jgi.p|Nanoce1779_2|433690, mRNA_11190 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|433690
Unique NamemRNA_11190
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length635
Alignment locationscaffold_87:39062..39696 +

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Properties
Property NameValue
TranscriptId433776
TrackFilteredModels2
ProteinId433690
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:39062..39696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|433690gene_11190Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|433690mRNA_11190-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11190CDS_11190Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11190 ID=mRNA_11190|Name=jgi.p|Nanoce1779_2|433690|organism=Nannochloropsis oceanica|type=mRNA|length=635bp
CTCCTTCACTCCTTCCCTCCCTCCCTTCCTCCCTCCCTCCTCTTTTTTCT
CGCGGCTGTAGACGAGGTAGGAGGAAGTAAAGGAAGCGGCTTGAGAACAG
TTAAGAGTCCATGAGAGTAGACAAGAAATGTAAGACGTCTGCCACGTTTT
TTGGCGCGAAATCGGGGGAAAGTTTTCCTTCTGTATATTCTTTTCCTTTT
CCTTCTTCTGCTTCTTCTTTTATCTTTTTTTTTATTTTTTTGTTCTTGTT
ATTGTCGTCGGTACTGTGTGCGTCGCCGACTGGAGAAGTCTCTGCTCTCC
TCTTTCTGCACACAAGCCTTTTTAACCATCCTTTGATTATCCTCTCTCTC
TTCCTCAAATCTCTTTCCCCCGCTCTTTTTCTCTCTCTCCTCCTCCTCTC
TCTCGTCTCTCTATCTCTTTCTCTTTCCTCTCTCTCGCATACTTTCTCGG
TATCTCTCTCTCTCTCTGTCTTTCTCTCTCACTCTCTCTCGGTGTTTCTT
GCCCTCTTCTCCCTTTCCATGACTGAACAGGCATTTCTCGAACCGCTGTA
AATCCTTGCTATCCCATCGACCCACCCTCAAGACCAAGAGGCGCATGGAG
CCACTCCTCTTCTCTGGAGAGCAAATGACCAATAA
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protein sequence of jgi.p|Nanoce1779_2|433690

>mRNA_11190-protein ID=mRNA_11190-protein|Name=jgi.p|Nanoce1779_2|433690|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MRVDKKCKTSATFFGAKSGESFPSVYSFPFPSSASSFIFFFIFLFLLLSS
VLCASPTGEVSALLFLHTSLFNHPLIILSLFLKSLSPALFLSLLLLSLVS
LSLSLSSLSHTFSVSLSLSVFLSHSLSVFLALFSLSMTEQAFLEPL*
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mRNA from alignment at scaffold_87:39062..39696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11190 ID=mRNA_11190|Name=jgi.p|Nanoce1779_2|433690|organism=Nannochloropsis oceanica|type=mRNA|length=635bp|location=Sequence derived from alignment at scaffold_87:39062..39696+ (Nannochloropsis oceanica)
CTCCTTCACTCCTTCCCTCCCTCCCTTCCTCCCTCCCTCCTCTTTTTTCT
CGCGGCTGTAGACGAGGTAGGAGGAAGTAAAGGAAGCGGCTTGAGAACAG
TTAAGAGTCCATGAGAGTAGACAAGAAATGTAAGACGTCTGCCACGTTTT
TTGGCGCGAAATCGGGGGAAAGTTTTCCTTCTGTATATTCTTTTCCTTTT
CCTTCTTCTGCTTCTTCTTTTATCTTTTTTTTTATTTTTTTGTTCTTGTT
ATTGTCGTCGGTACTGTGTGCGTCGCCGACTGGAGAAGTCTCTGCTCTCC
TCTTTCTGCACACAAGCCTTTTTAACCATCCTTTGATTATCCTCTCTCTC
TTCCTCAAATCTCTTTCCCCCGCTCTTTTTCTCTCTCTCCTCCTCCTCTC
TCTCGTCTCTCTATCTCTTTCTCTTTCCTCTCTCTCGCATACTTTCTCGG
TATCTCTCTCTCTCTCTGTCTTTCTCTCTCACTCTCTCTCGGTGTTTCTT
GCCCTCTTCTCCCTTTCCATGACTGAACAGGCATTTCTCGAACCGCTGTA
AATCCTTGCTATCCCATCGACCCACCCTCAAGACCAAGAGGCGCATGGAG
CCACTCCTCTTCTCTGGAGAGCAAATGACCAATAA
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Coding sequence (CDS) from alignment at scaffold_87:39062..39696+

>mRNA_11190 ID=mRNA_11190|Name=jgi.p|Nanoce1779_2|433690|organism=Nannochloropsis oceanica|type=CDS|length=441bp|location=Sequence derived from alignment at scaffold_87:39062..39696+ (Nannochloropsis oceanica)
ATGAGAGTAGACAAGAAATGTAAGACGTCTGCCACGTTTTTTGGCGCGAA
ATCGGGGGAAAGTTTTCCTTCTGTATATTCTTTTCCTTTTCCTTCTTCTG
CTTCTTCTTTTATCTTTTTTTTTATTTTTTTGTTCTTGTTATTGTCGTCG
GTACTGTGTGCGTCGCCGACTGGAGAAGTCTCTGCTCTCCTCTTTCTGCA
CACAAGCCTTTTTAACCATCCTTTGATTATCCTCTCTCTCTTCCTCAAAT
CTCTTTCCCCCGCTCTTTTTCTCTCTCTCCTCCTCCTCTCTCTCGTCTCT
CTATCTCTTTCTCTTTCCTCTCTCTCGCATACTTTCTCGGTATCTCTCTC
TCTCTCTGTCTTTCTCTCTCACTCTCTCTCGGTGTTTCTTGCCCTCTTCT
CCCTTTCCATGACTGAACAGGCATTTCTCGAACCGCTGTAA
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Synonyms
Publications