jgi.p|Nanoce1779_2|614944, mRNA_11375 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614944
Unique NamemRNA_11375
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length412
Alignment locationscaffold_94:2205..2616 -

Link to JBrowse

Properties
Property NameValue
TranscriptId615030
TrackFilteredModels2
ProteinId614944
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:2205..2616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614944gene_11375Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614944mRNA_11375-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11375CDS_11375Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11375 ID=mRNA_11375|Name=jgi.p|Nanoce1779_2|614944|organism=Nannochloropsis oceanica|type=mRNA|length=412bp
CCTCCCCTGCCCCTTCCCTCCGCCTCCTCCCCTTCCTTCGTCGCCAAAGG
TAATATGGGTCCTGGTCAAGGCCTCCCTCATCTCCGCCACCTCCAGCCGT
CGGGCCTCATACTCCTTCTTATACTCTCCTGTCTTTCCTTCCTCTCTCAC
GGCCTCCTCTTCCTCAATAAGGTGGTTCATGTCACGGGAGGAGGAGCTGT
AGTCATTCTTGTCAGTCCCCAAACTAAAATGTGTCTTGTTGTGTCTATCT
TTGATGCATGCTCCGGCGGCGGGAATGGGAGTAGAATATGCTGAATAAGG
TGACGAGGAAGAAGAGACGAAGGCGACAGTCGTCCGTTTCCCGTAAGTAT
CATCCTCTTCCTCCTCCTCCTCCCAGTCGCCGGCATCGCTTTCATCCTGG
TAGCCGTACTCT
back to top

protein sequence of jgi.p|Nanoce1779_2|614944

>mRNA_11375-protein ID=mRNA_11375-protein|Name=jgi.p|Nanoce1779_2|614944|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MGPGQGLPHLRHLQPSGLILLLILSCLSFLSHGLLFLNKVVHVTGGGAVV
ILVSPQTKMCLVVSIFDACSGGGNGSRIC*
back to top

mRNA from alignment at scaffold_94:2205..2616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11375 ID=mRNA_11375|Name=jgi.p|Nanoce1779_2|614944|organism=Nannochloropsis oceanica|type=mRNA|length=412bp|location=Sequence derived from alignment at scaffold_94:2205..2616- (Nannochloropsis oceanica)
CCTCCCCTGCCCCTTCCCTCCGCCTCCTCCCCTTCCTTCGTCGCCAAAGG
TAATATGGGTCCTGGTCAAGGCCTCCCTCATCTCCGCCACCTCCAGCCGT
CGGGCCTCATACTCCTTCTTATACTCTCCTGTCTTTCCTTCCTCTCTCAC
GGCCTCCTCTTCCTCAATAAGGTGGTTCATGTCACGGGAGGAGGAGCTGT
AGTCATTCTTGTCAGTCCCCAAACTAAAATGTGTCTTGTTGTGTCTATCT
TTGATGCATGCTCCGGCGGCGGGAATGGGAGTAGAATATGCTGAATAAGG
TGACGAGGAAGAAGAGACGAAGGCGACAGTCGTCCGTTTCCCGTAAGTAT
CATCCTCTTCCTCCTCCTCCTCCCAGTCGCCGGCATCGCTTTCATCCTGG
TAGCCGTACTCT
back to top

Coding sequence (CDS) from alignment at scaffold_94:2205..2616-

>mRNA_11375 ID=mRNA_11375|Name=jgi.p|Nanoce1779_2|614944|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_94:2205..2616- (Nannochloropsis oceanica)
ATGGGTCCTGGTCAAGGCCTCCCTCATCTCCGCCACCTCCAGCCGTCGGG
CCTCATACTCCTTCTTATACTCTCCTGTCTTTCCTTCCTCTCTCACGGCC
TCCTCTTCCTCAATAAGGTGGTTCATGTCACGGGAGGAGGAGCTGTAGTC
ATTCTTGTCAGTCCCCAAACTAAAATGTGTCTTGTTGTGTCTATCTTTGA
TGCATGCTCCGGCGGCGGGAATGGGAGTAGAATATGCTGA
back to top
Synonyms
Publications