jgi.p|Nanoce1779_2|534411, mRNA_11377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|534411
Unique NamemRNA_11377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length354
Alignment locationscaffold_94:4539..4892 -

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Properties
Property NameValue
TranscriptId534497
TrackFilteredModels2
ProteinId534411
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:4539..4892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534411gene_11377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11377CDS_11377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|534411mRNA_11377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11377 ID=mRNA_11377|Name=jgi.p|Nanoce1779_2|534411|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGGTACGTGGCTGCTACGAAACGACTGAAAATCCAAGCGGTCCATTTCC
CGCTCTTATTTTGATTCCTTTCTATGATGGCCCTGAAAGTTTGCCTCCGC
TTCCCTCCCTCCCTCCCTCTCTCACCCCCCCCCCTCCCTCCCTAGGTTAT
GAGACCCCCAGCCTCAACGACAGGCTTTACCTGCATTTCCGTGGATTTCA
TCGCATCGAAAATCTCAATCCTTATTCTAACTTGAAAGCCTTGTGGCTGG
ATTCCAATGGGCTGACGGAGGAAGGGATAGGGGAGGGATTGAGAGGATTG
ACCCATTTGAGGTGTTTATACTTACAGAACAATTTGTTGGAGAGCCTAGG
AGGG
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protein sequence of jgi.p|Nanoce1779_2|534411

>mRNA_11377-protein ID=mRNA_11377-protein|Name=jgi.p|Nanoce1779_2|534411|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MVRGCYETTENPSGPFPALILIPFYDGPESLPPLPSLPPSLTPPPPSLGY
ETPSLNDRLYLHFRGFHRIENLNPYSNLKALWLDSNGLTEEGIGEGLRGL
THLRCLYLQNNLLESLGG
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mRNA from alignment at scaffold_94:4539..4892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11377 ID=mRNA_11377|Name=jgi.p|Nanoce1779_2|534411|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at scaffold_94:4539..4892- (Nannochloropsis oceanica)
ATGGTACGTGGCTGCTACGAAACGACTGAAAATCCAAGCGGTCCATTTCC
CGCTCTTATTTTGATTCCTTTCTATGATGGCCCTGAAAGTTTGCCTCCGC
TTCCCTCCCTCCCTCCCTCTCTCACCCCCCCCCCTCCCTCCCTAGGTTAT
GAGACCCCCAGCCTCAACGACAGGCTTTACCTGCATTTCCGTGGATTTCA
TCGCATCGAAAATCTCAATCCTTATTCTAACTTGAAAGCCTTGTGGCTGG
ATTCCAATGGGCTGACGGAGGAAGGGATAGGGGAGGGATTGAGAGGATTG
ACCCATTTGAGGTGTTTATACTTACAGAACAATTTGTTGGAGAGCCTAGG
AGGG
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Coding sequence (CDS) from alignment at scaffold_94:4539..4892-

>mRNA_11377 ID=mRNA_11377|Name=jgi.p|Nanoce1779_2|534411|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_94:4539..4892- (Nannochloropsis oceanica)
ATGGTACGTGGCTGCTACGAAACGACTGAAAATCCAAGCGGTCCATTTCC
CGCTCTTATTTTGATTCCTTTCTATGATGGCCCTGAAAGTTTGCCTCCGC
TTCCCTCCCTCCCTCCCTCTCTCACCCCCCCCCCTCCCTCCCTAGGTTAT
GAGACCCCCAGCCTCAACGACAGGCTTTACCTGCATTTCCGTGGATTTCA
TCGCATCGAAAATCTCAATCCTTATTCTAACTTGAAAGCCTTGTGGCTGG
ATTCCAATGGGCTGACGGAGGAAGGGATAGGGGAGGGATTGAGAGGATTG
ACCCATTTGAGGTGTTTATACTTACAGAACAATTTGTTGGAGAGCCTAGG
AGGG
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Synonyms
Publications