jgi.p|Nanoce1779_2|451828, mRNA_11388 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|451828
Unique NamemRNA_11388
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length427
Alignment locationscaffold_94:46479..46905 -

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Properties
Property NameValue
TranscriptId451914
TrackFilteredModels2
ProteinId451828
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:46479..46905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|451828gene_11388Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|451828mRNA_11388-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11388CDS_11388Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11388 ID=mRNA_11388|Name=jgi.p|Nanoce1779_2|451828|organism=Nannochloropsis oceanica|type=mRNA|length=427bp
CTTCCTTCCTAGGTTCTTCGCATGGGCCAGCCGTTACGACCCTTCCATGC
GTTACTCCAACCCGGGATCGTCCGTTCAGATGCAGACGTTTTTGTTCGGC
GGCACGAAGGATAAGAAGGGCGAGGTTATTCCCAAGAGCAGGACCTTCAA
GGTATCTAGCTGCCTTGCCCTCCCTCCCTCCTTTCCTCCCTCCCTCCTTT
CCTTTTTCCCTCCCTTGATTTCCCGTTGTCTCGACCCTACCCTCCCTCCC
TCCCTCCCTCCCTCAGATCGAGATTCCTGAACGCCATCGTCTCGAAATTG
AGGCCGTGCTGGACACGCAAGAGCAAGAAGCCGCAGGCCTTCCTTCCTCC
CCCCCTCCCTCCCCCCCCCCTCCCCTCCCCCCCTTCCTCCTCCTCCACCA
CCACTACCACCACCTCCTCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|451828

>mRNA_11388-protein ID=mRNA_11388-protein|Name=jgi.p|Nanoce1779_2|451828|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MRYSNPGSSVQMQTFLFGGTKDKKGEVIPKSRTFKVSSCLALPPSFPPSL
LSFFPPLISRCLDPTLPPSLPPSDRDS*
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mRNA from alignment at scaffold_94:46479..46905-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11388 ID=mRNA_11388|Name=jgi.p|Nanoce1779_2|451828|organism=Nannochloropsis oceanica|type=mRNA|length=427bp|location=Sequence derived from alignment at scaffold_94:46479..46905- (Nannochloropsis oceanica)
CTTCCTTCCTAGGTTCTTCGCATGGGCCAGCCGTTACGACCCTTCCATGC
GTTACTCCAACCCGGGATCGTCCGTTCAGATGCAGACGTTTTTGTTCGGC
GGCACGAAGGATAAGAAGGGCGAGGTTATTCCCAAGAGCAGGACCTTCAA
GGTATCTAGCTGCCTTGCCCTCCCTCCCTCCTTTCCTCCCTCCCTCCTTT
CCTTTTTCCCTCCCTTGATTTCCCGTTGTCTCGACCCTACCCTCCCTCCC
TCCCTCCCTCCCTCAGATCGAGATTCCTGAACGCCATCGTCTCGAAATTG
AGGCCGTGCTGGACACGCAAGAGCAAGAAGCCGCAGGCCTTCCTTCCTCC
CCCCCTCCCTCCCCCCCCCCTCCCCTCCCCCCCTTCCTCCTCCTCCACCA
CCACTACCACCACCTCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_94:46479..46905-

>mRNA_11388 ID=mRNA_11388|Name=jgi.p|Nanoce1779_2|451828|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_94:46479..46905- (Nannochloropsis oceanica)
ATGCGTTACTCCAACCCGGGATCGTCCGTTCAGATGCAGACGTTTTTGTT
CGGCGGCACGAAGGATAAGAAGGGCGAGGTTATTCCCAAGAGCAGGACCT
TCAAGGTATCTAGCTGCCTTGCCCTCCCTCCCTCCTTTCCTCCCTCCCTC
CTTTCCTTTTTCCCTCCCTTGATTTCCCGTTGTCTCGACCCTACCCTCCC
TCCCTCCCTCCCTCCCTCAGATCGAGATTCCTGA
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Synonyms
Publications