scaffold_94, scaffold_94 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_94
Unique Name	scaffold_94
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	47063
Alignment location	jgi.p\|Nanoce1779_2\|451246:16144..19487 -
Alignment location	jgi.p\|Nanoce1779_2\|451246:16144..19487 -
Alignment location	CDS_11380:18647..19069 -
Alignment location	CDS_11380:18337..18491 -
Alignment location	CDS_11380:17627..17975 -
Alignment location	CDS_11380:17168..17503 -
Alignment location	CDS_11380:16875..17002 -
Alignment location	CDS_11380:16500..16667 -
Alignment location	CDS_11380:16213..16303 -
Alignment location	jgi.p\|Nanoce1779_2\|451462:34448..36820 -
Alignment location	jgi.p\|Nanoce1779_2\|451462:34448..36820 -
Alignment location	CDS_11385:36608..36658 -
Alignment location	CDS_11385:36084..36317 -
Alignment location	CDS_11385:35860..35991 -
Alignment location	CDS_11385:35431..35631 -
Alignment location	CDS_11385:34822..34989 -
Alignment location	CDS_11385:34562..34570 -
Alignment location	jgi.p\|Nanoce1779_2\|451828:46479..46905 -
Alignment location	jgi.p\|Nanoce1779_2\|451828:46479..46905 -
Alignment location	CDS_11388:46626..46859 -
Alignment location	jgi.p\|Nanoce1779_2\|534411:4539..4892 -
Alignment location	jgi.p\|Nanoce1779_2\|534411:4539..4892 -
Alignment location	CDS_11377:4539..4892 -
Alignment location	jgi.p\|Nanoce1779_2\|570324:3285..3737 -
Alignment location	jgi.p\|Nanoce1779_2\|570324:3285..3737 -
Alignment location	CDS_11376:3285..3737 -
Alignment location	jgi.p\|Nanoce1779_2\|614941:318..1336 -
Alignment location	jgi.p\|Nanoce1779_2\|614941:318..1336 -
Alignment location	CDS_11374:1082..1175 -
Alignment location	CDS_11374:387..865 -
Alignment location	jgi.p\|Nanoce1779_2\|614944:2205..2616 -
Alignment location	jgi.p\|Nanoce1779_2\|614944:2205..2616 -
Alignment location	CDS_11375:2323..2562 -
Alignment location	jgi.p\|Nanoce1779_2\|614950:5601..8726 +
Alignment location	jgi.p\|Nanoce1779_2\|614950:5601..8726 +
Alignment location	CDS_11378:5619..5919 +
Alignment location	CDS_11378:6056..6120 +
Alignment location	CDS_11378:6297..6410 +
Alignment location	CDS_11378:6590..6689 +
Alignment location	CDS_11378:6901..7028 +
Alignment location	CDS_11378:7120..7260 +
Alignment location	CDS_11378:7463..7543 +
Alignment location	CDS_11378:7696..7817 +
Alignment location	CDS_11378:8117..8258 +
Alignment location	jgi.p\|Nanoce1779_2\|614977:22449..23965 -
Alignment location	jgi.p\|Nanoce1779_2\|614977:22449..23965 -
Alignment location	CDS_11382:23244..23765 -
Alignment location	jgi.p\|Nanoce1779_2\|614991:33197..34229 +
Alignment location	jgi.p\|Nanoce1779_2\|614991:33197..34229 +
Alignment location	CDS_11384:33392..33524 +
Alignment location	CDS_11384:33836..33975 +
Alignment location	jgi.p\|Nanoce1779_2\|615014:41754..46342 -
Alignment location	jgi.p\|Nanoce1779_2\|615014:41754..46342 -
Alignment location	CDS_11387:46016..46068 -
Alignment location	CDS_11387:45725..45892 -
Alignment location	CDS_11387:45451..45560 -
Alignment location	CDS_11387:45152..45229 -
Alignment location	CDS_11387:44857..44954 -
Alignment location	CDS_11387:44443..44567 -
Alignment location	CDS_11387:44197..44254 -
Alignment location	CDS_11387:43925..44047 -
Alignment location	CDS_11387:43681..43764 -
Alignment location	CDS_11387:43451..43531 -
Alignment location	CDS_11387:43162..43305 -
Alignment location	CDS_11387:42731..42865 -
Alignment location	CDS_11387:42301..42453 -
Alignment location	CDS_11387:41940..42047 -
Alignment location	jgi.p\|Nanoce1779_2\|626471:34266..41759 -
Alignment location	jgi.p\|Nanoce1779_2\|626471:34266..41759 -
Alignment location	CDS_11386:40920..41606 -
Alignment location	CDS_11386:40566..40730 -
Alignment location	CDS_11386:40229..40375 -
Alignment location	CDS_11386:40097..40130 -
Alignment location	CDS_11386:39849..39982 -
Alignment location	CDS_11386:39513..39602 -
Alignment location	CDS_11386:39156..39311 -
Alignment location	CDS_11386:38641..38763 -
Alignment location	CDS_11386:38173..38463 -
Alignment location	jgi.p\|Nanoce1779_2\|675318:9113..15259 +
Alignment location	jgi.p\|Nanoce1779_2\|675318:9113..15259 +
Alignment location	CDS_11379:9146..9290 +
Alignment location	CDS_11379:9467..9656 +
Alignment location	CDS_11379:9822..10107 +
Alignment location	CDS_11379:10225..10407 +
Alignment location	CDS_11379:10576..10654 +
Alignment location	CDS_11379:10772..10911 +
Alignment location	CDS_11379:11023..11121 +
Alignment location	CDS_11379:11378..11429 +
Alignment location	CDS_11379:11581..11698 +
Alignment location	CDS_11379:11813..11927 +
Alignment location	CDS_11379:12040..12161 +
Alignment location	CDS_11379:12427..12554 +
Alignment location	CDS_11379:12654..12756 +
Alignment location	CDS_11379:12877..12954 +
Alignment location	CDS_11379:13210..13293 +
Alignment location	CDS_11379:13435..13548 +
Alignment location	CDS_11379:15122..15185 +
Alignment location	jgi.p\|Nanoce1779_2\|675320:19146..22448 +
Alignment location	jgi.p\|Nanoce1779_2\|675320:19146..22448 +
Alignment location	CDS_11381:19191..19479 +
Alignment location	CDS_11381:19747..19880 +
Alignment location	CDS_11381:19996..20245 +
Alignment location	CDS_11381:20479..20622 +
Alignment location	CDS_11381:20848..21017 +
Alignment location	CDS_11381:21233..21313 +
Alignment location	CDS_11381:21462..21553 +
Alignment location	CDS_11381:21773..22226 +
Alignment location	jgi.p\|Nanoce1779_2\|675322:25587..33058 -
Alignment location	jgi.p\|Nanoce1779_2\|675322:25587..33058 -
Alignment location	CDS_11383:32114..32659 -
Alignment location	CDS_11383:31603..31944 -
Alignment location	CDS_11383:31287..31448 -
Alignment location	CDS_11383:31098..31178 -
Alignment location	CDS_11383:30740..30834 -
Alignment location	CDS_11383:30368..30528 -
Alignment location	CDS_11383:30104..30240 -
Alignment location	CDS_11383:29862..29998 -
Alignment location	CDS_11383:29469..29545 -
Alignment location	CDS_11383:27132..27696 -
Alignment location	CDS_11383:26460..26691 -
Alignment location	CDS_11383:26130..26346 -
Alignment location	CDS_11383:25644..25792 -
Alignment location	jgi.p\|Nanoce1779_2\|451246:16213..19069 -
Alignment location	jgi.p\|Nanoce1779_2\|451462:34562..36658 -
Alignment location	jgi.p\|Nanoce1779_2\|451828:46626..46859 -
Alignment location	jgi.p\|Nanoce1779_2\|534411:4539..4892 -
Alignment location	jgi.p\|Nanoce1779_2\|570324:3285..3737 -
Alignment location	jgi.p\|Nanoce1779_2\|614941:387..1175 -
Alignment location	jgi.p\|Nanoce1779_2\|614944:2323..2562 -
Alignment location	jgi.p\|Nanoce1779_2\|614950:5619..8258 +
Alignment location	jgi.p\|Nanoce1779_2\|614977:23244..23765 -
Alignment location	jgi.p\|Nanoce1779_2\|614991:33392..33975 +
Alignment location	jgi.p\|Nanoce1779_2\|615014:41940..46068 -
Alignment location	jgi.p\|Nanoce1779_2\|626471:38173..41606 -
Alignment location	jgi.p\|Nanoce1779_2\|675318:9146..15185 +
Alignment location	jgi.p\|Nanoce1779_2\|675320:19191..22226 +
Alignment location	jgi.p\|Nanoce1779_2\|675322:25644..32659 -
Alignment location	ncniL009:319..46342 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|451246	gene	jgi.p\|Nanoce1779_2\|451246:16144..19487 -
jgi.p\|Nanoce1779_2\|451246	mRNA	jgi.p\|Nanoce1779_2\|451246:16144..19487 -
CDS_11380	CDS	CDS_11380:18647..19069 -
CDS_11380	CDS	CDS_11380:18337..18491 -
CDS_11380	CDS	CDS_11380:17627..17975 -
CDS_11380	CDS	CDS_11380:17168..17503 -
CDS_11380	CDS	CDS_11380:16875..17002 -
CDS_11380	CDS	CDS_11380:16500..16667 -
CDS_11380	CDS	CDS_11380:16213..16303 -
jgi.p\|Nanoce1779_2\|451462	gene	jgi.p\|Nanoce1779_2\|451462:34448..36820 -
jgi.p\|Nanoce1779_2\|451462	mRNA	jgi.p\|Nanoce1779_2\|451462:34448..36820 -
CDS_11385	CDS	CDS_11385:36608..36658 -
CDS_11385	CDS	CDS_11385:36084..36317 -
CDS_11385	CDS	CDS_11385:35860..35991 -
CDS_11385	CDS	CDS_11385:35431..35631 -
CDS_11385	CDS	CDS_11385:34822..34989 -
CDS_11385	CDS	CDS_11385:34562..34570 -
jgi.p\|Nanoce1779_2\|451828	gene	jgi.p\|Nanoce1779_2\|451828:46479..46905 -
jgi.p\|Nanoce1779_2\|451828	mRNA	jgi.p\|Nanoce1779_2\|451828:46479..46905 -
CDS_11388	CDS	CDS_11388:46626..46859 -
jgi.p\|Nanoce1779_2\|534411	gene	jgi.p\|Nanoce1779_2\|534411:4539..4892 -
jgi.p\|Nanoce1779_2\|534411	mRNA	jgi.p\|Nanoce1779_2\|534411:4539..4892 -
CDS_11377	CDS	CDS_11377:4539..4892 -
jgi.p\|Nanoce1779_2\|570324	gene	jgi.p\|Nanoce1779_2\|570324:3285..3737 -
jgi.p\|Nanoce1779_2\|570324	mRNA	jgi.p\|Nanoce1779_2\|570324:3285..3737 -
CDS_11376	CDS	CDS_11376:3285..3737 -
jgi.p\|Nanoce1779_2\|614941	gene	jgi.p\|Nanoce1779_2\|614941:318..1336 -
jgi.p\|Nanoce1779_2\|614941	mRNA	jgi.p\|Nanoce1779_2\|614941:318..1336 -
CDS_11374	CDS	CDS_11374:1082..1175 -
CDS_11374	CDS	CDS_11374:387..865 -
jgi.p\|Nanoce1779_2\|614944	gene	jgi.p\|Nanoce1779_2\|614944:2205..2616 -
jgi.p\|Nanoce1779_2\|614944	mRNA	jgi.p\|Nanoce1779_2\|614944:2205..2616 -
CDS_11375	CDS	CDS_11375:2323..2562 -
jgi.p\|Nanoce1779_2\|614950	gene	jgi.p\|Nanoce1779_2\|614950:5601..8726 +
jgi.p\|Nanoce1779_2\|614950	mRNA	jgi.p\|Nanoce1779_2\|614950:5601..8726 +
CDS_11378	CDS	CDS_11378:5619..5919 +
CDS_11378	CDS	CDS_11378:6056..6120 +
CDS_11378	CDS	CDS_11378:6297..6410 +
CDS_11378	CDS	CDS_11378:6590..6689 +
CDS_11378	CDS	CDS_11378:6901..7028 +
CDS_11378	CDS	CDS_11378:7120..7260 +
CDS_11378	CDS	CDS_11378:7463..7543 +
CDS_11378	CDS	CDS_11378:7696..7817 +
CDS_11378	CDS	CDS_11378:8117..8258 +
jgi.p\|Nanoce1779_2\|614977	gene	jgi.p\|Nanoce1779_2\|614977:22449..23965 -
jgi.p\|Nanoce1779_2\|614977	mRNA	jgi.p\|Nanoce1779_2\|614977:22449..23965 -
CDS_11382	CDS	CDS_11382:23244..23765 -
jgi.p\|Nanoce1779_2\|614991	gene	jgi.p\|Nanoce1779_2\|614991:33197..34229 +
jgi.p\|Nanoce1779_2\|614991	mRNA	jgi.p\|Nanoce1779_2\|614991:33197..34229 +
CDS_11384	CDS	CDS_11384:33392..33524 +
CDS_11384	CDS	CDS_11384:33836..33975 +
jgi.p\|Nanoce1779_2\|615014	gene	jgi.p\|Nanoce1779_2\|615014:41754..46342 -
jgi.p\|Nanoce1779_2\|615014	mRNA	jgi.p\|Nanoce1779_2\|615014:41754..46342 -
CDS_11387	CDS	CDS_11387:46016..46068 -
CDS_11387	CDS	CDS_11387:45725..45892 -
CDS_11387	CDS	CDS_11387:45451..45560 -
CDS_11387	CDS	CDS_11387:45152..45229 -
CDS_11387	CDS	CDS_11387:44857..44954 -
CDS_11387	CDS	CDS_11387:44443..44567 -
CDS_11387	CDS	CDS_11387:44197..44254 -
CDS_11387	CDS	CDS_11387:43925..44047 -
CDS_11387	CDS	CDS_11387:43681..43764 -
CDS_11387	CDS	CDS_11387:43451..43531 -
CDS_11387	CDS	CDS_11387:43162..43305 -
CDS_11387	CDS	CDS_11387:42731..42865 -
CDS_11387	CDS	CDS_11387:42301..42453 -
CDS_11387	CDS	CDS_11387:41940..42047 -
jgi.p\|Nanoce1779_2\|626471	gene	jgi.p\|Nanoce1779_2\|626471:34266..41759 -
jgi.p\|Nanoce1779_2\|626471	mRNA	jgi.p\|Nanoce1779_2\|626471:34266..41759 -
CDS_11386	CDS	CDS_11386:40920..41606 -
CDS_11386	CDS	CDS_11386:40566..40730 -
CDS_11386	CDS	CDS_11386:40229..40375 -
CDS_11386	CDS	CDS_11386:40097..40130 -
CDS_11386	CDS	CDS_11386:39849..39982 -
CDS_11386	CDS	CDS_11386:39513..39602 -
CDS_11386	CDS	CDS_11386:39156..39311 -
CDS_11386	CDS	CDS_11386:38641..38763 -
CDS_11386	CDS	CDS_11386:38173..38463 -
jgi.p\|Nanoce1779_2\|675318	gene	jgi.p\|Nanoce1779_2\|675318:9113..15259 +
jgi.p\|Nanoce1779_2\|675318	mRNA	jgi.p\|Nanoce1779_2\|675318:9113..15259 +
CDS_11379	CDS	CDS_11379:9146..9290 +
CDS_11379	CDS	CDS_11379:9467..9656 +
CDS_11379	CDS	CDS_11379:9822..10107 +
CDS_11379	CDS	CDS_11379:10225..10407 +
CDS_11379	CDS	CDS_11379:10576..10654 +
CDS_11379	CDS	CDS_11379:10772..10911 +
CDS_11379	CDS	CDS_11379:11023..11121 +
CDS_11379	CDS	CDS_11379:11378..11429 +
CDS_11379	CDS	CDS_11379:11581..11698 +
CDS_11379	CDS	CDS_11379:11813..11927 +
CDS_11379	CDS	CDS_11379:12040..12161 +
CDS_11379	CDS	CDS_11379:12427..12554 +
CDS_11379	CDS	CDS_11379:12654..12756 +
CDS_11379	CDS	CDS_11379:12877..12954 +
CDS_11379	CDS	CDS_11379:13210..13293 +
CDS_11379	CDS	CDS_11379:13435..13548 +
CDS_11379	CDS	CDS_11379:15122..15185 +
jgi.p\|Nanoce1779_2\|675320	gene	jgi.p\|Nanoce1779_2\|675320:19146..22448 +
jgi.p\|Nanoce1779_2\|675320	mRNA	jgi.p\|Nanoce1779_2\|675320:19146..22448 +
CDS_11381	CDS	CDS_11381:19191..19479 +
CDS_11381	CDS	CDS_11381:19747..19880 +
CDS_11381	CDS	CDS_11381:19996..20245 +
CDS_11381	CDS	CDS_11381:20479..20622 +
CDS_11381	CDS	CDS_11381:20848..21017 +
CDS_11381	CDS	CDS_11381:21233..21313 +
CDS_11381	CDS	CDS_11381:21462..21553 +
CDS_11381	CDS	CDS_11381:21773..22226 +
jgi.p\|Nanoce1779_2\|675322	gene	jgi.p\|Nanoce1779_2\|675322:25587..33058 -
jgi.p\|Nanoce1779_2\|675322	mRNA	jgi.p\|Nanoce1779_2\|675322:25587..33058 -
CDS_11383	CDS	CDS_11383:32114..32659 -
CDS_11383	CDS	CDS_11383:31603..31944 -
CDS_11383	CDS	CDS_11383:31287..31448 -
CDS_11383	CDS	CDS_11383:31098..31178 -
CDS_11383	CDS	CDS_11383:30740..30834 -
CDS_11383	CDS	CDS_11383:30368..30528 -
CDS_11383	CDS	CDS_11383:30104..30240 -
CDS_11383	CDS	CDS_11383:29862..29998 -
CDS_11383	CDS	CDS_11383:29469..29545 -
CDS_11383	CDS	CDS_11383:27132..27696 -
CDS_11383	CDS	CDS_11383:26460..26691 -
CDS_11383	CDS	CDS_11383:26130..26346 -
CDS_11383	CDS	CDS_11383:25644..25792 -
jgi.p\|Nanoce1779_2\|451246	polypeptide	jgi.p\|Nanoce1779_2\|451246:16213..19069 -
jgi.p\|Nanoce1779_2\|451462	polypeptide	jgi.p\|Nanoce1779_2\|451462:34562..36658 -
jgi.p\|Nanoce1779_2\|451828	polypeptide	jgi.p\|Nanoce1779_2\|451828:46626..46859 -
jgi.p\|Nanoce1779_2\|534411	polypeptide	jgi.p\|Nanoce1779_2\|534411:4539..4892 -
jgi.p\|Nanoce1779_2\|570324	polypeptide	jgi.p\|Nanoce1779_2\|570324:3285..3737 -
jgi.p\|Nanoce1779_2\|614941	polypeptide	jgi.p\|Nanoce1779_2\|614941:387..1175 -
jgi.p\|Nanoce1779_2\|614944	polypeptide	jgi.p\|Nanoce1779_2\|614944:2323..2562 -
jgi.p\|Nanoce1779_2\|614950	polypeptide	jgi.p\|Nanoce1779_2\|614950:5619..8258 +
jgi.p\|Nanoce1779_2\|614977	polypeptide	jgi.p\|Nanoce1779_2\|614977:23244..23765 -
jgi.p\|Nanoce1779_2\|614991	polypeptide	jgi.p\|Nanoce1779_2\|614991:33392..33975 +
jgi.p\|Nanoce1779_2\|615014	polypeptide	jgi.p\|Nanoce1779_2\|615014:41940..46068 -
jgi.p\|Nanoce1779_2\|626471	polypeptide	jgi.p\|Nanoce1779_2\|626471:38173..41606 -
jgi.p\|Nanoce1779_2\|675318	polypeptide	jgi.p\|Nanoce1779_2\|675318:9146..15185 +
jgi.p\|Nanoce1779_2\|675320	polypeptide	jgi.p\|Nanoce1779_2\|675320:19191..22226 +
jgi.p\|Nanoce1779_2\|675322	polypeptide	jgi.p\|Nanoce1779_2\|675322:25644..32659 -
ncniL009	syntenic_region	ncniL009:319..46342 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications