jgi.p|Nanoce1779_2|614941, mRNA_11374 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614941
Unique NamemRNA_11374
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length803
Alignment locationscaffold_94:318..1336 -

Link to JBrowse

Properties
Property NameValue
TranscriptId615027
TrackFilteredModels2
ProteinId614941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:318..1336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614941gene_11374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614941mRNA_11374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11374CDS_11374Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11374 ID=mRNA_11374|Name=jgi.p|Nanoce1779_2|614941|organism=Nannochloropsis oceanica|type=mRNA|length=803bp
AGGCCGGGCTCTAGACCCTTTGGTGGAGGAGGTGCCTTGCTTGTTCGCAT
CTGATCGAGCCAGAGGTGGTATTATATCCACGTCTGCAGTGTCTCTCCCT
GTCTCCCTGTCTCTCCTCTTGCCCTCCTTCCCAATCTCCTGAGCCAAGTA
CCACAAAAGCTATGTCGACAATGAACGCTGCCCTGAAGGGCATGAAGCTG
TTGCAGCAACGGATCCCCCACAAAAAGAAGACGGTGGAGCCCATCAAGCA
GTCACGGTGGACCATCTTGAAGGGCGACCAAGTCGAGGTAATTAATGGCC
CGGAAAAGGGCAAACAAGGCACTGTCCTCAAGGTCCTCCGGGCTGCCAAC
CGTCTCATCATCGAAGGCGTGAACGTCAGAAGGCGCACCCAAAAACCCAC
CCCCAACGGACAAGCAGGCAAGATTATCACCTACCCCGCCGCACTGAATG
TTTCCAACGTCTCCTTACTCGATCCCGAAAGCAAGCAGCCTACCAAGGTC
TCCCGTCGTTTCTTGGAAGATGGGACACGGGTCCGGGTGGGGAGGAGGAG
TGGCGTCGTTCTGCCCAAGCCCGAGTGGAAGAGAGAGAATATCAGGAGGG
CGGCAGTGGGGGGAAAAGACACCCTGCCCGCAGATGTGTACGAAGTAACA
TGGGAGGAATACGCGGCGCCGGAGAGGAAGGAGAAGAAGAAGGAAGGGCC
TACATTCGCGGCAGCCGCAGCCACGAAAGAATGATAAAGGGGAAAAACAT
GAACAAAAGGAAAATAGGAACAGAAAGAAAGAAGAAAGAATTGGATAAAT
TGA
back to top

protein sequence of jgi.p|Nanoce1779_2|614941

>mRNA_11374-protein ID=mRNA_11374-protein|Name=jgi.p|Nanoce1779_2|614941|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSTMNAALKGMKLLQQRIPHKKKTVEPIKQSRWTILKGDQVEVINGPEKG
KQGTVLKVLRAANRLIIEGVNVRRRTQKPTPNGQAGKIITYPAALNVSNV
SLLDPESKQPTKVSRRFLEDGTRVRVGRRSGVVLPKPEWKRENIRRAAVG
GKDTLPADVYEVTWEEYAAPERKEKKKEGPTFAAAAATKE*
back to top

mRNA from alignment at scaffold_94:318..1336-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11374 ID=mRNA_11374|Name=jgi.p|Nanoce1779_2|614941|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp|location=Sequence derived from alignment at scaffold_94:318..1336- (Nannochloropsis oceanica)
AGGCCGGGCTCTAGACCCTTTGGTGGAGGAGGTGCCTTGCTTGTTCGCAT
CTGATCGAGCCAGAGGTGGTATTATATCCACGTCTGCAGTGTCTCTCCCT
GTCTCCCTGTCTCTCCTCTTGCCCTCCTTCCCAATCTCCTGAGCCAAGTA
CCACAAAAGCTATGTCGACAATGAACGCTGCCCTGAAGGGCATGAAGCTG
TTGCAGCAACGGATCCCCCACAAAAAGAAGACGGTGGAGCCCATCAAGCA
GTCACGGTTAGTGGGAAGGGAGGGAAGGGAGGAGGGAGGGATGGAGGGTC
AAGGGGAAGCAGGATGAGCGCATGTAGGCGATGCACCCTCATGCGCAGGT
GGTGAGGCGCGCGGTGTGGAGTGGCGGGAAGGCTCGCAGTGTGGAGTAGC
GGGAGGTCTCTGCACGTGCTGGCAGGCACTCACTTTCATGCTTTCCATGC
ACACACATATACACACACACAGGTGGACCATCTTGAAGGGCGACCAAGTC
GAGGTAATTAATGGCCCGGAAAAGGGCAAACAAGGCACTGTCCTCAAGGT
CCTCCGGGCTGCCAACCGTCTCATCATCGAAGGCGTGAACGTCAGAAGGC
GCACCCAAAAACCCACCCCCAACGGACAAGCAGGCAAGATTATCACCTAC
CCCGCCGCACTGAATGTTTCCAACGTCTCCTTACTCGATCCCGAAAGCAA
GCAGCCTACCAAGGTCTCCCGTCGTTTCTTGGAAGATGGGACACGGGTCC
GGGTGGGGAGGAGGAGTGGCGTCGTTCTGCCCAAGCCCGAGTGGAAGAGA
GAGAATATCAGGAGGGCGGCAGTGGGGGGAAAAGACACCCTGCCCGCAGA
TGTGTACGAAGTAACATGGGAGGAATACGCGGCGCCGGAGAGGAAGGAGA
AGAAGAAGGAAGGGCCTACATTCGCGGCAGCCGCAGCCACGAAAGAATGA
TAAAGGGGAAAAACATGAACAAAAGGAAAATAGGAACAGAAAGAAAGAAG
AAAGAATTGGATAAATTGA
back to top

Coding sequence (CDS) from alignment at scaffold_94:318..1336-

>mRNA_11374 ID=mRNA_11374|Name=jgi.p|Nanoce1779_2|614941|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_94:318..1336- (Nannochloropsis oceanica)
GGTGGACCATCTTGAAGGGCGACCAAGTCGAGGTAATTAATGGCCCGGAA
AAGGGCAAACAAGGCACTGTCCTCAAGGTCCTCCGGGCTGCCAACCGTCT
CATCATCGAAGGCGTGAACGTCAGAAGGCGCACCCAAAAACCCACCCCCA
ACGGACAAGCAGGCAAGATTATCACCTACCCCGCCGCACTGAATGTTTCC
AACGTCTCCTTACTCGATCCCGAAAGCAAGCAGCCTACCAAGGTCTCCCG
TCGTTTCTTGGAAGATGGGACACGGGTCCGGGTGGGGAGGAGGAGTGGCG
TCGTTCTGCCCAAGCCCGAGTGGAAGAGAGAGAATATCAGGAGGGCGGCA
GTGGGGGGAAAAGACACCCTGCCCGCAGATGTGTACGAAGTAACATGGGA
GGAATACGCGGCGCCGGAGAGGAAGGAGAAGAAGAAGGAAGGGCCTACAT
TCGCGGCAGCCGCAGCCACGAAAGAATGAATGTCGACAATGAACGCTGCC
CTGAAGGGCATGAAGCTGTTGCAGCAACGGATCCCCCACAAAAAGAAGAC
GGTGGAGCCCATCAAGCAGTCACGGTGGACCATCTTGAAGGGCGACCAAG
TCGAGGTAATTAATGGCCCGGAAAAGGGCAAACAAGGCACTGTCCTCAAG
GTCCTCCGGGCTGCCAACCGTCTCATCATCGAAGGCGTGAACGTCAGAAG
GCGCACCCAAAAACCCACCCCCAACGGACAAGCAGGCAAGATTATCACCT
ACCCCGCCGCACTGAATGTTTCCAACGTCTCCTTACTCGATCCCGAAAGC
AAGCAGCCTACCAAGGTCTCCCGTCGTTTCTTGGAAGATGGGACACGGGT
CCGGGTGGGGAGGAGGAGTGGCGTCGTTCTGCCCAAGCCCGAGTGGAAGA
GAGAGAATATCAGGAGGGCGGCAGTGGGGGGAAAAGACACCCTGCCCGCA
GATGTGTACGAAGTAACATGGGAGGAATACGCGGCGCCGGAGAGGAAGGA
GAAGAAGAAGGAAGGGCCTACATTCGCGGCAGCCGCAGCCACGAAAGAAT
GAATGTCGACAATGAACGCTGCCCTGAAGGGCATGAAGCTGTTGCAGCAA
CGGATCCCCCACAAAAAGAAGACGGTGGAGCCCATCAAGCAGTCAC
back to top
Synonyms
Publications