGCGCCGTTGAAGCCAAGGTCGTGC
ATTTGATGAAGAAGGCAGGGAGCATGCGCCATGATAAATTGATAGAGGCG
GTGCTGCAGCACACGAGGCGGATGAACTTTCTGCCGCCCGTCGATTTTAT
TTGTGAGGTGATTCGCTCCGACATTGACAAAGACTTTTTAGAGCTGGCAG
AGGATGGACCCAACCCTCTCTATCGGTATCAGGCGTAAATGTTAGAGAGT
GAGCCGCATCATCAGATTCTGATGGCTTTCGCGCAGGCGGCGCTGGCTTT
TCGGGCGGAGCGATTGGCGGATTTGGAGTTGCTGTATCGCCTGTTGGACA
ATGACGATGTGGACCCGAGTAAGGGGATCGAGGCTTTAAGGGAGATCTTT
TTTGGGTTTGTCAAGGAGGTGGGGGCGAGGGAGGTGAAGAGGGCGAATGA
GGAGGGGCGGCATCGACAGGCGTCACCCATACGTCCCGATATGAGCCATA
TGCTGGCTCGGTCGAGCTTACCGGCCGACTACGTGTGTTCGGATGCGATT
CAGATGATGCTTGATCTCTATTCCCATTATCTCACCCTGGTTCGTGTCAC
CTTTCAGGATGACGCTCGTTTCTCCAAGGCCTTCAAGAAGGCGTGTGAGC
ATTTCATTAATGCTCTGCCTAACATGTCGGAGTCTTTGGCGATTCACGCC
CACTATTTTCTGGACAAGAATTGTCCGGAGTCACGAGGAACGGAGAGCAT
TGATATTGCCCTCGATAGCATTATCTTGCTCTTTAACTTCATTCAGGACA
AGGATTTGTTTCATCACCGGTCCTACGCCCGATTGCTCGCCGCGAGAATC
ATCAGTTTCTCGTCCGTGAGCGATGAGGCGGAGAAGAGGATGATGAAGCA
TTTGATGCAAGTGTGTGGGTTTCAGTATGCGATGACTTTTCAACGCATGT
TCATGGACAAAGCCCTCTCCATTGAGCTCTCCCGGGAATTCGGCAAATGG
GAGAGACACCAACGGGCGATGCTTTTGCGGCAACAGCAGCAGCAGCAACA
GTCGTTGCTCGAGGGGGGAGCGAAGGGAGAAGGG back to top
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