jgi.p|Nanoce1779_2|618443, mRNA_11398 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|618443
Unique NamemRNA_11398
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1332
Alignment locationscaffold_156:23856..25563 +

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Properties
Property NameValue
TranscriptId618529
TrackFilteredModels2
ProteinId618443
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:23856..25563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618443gene_11398Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|618443mRNA_11398-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11398CDS_11398Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11398 ID=mRNA_11398|Name=jgi.p|Nanoce1779_2|618443|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCTCCACCTGAACC
GATCCACTCACTCGTACTTTAGTCGATCAAGCCCAAGGCGTTCATCTCGG
TCATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACGGTCATCTAC
AAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGTTGAAGCCAG
TGACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGGTAAGTCTCCTTT
TGGTTGCTGCTGCAACACAAATGACGCTCCTCCGGGACCGCAAGACCACC
ACGCGGGACTTCCGGCACCTAATGCGAGAGCTCACTCTGTACCTAGGCTA
TGAAGCCACCACTGAAATCACGCTGAAGCCACGCAAGCTCTCGGACAAAA
TCGCCATCGTTCCATCCTTCGAGGGGGGTTTGGGAATGGTCGATGCCATG
ACGGAGATCTTGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTAA
CCATAAGTCCTCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAGG
AGAAGGATAAAGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGCC
ACTGCCGGGACCTGTAGTGCCACGGTCTCGACCTTGAAAAATGGGGCGCT
AAGAAGATCGTGGCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGA
CGAGGCGATTTCAGAGGACGGGCAATATCCTGCCCGGGATTGGCGATGCG
AGTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGAC
CTCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGA
ATGGTTGTTAGAGGAAGAGGGAGGAAGGGAGGAATCTGAGTGCCGGCGGG
TTTGACATTTGAATAGAGGGAGGAGGGTACAAGGAAGTGAGGACGGGCAG
CGAGGAGGGGGAAAAATAGATACTCGGCTTTGAATGCGAGGAGGAAGGAG
GGGAGAGAGGCGAGAAGAGGAGGGCAAAGCGACTGTATAAATGGATAGCT
ACACATATAAGTTTGTCAAGAGGAGCTTTGAGTGAATTACCGTCACGGGA
CGCGGCGGAGCAGAGCCAGGCAGACTGATGTGCGCTGGATACAATCGGCA
AAGAGGAAAAGAAGGAAACACAGTATGAAAACTTGATATTTCAGAACAAG
TGGCCCAGGGATGGGAAGGCGCGTGCGACTACACATCAACACTCCCTCGC
GTACTGCTGCAGTTGTGACACAACCGGAGGGAGAAATAGAAACAGAACAC
AAGAAGAAAGACTCACCACGCACGCACAAAGG
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protein sequence of jgi.p|Nanoce1779_2|618443

>mRNA_11398-protein ID=mRNA_11398-protein|Name=jgi.p|Nanoce1779_2|618443|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MPSSIAATVIYKRPASPAISVSSCVEASDLPSSVYCSGHPVSLLLVAAAT
QMTLLRDRKTTTRDFRHLMRELTLYLGYEATTEITLKPRKLSDKIAIVPS
FEGGLGMVDAMTEILPNAAVYHIGMFSNHKSSSLPIQYYNRLPKEKDKVA
DLTFVLDPLIATAGTCSATVSTLKNGALRRSWHTLIFECMWRRSTRRFQR
TGNILPGIGDASERLFTAYGVGEHDDETSVHTVASAKKRKAGEKNGC*
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mRNA from alignment at scaffold_156:23856..25563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11398 ID=mRNA_11398|Name=jgi.p|Nanoce1779_2|618443|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at scaffold_156:23856..25563+ (Nannochloropsis oceanica)
ACAGCTCAGACAATAGGCAATCAATTTTTAGGAAGCGCTCCACCTGAACC
GATCCACTCACTCGTACTTTAGTCGATCAAGCCCAAGGCGTTCATCTCGG
TCATCCCCACCACCATCATGCCCTCCTCCATCGCCGCTACGGTCATCTAC
AAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTCGTGCGTTGAAGCCAG
TGACCTACCCTCCAGTGTATATTGCAGCGGCCACCCGGTAAGTCTCCTTT
TGGTTGGTGCGTATGTCCGTGCCTGGCACACAGTGCCATATGTATTGGTG
ATGGCTTCCCTCCTGATAGAAATGTTACAACTTCGGACCCTGTCTACCGT
CATTCCGCCAGCCATTACATCAATCAAACAGAGACACAAACAATTCTTCA
TCAGTTTAACTCCCACCCATTCAAAACAAACACCCTCAACGACCTCTCCT
TCCCTTCAGCTGCTGCAACACAAATGACGCTCCTCCGGGACCGCAAGACC
ACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCACTCTGTACCTAGG
CTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCGTAGTGGAGGGGT
ACTCTGGGGCCCGTGGCCGGGCAGAAGCTCTCGGACAAAATCGCCATCGT
TCCATCCTTCGAGGGGGGTTTGGGAATGGTCGATGCCATGACGGAGATCT
TGCCGAATGCCGCTGTGTATCACATTGGTATGTTTAGTAACCATAAGTCC
TCCAGCTTGCCTATTCAATACTACAATCGCCTGCCCAAGGAGAAGGATAA
AGTCGCCGACCTCACCTTCGTCCTTGACCCTCTCATTGCCACTGCCGGGA
CCTGTAGTGCCACGGTCTCGACCTTGAAAAATGGGGCGCTAAGAAGATCG
TGGTGATTGGTGTGGGTGGTTCGCTGCAAGGGCTGCATAAGCTGACCCAG
GCACACCCTGATATTCGAGTGCATGTGGCGTCGATCGACGAGGCGATTTC
AGAGGACGGGCAATATCCTGCCCGGGATTGGCGATGCGAGTGAAAGGTTG
TTCACTGCCTATGGAGTGGGGGAGCATGACGACGAGACCTCAGTGCACAC
GGTGGCCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGA
GGAAGAGGGAGGAAGGGAGGAATCTGAGTGCCGGCGGGTTTGACATTTGA
ATAGAGGGAGGAGGGTACAAGGAAGTGAGGACGGGCAGCGAGGAGGGGGA
AAAATAGATACTCGGCTTTGAATGCGAGGAGGAAGGAGGGGAGAGAGGCG
AGAAGAGGAGGGCAAAGCGACTGTATAAATGGATAGCTACACATATAAGT
TTGTCAAGAGGAGCTTTGAGTGAATTACCGTCACGGGACGCGGCGGAGCA
GAGCCAGGCAGACTGATGTGCGCTGGATACAATCGGCAAAGAGGAAAAGA
AGGAAACACAGTATGAAAACTTGATATTTCAGAACAAGTGGCCCAGGGAT
GGGAAGGCGCGTGCGACTACACATCAACACTCCCTCGCGTACTGCTGCAG
TTGTGACACAACCGGAGGGAGAAATAGAAACAGAACACAAGAGAAAGACT
CACCACGCACGCACAAAGGCATCGGTGCTTTCGACTACATCCAAGTTGTC
TATTTATCTATTATTTCATTGGTTGCTCGAAGAAAGACTCACCACGCACG
CACAAAGG
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Coding sequence (CDS) from alignment at scaffold_156:23856..25563+

>mRNA_11398 ID=mRNA_11398|Name=jgi.p|Nanoce1779_2|618443|organism=Nannochloropsis oceanica|type=CDS|length=2976bp|location=Sequence derived from alignment at scaffold_156:23856..25563+ (Nannochloropsis oceanica)
ATGCCCTCCTCCATCGCCGCTACGGTCATCTACAAGCGGCCGGCGTCGCC
TGCCATCTCCGTATCCTCGTGCGTTGAAGCCAGTGACCTACCCTCCAGTG
TATATTGCAGCGGCCACCCGGTAAGTCTCCTTTTGGTTGCTGCTGCAACA
CAAATGACGCTCCTCCGGGACCGCAAGACCACCACGCGGGACTTCCGGCA
CCTAATGCGAGAGCTCACTCTGTACCTAGGCTATGAAGCCACCACTGAAA
TCACGCTGAAGCCACGCAAGCTCTCGGACAAAATCGCCATCGTTCCATCC
TTCGAGGGGGGTTTGGGAATGGTCGATGCCATGACGGAGATCTTGCCGAA
TGCCGCTGTGTATCACATTGGTATGTTTAGTAACCATAAGTCCTCCAGCT
TGCCTATTCAATACTACAATCGCCTGCCCAAGGAGAAGGATAAAGTCGCC
GACCTCACCTTCGTCCTTGACCCTCTCATTGCCACTGCCGGGACCTGTAG
TGCCACGGTCTCGACCTTGAAAAATGGGGCGCTAAGAAGATCGTGGCACA
CCCTGATATTCGAGTGCATGTGGCGTCGATCGACGAGGCGATTTCAGAGG
ACGGGCAATATCCTGCCCGGGATTGGCGATGCGAGTGAAAGGTTGTTCAC
TGCCTATGGAGTGGGGGAGCATGACGACGAGACCTCAGTGCACACGGTGG
CCTCGGCCAAGAAGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGATGCCC
TCCTCCATCGCCGCTACGGTCATCTACAAGCGGCCGGCGTCGCCTGCCAT
CTCCGTATCCTCGTGCGTTGAAGCCAGTGACCTACCCTCCAGTGTATATT
GCAGCGGCCACCCGGTAAGTCTCCTTTTGGTTGCTGCTGCAACACAAATG
ACGCTCCTCCGGGACCGCAAGACCACCACGCGGGACTTCCGGCACCTAAT
GCGAGAGCTCACTCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGC
TGAAGCCACGCAAGCTCTCGGACAAAATCGCCATCGTTCCATCCTTCGAG
GGGGGTTTGGGAATGGTCGATGCCATGACGGAGATCTTGCCGAATGCCGC
TGTGTATCACATTGGTATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTA
TTCAATACTACAATCGCCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTC
ACCTTCGTCCTTGACCCTCTCATTGCCACTGCCGGGACCTGTAGTGCCAC
GGTCTCGACCTTGAAAAATGGGGCGCTAAGAAGATCGTGGCACACCCTGA
TATTCGAGTGCATGTGGCGTCGATCGACGAGGCGATTTCAGAGGACGGGC
AATATCCTGCCCGGGATTGGCGATGCGAGTGAAAGGTTGTTCACTGCCTA
TGGAGTGGGGGAGCATGACGACGAGACCTCAGTGCACACGGTGGCCTCGG
CCAAGAAGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGATGCCCTCCTCC
ATCGCCGCTACGGTCATCTACAAGCGGCCGGCGTCGCCTGCCATCTCCGT
ATCCTCGTGCGTTGAAGCCAGTGACCTACCCTCCAGTGTATATTGCAGCG
GCCACCCGGTAAGTCTCCTTTTGGTTGCTGCTGCAACACAAATGACGCTC
CTCCGGGACCGCAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGA
GCTCACTCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGC
CACGCAAGCTCTCGGACAAAATCGCCATCGTTCCATCCTTCGAGGGGGGT
TTGGGAATGGTCGATGCCATGACGGAGATCTTGCCGAATGCCGCTGTGTA
TCACATTGGTATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTATTCAAT
ACTACAATCGCCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTCACCTTC
GTCCTTGACCCTCTCATTGCCACTGCCGGGACCTGTAGTGCCACGGTCTC
GACCTTGAAAAATGGGGCGCTAAGAAGATCGTGGCACACCCTGATATTCG
AGTGCATGTGGCGTCGATCGACGAGGCGATTTCAGAGGACGGGCAATATC
CTGCCCGGGATTGGCGATGCGAGTGAAAGGTTGTTCACTGCCTATGGAGT
GGGGGAGCATGACGACGAGACCTCAGTGCACACGGTGGCCTCGGCCAAGA
AGAGGAAGGCGGGTGAGAAGAATGGTTGTTAGATGCCCTCCTCCATCGCC
GCTACGGTCATCTACAAGCGGCCGGCGTCGCCTGCCATCTCCGTATCCTC
GTGCGTTGAAGCCAGTGACCTACCCTCCAGTGTATATTGCAGCGGCCACC
CGGTAAGTCTCCTTTTGGTTGCTGCTGCAACACAAATGACGCTCCTCCGG
GACCGCAAGACCACCACGCGGGACTTCCGGCACCTAATGCGAGAGCTCAC
TCTGTACCTAGGCTATGAAGCCACCACTGAAATCACGCTGAAGCCACGCA
AGCTCTCGGACAAAATCGCCATCGTTCCATCCTTCGAGGGGGGTTTGGGA
ATGGTCGATGCCATGACGGAGATCTTGCCGAATGCCGCTGTGTATCACAT
TGGTATGTTTAGTAACCATAAGTCCTCCAGCTTGCCTATTCAATACTACA
ATCGCCTGCCCAAGGAGAAGGATAAAGTCGCCGACCTCACCTTCGTCCTT
GACCCTCTCATTGCCACTGCCGGGACCTGTAGTGCCACGGTCTCGACCTT
GAAAAATGGGGCGCTAAGAAGATCGTGGCACACCCTGATATTCGAGTGCA
TGTGGCGTCGATCGACGAGGCGATTTCAGAGGACGGGCAATATCCTGCCC
GGGATTGGCGATGCGAGTGAAAGGTTGTTCACTGCCTATGGAGTGGGGGA
GCATGACGACGAGACCTCAGTGCACACGGTGGCCTCGGCCAAGAAGAGGA
AGGCGGGTGAGAAGAATGGTTGTTAG
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Synonyms
Publications