scaffold_87, scaffold_87 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_87
Unique Name	scaffold_87
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	51963
Alignment location	jgi.p\|Nanoce1779_2\|433091:2906..4312 +
Alignment location	jgi.p\|Nanoce1779_2\|433091:2906..4312 +
Alignment location	CDS_11178:3004..3759 +
Alignment location	jgi.p\|Nanoce1779_2\|433183:8327..10705 +
Alignment location	jgi.p\|Nanoce1779_2\|433183:8327..10705 +
Alignment location	CDS_11181:8857..8962 +
Alignment location	CDS_11181:9610..9698 +
Alignment location	CDS_11181:9846..10528 +
Alignment location	CDS_11181:10572..10596 +
Alignment location	jgi.p\|Nanoce1779_2\|433522:18360..19187 +
Alignment location	jgi.p\|Nanoce1779_2\|433522:18360..19187 +
Alignment location	CDS_11185:18397..18573 +
Alignment location	CDS_11185:18755..19135 +
Alignment location	jgi.p\|Nanoce1779_2\|433690:39062..39696 +
Alignment location	jgi.p\|Nanoce1779_2\|433690:39062..39696 +
Alignment location	CDS_11190:39172..39612 +
Alignment location	jgi.p\|Nanoce1779_2\|433789:43450..44667 -
Alignment location	jgi.p\|Nanoce1779_2\|433789:43450..44667 -
Alignment location	CDS_11193:44337..44504 -
Alignment location	CDS_11193:43933..44213 -
Alignment location	CDS_11193:43556..43769 -
Alignment location	jgi.p\|Nanoce1779_2\|561313:39227..42499 -
Alignment location	jgi.p\|Nanoce1779_2\|561313:39227..42499 -
Alignment location	CDS_11191:41887..42009 -
Alignment location	CDS_11191:41369..41776 -
Alignment location	CDS_11191:40624..41149 -
Alignment location	CDS_11191:39781..40484 -
Alignment location	jgi.p\|Nanoce1779_2\|614483:4399..5572 +
Alignment location	jgi.p\|Nanoce1779_2\|614483:4399..5572 +
Alignment location	CDS_11179:4446..4498 +
Alignment location	CDS_11179:4580..4681 +
Alignment location	CDS_11179:4854..5082 +
Alignment location	CDS_11179:5350..5430 +
Alignment location	jgi.p\|Nanoce1779_2\|614485:5720..7586 +
Alignment location	jgi.p\|Nanoce1779_2\|614485:5720..7586 +
Alignment location	CDS_11180:5723..5786 +
Alignment location	CDS_11180:5922..6048 +
Alignment location	CDS_11180:6232..6398 +
Alignment location	CDS_11180:6551..6651 +
Alignment location	CDS_11180:6782..6861 +
Alignment location	CDS_11180:7147..7510 +
Alignment location	jgi.p\|Nanoce1779_2\|614492:11711..14234 +
Alignment location	jgi.p\|Nanoce1779_2\|614492:11711..14234 +
Alignment location	CDS_11182:11808..12290 +
Alignment location	CDS_11182:12630..12778 +
Alignment location	CDS_11182:12946..13085 +
Alignment location	CDS_11182:13231..13343 +
Alignment location	CDS_11182:13456..13539 +
Alignment location	CDS_11182:13677..13793 +
Alignment location	CDS_11182:13985..14212 +
Alignment location	jgi.p\|Nanoce1779_2\|614497:14560..16925 -
Alignment location	jgi.p\|Nanoce1779_2\|614497:14560..16925 -
Alignment location	CDS_11183:16744..16751 -
Alignment location	CDS_11183:16429..16588 -
Alignment location	CDS_11183:16187..16249 -
Alignment location	CDS_11183:15916..16013 -
Alignment location	CDS_11183:15660..15793 -
Alignment location	CDS_11183:15369..15469 -
Alignment location	CDS_11183:15105..15183 -
Alignment location	CDS_11183:14861..14919 -
Alignment location	CDS_11183:14593..14703 -
Alignment location	jgi.p\|Nanoce1779_2\|614502:17437..18340 +
Alignment location	jgi.p\|Nanoce1779_2\|614502:17437..18340 +
Alignment location	CDS_11184:17475..17506 +
Alignment location	CDS_11184:17750..17850 +
Alignment location	CDS_11184:18003..18100 +
Alignment location	jgi.p\|Nanoce1779_2\|614508:20300..27005 -
Alignment location	jgi.p\|Nanoce1779_2\|614508:20300..27005 -
Alignment location	CDS_11187:26520..26883 -
Alignment location	CDS_11187:26265..26410 -
Alignment location	CDS_11187:25939..26049 -
Alignment location	CDS_11187:25665..25775 -
Alignment location	CDS_11187:25285..25411 -
Alignment location	CDS_11187:25001..25131 -
Alignment location	CDS_11187:24755..24848 -
Alignment location	CDS_11187:24345..24449 -
Alignment location	CDS_11187:24104..24198 -
Alignment location	CDS_11187:23826..23951 -
Alignment location	CDS_11187:23560..23661 -
Alignment location	CDS_11187:23291..23425 -
Alignment location	CDS_11187:22976..23091 -
Alignment location	CDS_11187:22642..22774 -
Alignment location	CDS_11187:22258..22422 -
Alignment location	jgi.p\|Nanoce1779_2\|614515:29892..34734 +
Alignment location	jgi.p\|Nanoce1779_2\|614515:29892..34734 +
Alignment location	CDS_11188:30044..30107 +
Alignment location	CDS_11188:30267..30559 +
Alignment location	CDS_11188:30680..30757 +
Alignment location	CDS_11188:30858..30904 +
Alignment location	CDS_11188:30993..31097 +
Alignment location	CDS_11188:31246..31390 +
Alignment location	CDS_11188:31551..31676 +
Alignment location	CDS_11188:31830..31905 +
Alignment location	CDS_11188:33870..33953 +
Alignment location	CDS_11188:34056..34327 +
Alignment location	CDS_11188:34418..34549 +
Alignment location	jgi.p\|Nanoce1779_2\|614531:42524..43247 +
Alignment location	jgi.p\|Nanoce1779_2\|614531:42524..43247 +
Alignment location	CDS_11192:42541..43110 +
Alignment location	jgi.p\|Nanoce1779_2\|614537:51387..51760 +
Alignment location	jgi.p\|Nanoce1779_2\|614537:51387..51760 +
Alignment location	CDS_11195:51529..51720 +
Alignment location	jgi.p\|Nanoce1779_2\|634506:49686..50729 -
Alignment location	jgi.p\|Nanoce1779_2\|634506:49686..50729 -
Alignment location	CDS_11194:50597..50714 -
Alignment location	CDS_11194:50327..50458 -
Alignment location	CDS_11194:49827..50188 -
Alignment location	jgi.p\|Nanoce1779_2\|643826:35901..38826 +
Alignment location	jgi.p\|Nanoce1779_2\|643826:35901..38826 +
Alignment location	CDS_11189:35901..35972 +
Alignment location	CDS_11189:36142..36249 +
Alignment location	CDS_11189:36476..36617 +
Alignment location	CDS_11189:36729..36871 +
Alignment location	CDS_11189:37144..37215 +
Alignment location	CDS_11189:37369..37569 +
Alignment location	CDS_11189:37740..37855 +
Alignment location	CDS_11189:38006..38169 +
Alignment location	CDS_11189:38377..38503 +
Alignment location	CDS_11189:38560..38649 +
Alignment location	CDS_11189:38811..38826 +
Alignment location	jgi.p\|Nanoce1779_2\|433091:3004..3759 +
Alignment location	jgi.p\|Nanoce1779_2\|433183:8857..10596 +
Alignment location	jgi.p\|Nanoce1779_2\|433522:18397..19135 +
Alignment location	jgi.p\|Nanoce1779_2\|433690:39172..39612 +
Alignment location	jgi.p\|Nanoce1779_2\|433789:43556..44504 -
Alignment location	jgi.p\|Nanoce1779_2\|561313:39781..42009 -
Alignment location	jgi.p\|Nanoce1779_2\|614483:4446..5430 +
Alignment location	jgi.p\|Nanoce1779_2\|614485:5723..7510 +
Alignment location	jgi.p\|Nanoce1779_2\|614492:11808..14212 +
Alignment location	jgi.p\|Nanoce1779_2\|614497:14593..16751 -
Alignment location	jgi.p\|Nanoce1779_2\|614502:17475..18100 +
Alignment location	jgi.p\|Nanoce1779_2\|614508:22258..26883 -
Alignment location	jgi.p\|Nanoce1779_2\|614515:30044..34549 +
Alignment location	jgi.p\|Nanoce1779_2\|614531:42541..43110 +
Alignment location	jgi.p\|Nanoce1779_2\|614537:51529..51720 +
Alignment location	jgi.p\|Nanoce1779_2\|634506:49827..50714 -
Alignment location	jgi.p\|Nanoce1779_2\|643826:35901..38826 +
Alignment location	ncniL005:2907..50729 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|433091	gene	jgi.p\|Nanoce1779_2\|433091:2906..4312 +
jgi.p\|Nanoce1779_2\|433091	mRNA	jgi.p\|Nanoce1779_2\|433091:2906..4312 +
CDS_11178	CDS	CDS_11178:3004..3759 +
jgi.p\|Nanoce1779_2\|433183	gene	jgi.p\|Nanoce1779_2\|433183:8327..10705 +
jgi.p\|Nanoce1779_2\|433183	mRNA	jgi.p\|Nanoce1779_2\|433183:8327..10705 +
CDS_11181	CDS	CDS_11181:8857..8962 +
CDS_11181	CDS	CDS_11181:9610..9698 +
CDS_11181	CDS	CDS_11181:9846..10528 +
CDS_11181	CDS	CDS_11181:10572..10596 +
jgi.p\|Nanoce1779_2\|433522	gene	jgi.p\|Nanoce1779_2\|433522:18360..19187 +
jgi.p\|Nanoce1779_2\|433522	mRNA	jgi.p\|Nanoce1779_2\|433522:18360..19187 +
CDS_11185	CDS	CDS_11185:18397..18573 +
CDS_11185	CDS	CDS_11185:18755..19135 +
jgi.p\|Nanoce1779_2\|433690	gene	jgi.p\|Nanoce1779_2\|433690:39062..39696 +
jgi.p\|Nanoce1779_2\|433690	mRNA	jgi.p\|Nanoce1779_2\|433690:39062..39696 +
CDS_11190	CDS	CDS_11190:39172..39612 +
jgi.p\|Nanoce1779_2\|433789	gene	jgi.p\|Nanoce1779_2\|433789:43450..44667 -
jgi.p\|Nanoce1779_2\|433789	mRNA	jgi.p\|Nanoce1779_2\|433789:43450..44667 -
CDS_11193	CDS	CDS_11193:44337..44504 -
CDS_11193	CDS	CDS_11193:43933..44213 -
CDS_11193	CDS	CDS_11193:43556..43769 -
jgi.p\|Nanoce1779_2\|561313	gene	jgi.p\|Nanoce1779_2\|561313:39227..42499 -
jgi.p\|Nanoce1779_2\|561313	mRNA	jgi.p\|Nanoce1779_2\|561313:39227..42499 -
CDS_11191	CDS	CDS_11191:41887..42009 -
CDS_11191	CDS	CDS_11191:41369..41776 -
CDS_11191	CDS	CDS_11191:40624..41149 -
CDS_11191	CDS	CDS_11191:39781..40484 -
jgi.p\|Nanoce1779_2\|614483	gene	jgi.p\|Nanoce1779_2\|614483:4399..5572 +
jgi.p\|Nanoce1779_2\|614483	mRNA	jgi.p\|Nanoce1779_2\|614483:4399..5572 +
CDS_11179	CDS	CDS_11179:4446..4498 +
CDS_11179	CDS	CDS_11179:4580..4681 +
CDS_11179	CDS	CDS_11179:4854..5082 +
CDS_11179	CDS	CDS_11179:5350..5430 +
jgi.p\|Nanoce1779_2\|614485	gene	jgi.p\|Nanoce1779_2\|614485:5720..7586 +
jgi.p\|Nanoce1779_2\|614485	mRNA	jgi.p\|Nanoce1779_2\|614485:5720..7586 +
CDS_11180	CDS	CDS_11180:5723..5786 +
CDS_11180	CDS	CDS_11180:5922..6048 +
CDS_11180	CDS	CDS_11180:6232..6398 +
CDS_11180	CDS	CDS_11180:6551..6651 +
CDS_11180	CDS	CDS_11180:6782..6861 +
CDS_11180	CDS	CDS_11180:7147..7510 +
jgi.p\|Nanoce1779_2\|614492	gene	jgi.p\|Nanoce1779_2\|614492:11711..14234 +
jgi.p\|Nanoce1779_2\|614492	mRNA	jgi.p\|Nanoce1779_2\|614492:11711..14234 +
CDS_11182	CDS	CDS_11182:11808..12290 +
CDS_11182	CDS	CDS_11182:12630..12778 +
CDS_11182	CDS	CDS_11182:12946..13085 +
CDS_11182	CDS	CDS_11182:13231..13343 +
CDS_11182	CDS	CDS_11182:13456..13539 +
CDS_11182	CDS	CDS_11182:13677..13793 +
CDS_11182	CDS	CDS_11182:13985..14212 +
jgi.p\|Nanoce1779_2\|614497	gene	jgi.p\|Nanoce1779_2\|614497:14560..16925 -
jgi.p\|Nanoce1779_2\|614497	mRNA	jgi.p\|Nanoce1779_2\|614497:14560..16925 -
CDS_11183	CDS	CDS_11183:16744..16751 -
CDS_11183	CDS	CDS_11183:16429..16588 -
CDS_11183	CDS	CDS_11183:16187..16249 -
CDS_11183	CDS	CDS_11183:15916..16013 -
CDS_11183	CDS	CDS_11183:15660..15793 -
CDS_11183	CDS	CDS_11183:15369..15469 -
CDS_11183	CDS	CDS_11183:15105..15183 -
CDS_11183	CDS	CDS_11183:14861..14919 -
CDS_11183	CDS	CDS_11183:14593..14703 -
jgi.p\|Nanoce1779_2\|614502	gene	jgi.p\|Nanoce1779_2\|614502:17437..18340 +
jgi.p\|Nanoce1779_2\|614502	mRNA	jgi.p\|Nanoce1779_2\|614502:17437..18340 +
CDS_11184	CDS	CDS_11184:17475..17506 +
CDS_11184	CDS	CDS_11184:17750..17850 +
CDS_11184	CDS	CDS_11184:18003..18100 +
jgi.p\|Nanoce1779_2\|614508	gene	jgi.p\|Nanoce1779_2\|614508:20300..27005 -
jgi.p\|Nanoce1779_2\|614508	mRNA	jgi.p\|Nanoce1779_2\|614508:20300..27005 -
CDS_11187	CDS	CDS_11187:26520..26883 -
CDS_11187	CDS	CDS_11187:26265..26410 -
CDS_11187	CDS	CDS_11187:25939..26049 -
CDS_11187	CDS	CDS_11187:25665..25775 -
CDS_11187	CDS	CDS_11187:25285..25411 -
CDS_11187	CDS	CDS_11187:25001..25131 -
CDS_11187	CDS	CDS_11187:24755..24848 -
CDS_11187	CDS	CDS_11187:24345..24449 -
CDS_11187	CDS	CDS_11187:24104..24198 -
CDS_11187	CDS	CDS_11187:23826..23951 -
CDS_11187	CDS	CDS_11187:23560..23661 -
CDS_11187	CDS	CDS_11187:23291..23425 -
CDS_11187	CDS	CDS_11187:22976..23091 -
CDS_11187	CDS	CDS_11187:22642..22774 -
CDS_11187	CDS	CDS_11187:22258..22422 -
jgi.p\|Nanoce1779_2\|614515	gene	jgi.p\|Nanoce1779_2\|614515:29892..34734 +
jgi.p\|Nanoce1779_2\|614515	mRNA	jgi.p\|Nanoce1779_2\|614515:29892..34734 +
CDS_11188	CDS	CDS_11188:30044..30107 +
CDS_11188	CDS	CDS_11188:30267..30559 +
CDS_11188	CDS	CDS_11188:30680..30757 +
CDS_11188	CDS	CDS_11188:30858..30904 +
CDS_11188	CDS	CDS_11188:30993..31097 +
CDS_11188	CDS	CDS_11188:31246..31390 +
CDS_11188	CDS	CDS_11188:31551..31676 +
CDS_11188	CDS	CDS_11188:31830..31905 +
CDS_11188	CDS	CDS_11188:33870..33953 +
CDS_11188	CDS	CDS_11188:34056..34327 +
CDS_11188	CDS	CDS_11188:34418..34549 +
jgi.p\|Nanoce1779_2\|614531	gene	jgi.p\|Nanoce1779_2\|614531:42524..43247 +
jgi.p\|Nanoce1779_2\|614531	mRNA	jgi.p\|Nanoce1779_2\|614531:42524..43247 +
CDS_11192	CDS	CDS_11192:42541..43110 +
jgi.p\|Nanoce1779_2\|614537	gene	jgi.p\|Nanoce1779_2\|614537:51387..51760 +
jgi.p\|Nanoce1779_2\|614537	mRNA	jgi.p\|Nanoce1779_2\|614537:51387..51760 +
CDS_11195	CDS	CDS_11195:51529..51720 +
jgi.p\|Nanoce1779_2\|634506	gene	jgi.p\|Nanoce1779_2\|634506:49686..50729 -
jgi.p\|Nanoce1779_2\|634506	mRNA	jgi.p\|Nanoce1779_2\|634506:49686..50729 -
CDS_11194	CDS	CDS_11194:50597..50714 -
CDS_11194	CDS	CDS_11194:50327..50458 -
CDS_11194	CDS	CDS_11194:49827..50188 -
jgi.p\|Nanoce1779_2\|643826	gene	jgi.p\|Nanoce1779_2\|643826:35901..38826 +
jgi.p\|Nanoce1779_2\|643826	mRNA	jgi.p\|Nanoce1779_2\|643826:35901..38826 +
CDS_11189	CDS	CDS_11189:35901..35972 +
CDS_11189	CDS	CDS_11189:36142..36249 +
CDS_11189	CDS	CDS_11189:36476..36617 +
CDS_11189	CDS	CDS_11189:36729..36871 +
CDS_11189	CDS	CDS_11189:37144..37215 +
CDS_11189	CDS	CDS_11189:37369..37569 +
CDS_11189	CDS	CDS_11189:37740..37855 +
CDS_11189	CDS	CDS_11189:38006..38169 +
CDS_11189	CDS	CDS_11189:38377..38503 +
CDS_11189	CDS	CDS_11189:38560..38649 +
CDS_11189	CDS	CDS_11189:38811..38826 +
jgi.p\|Nanoce1779_2\|433091	polypeptide	jgi.p\|Nanoce1779_2\|433091:3004..3759 +
jgi.p\|Nanoce1779_2\|433183	polypeptide	jgi.p\|Nanoce1779_2\|433183:8857..10596 +
jgi.p\|Nanoce1779_2\|433522	polypeptide	jgi.p\|Nanoce1779_2\|433522:18397..19135 +
jgi.p\|Nanoce1779_2\|433690	polypeptide	jgi.p\|Nanoce1779_2\|433690:39172..39612 +
jgi.p\|Nanoce1779_2\|433789	polypeptide	jgi.p\|Nanoce1779_2\|433789:43556..44504 -
jgi.p\|Nanoce1779_2\|561313	polypeptide	jgi.p\|Nanoce1779_2\|561313:39781..42009 -
jgi.p\|Nanoce1779_2\|614483	polypeptide	jgi.p\|Nanoce1779_2\|614483:4446..5430 +
jgi.p\|Nanoce1779_2\|614485	polypeptide	jgi.p\|Nanoce1779_2\|614485:5723..7510 +
jgi.p\|Nanoce1779_2\|614492	polypeptide	jgi.p\|Nanoce1779_2\|614492:11808..14212 +
jgi.p\|Nanoce1779_2\|614497	polypeptide	jgi.p\|Nanoce1779_2\|614497:14593..16751 -
jgi.p\|Nanoce1779_2\|614502	polypeptide	jgi.p\|Nanoce1779_2\|614502:17475..18100 +
jgi.p\|Nanoce1779_2\|614508	polypeptide	jgi.p\|Nanoce1779_2\|614508:22258..26883 -
jgi.p\|Nanoce1779_2\|614515	polypeptide	jgi.p\|Nanoce1779_2\|614515:30044..34549 +
jgi.p\|Nanoce1779_2\|614531	polypeptide	jgi.p\|Nanoce1779_2\|614531:42541..43110 +
jgi.p\|Nanoce1779_2\|614537	polypeptide	jgi.p\|Nanoce1779_2\|614537:51529..51720 +
jgi.p\|Nanoce1779_2\|634506	polypeptide	jgi.p\|Nanoce1779_2\|634506:49827..50714 -
jgi.p\|Nanoce1779_2\|643826	polypeptide	jgi.p\|Nanoce1779_2\|643826:35901..38826 +
ncniL005	syntenic_region	ncniL005:2907..50729 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications