jgi.p|Nanoce1779_2|614991, mRNA_11384 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614991
Unique NamemRNA_11384
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_94:33197..34229 +

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Properties
Property NameValue
TranscriptId615077
TrackFilteredModels2
ProteinId614991
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:33197..34229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614991gene_11384Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614991mRNA_11384-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11384CDS_11384Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11384 ID=mRNA_11384|Name=jgi.p|Nanoce1779_2|614991|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
GTTGTCACGTTCCTTCGTTGAAAACCCCCATGCAAGGCACCAACTCCGAA
GCATATTGCCAACACTCTCCTTTCCTTCCTCCCTCCCTTTCCCTGCGCAG
CACGAGGAAAACGGGAACACACGCTTTGACCACATGGCTAGCACTACGAC
AACGTTCAACGTGGGCATGACTTGCGAAGGTAAATATAGACACACATGCA
CACAACGCGGATTACCCGAAAATTATTTATGACCCGGCCGCAGTTCACAC
ACGCCACCATATGCTCTCTCTCCCACACACCTGCAGGCTGCTCCAATGCT
ATCAGGCGTATCCTTGGGAAGATGGAAGGCATCACTTCTATCGAGACCGA
CTTGGAGGCAAAAAAGGTAGTAGTAGTCCACGCAGAGGACAAGGTCAAAG
CAAGTGATATACTGGCCGCCTTGGAAAAGTGGGGAGAGGCTGCCGGGAAG
GATGTGGCCTTGGCGTGAAGGAGTTAAAAAGGGAGGGAGGGAGAAAACAG
TAGCAAGAGCAACTTGTAGAGAGGAAAGGGAGGAAAGTATTCACAAACAT
AAAAGCAGTCGAAGTTACAGATCATACACAGGGGTAGAGGAGAGAGTGAG
AGGCACACACACACGCATACGCTCGTACACGTTTTCAAGGAAGGAAGGAG
GGAAGGAGGAGGCATGGAAGGAGGACATGAGATTTGTTCATCGATGAAGT
TGTAAGCTAGGCAAGTATTAAG
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protein sequence of jgi.p|Nanoce1779_2|614991

>mRNA_11384-protein ID=mRNA_11384-protein|Name=jgi.p|Nanoce1779_2|614991|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MHTTRITRKLFMTRPQFTHATICSLSHTPAGCSNAIRRILGKMEGITSIE
TDLEAKKVVVVHAEDKVKASDILAALEKWGEAAGKDVALA*
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mRNA from alignment at scaffold_94:33197..34229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11384 ID=mRNA_11384|Name=jgi.p|Nanoce1779_2|614991|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_94:33197..34229+ (Nannochloropsis oceanica)
GTTGTCACGTTCCTTCGTTGAAAACCCCCATGCAAGGCACCAACTCCGAA
GCATATTGCCAACACTCTCCTTTCCTTCCTCCCTCCCTTTCCCTGCGCAG
CACGAGGAAAACGGGAACACACGCTTTGACCACATGGCTAGCACTACGAC
AACGTTCAACGTGGGCATGACTTGCGAAGGTAAATATAGACACACATGCA
CACAACGCGGATTACCCGAAAATTATTTATGACCCGGCCGCAGTTCACAC
ACGCCACCATATGCTCTCTCTCCCACACACCTGCAGGCTGCTCCAATGCT
ATCAGGCGTATCCTTGGGAAGATGGAAGGTGCGTCGTTGTCAGAAGGGAC
TTTGCTCGCATCAGCTAACGCACGGGTCACACACCAGCGGGATCCGATCG
CCCTCCCTCCTCTCCTCCCTCCCTCCCTCCCTCCCTCTTTCTCTCCCTCC
CTCCTCTCTCCTAAAAGAATCGGCCTCTGTCCCTCACTGCTCCAGCTTGT
GTATGGTACCACGCCTGTTCTATCTTCGCCAGTCTACTGGATGTGCTCTT
CACCCTCCCCTCTGTTTACTCATTTCTCCCTCCCTCCCGGTCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCCTCCAAAGGCATCACTTCT
ATCGAGACCGACTTGGAGGCAAAAAAGGTAGTAGTAGTCCACGCAGAGGA
CAAGGTCAAAGCAAGTGATATACTGGCCGCCTTGGAAAAGTGGGGAGAGG
CTGCCGGGAAGGATGTGGCCTTGGCGTGAAGGAGTTAAAAAGGGAGGGAG
GGAGAAAACAGTAGCAAGAGCAACTTGTAGAGAGGAAAGGGAGGAAAGTA
TTCACAAACATAAAAGCAGTCGAAGTTACAGATCATACACAGGGGTAGAG
GAGAGAGTGAGAGGCACACACACACGCATACGCTCGTACACGTTTTCAAG
GAAGGAAGGAGGGAAGGAGGAGGCATGGAAGGAGGACATGAGATTTGTTC
ATCGATGAAGTTGTAAGCTAGGCAAGTATTAAG
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Coding sequence (CDS) from alignment at scaffold_94:33197..34229+

>mRNA_11384 ID=mRNA_11384|Name=jgi.p|Nanoce1779_2|614991|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_94:33197..34229+ (Nannochloropsis oceanica)
ATGCACACAACGCGGATTACCCGAAAATTATTTATGACCCGGCCGCAGTT
CACACACGCCACCATATGCTCTCTCTCCCACACACCTGCAGGCTGCTCCA
ATGCTATCAGGCGTATCCTTGGGAAGATGGAAGGCATCACTTCTATCGAG
ACCGACTTGGAGGCAAAAAAGGTAGTAGTAGTCCACGCAGAGGACAAGGT
CAAAGCAAGTGATATACTGGCCGCCTTGGAAAAGTGGGGAGAGGCTGCCG
GGAAGGATGTGGCCTTGGCGTGAATGCACACAACGCGGATTACCCGAAAA
TTATTTATGACCCGGCCGCAGTTCACACACGCCACCATATGCTCTCTCTC
CCACACACCTGCAGGCTGCTCCAATGCTATCAGGCGTATCCTTGGGAAGA
TGGAAGGCATCACTTCTATCGAGACCGACTTGGAGGCAAAAAAGGTAGTA
GTAGTCCACGCAGAGGACAAGGTCAAAGCAAGTGATATACTGGCCGCCTT
GGAAAAGTGGGGAGAGGCTGCCGGGAAGGATGTGGCCTTGGCGTGA
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Synonyms
Publications