jgi.p|Nanoce1779_2|614502, mRNA_11184 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614502
Unique NamemRNA_11184
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length509
Alignment locationscaffold_87:17437..18340 +

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Properties
Property NameValue
TranscriptId614588
TrackFilteredModels2
ProteinId614502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:17437..18340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614502gene_11184Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614502mRNA_11184-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11184CDS_11184Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11184 ID=mRNA_11184|Name=jgi.p|Nanoce1779_2|614502|organism=Nannochloropsis oceanica|type=mRNA|length=509bp
ACAGGCATCACAGCACAACAGCCACAACTTAAGTTCACATGTTTACCCGT
AAAGGCGTCCTAGTCACCTGTGACGTTCCTATGAAGCAACTCATTAAGCA
CCTAGATCCAAGTAATCGCGTTATTCTCCAAGACTTGGACGAGACGCATC
TCTTCGTAGATGCCAATGCGGTGGGCGCCATCAAGCGAGAGATCGAGTTA
TTCGTAGATAAGCATGTGTATGCCCCTACTCCTGAAGAAGAGTCCGGGGG
CGTCCGCTCTGGGAAGTGAGAATGAGTGTGTGTGGGTGCGTGCACGGTTT
TCTTGAAAGAAGGGATGTCTACGGCAAGAGGACGAGTGTACGTGTGTGTG
TGTGTGTGGATGTGGATGAGTGGCTTTGCGTGTGATGTAAGTGAGAACCA
CGCAGTGTACAAAGTTATCCCAAGTAAATACAAGATATAGAAAAAAGTAA
ACGACAAACCCCGCGCCCCATCCCTTTCAAATGTCGCTCGTGCATAGCAC
GGCGATCAC
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protein sequence of jgi.p|Nanoce1779_2|614502

>mRNA_11184-protein ID=mRNA_11184-protein|Name=jgi.p|Nanoce1779_2|614502|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MFTRKGVLVTCDVPMKQLIKHLDPSNRVILQDLDETHLFVDANAVGAIKR
EIELFVDKHVYAPTPEEESGGVRSGK*
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mRNA from alignment at scaffold_87:17437..18340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11184 ID=mRNA_11184|Name=jgi.p|Nanoce1779_2|614502|organism=Nannochloropsis oceanica|type=mRNA|length=904bp|location=Sequence derived from alignment at scaffold_87:17437..18340+ (Nannochloropsis oceanica)
ACAGGCATCACAGCACAACAGCCACAACTTAAGTTCACATGTTTACCCGT
AAAGGCGTCCTAGTCACCTGGTAGGTTCAGCACTCGAACTGATGATACAA
GATGAGGAGGGTGGCAGAGGGGGTGATCCTTGAATGCGGAGTAAACCGTG
CCTCCATACGCCCGTCTTAGTCTAGGCCTCGCTCTTTCTCACGCCGTGGA
TGCACGGTCACTGCATGTCCTCATTAGTATCCCAGCTTGCGTGACTGACC
ATTCACATCCATCCCTCTCGTCCTCTTTCCCATCCTCTCGTCCCTTTCCT
GGCCTCTCCATAGTGACGTTCCTATGAAGCAACTCATTAAGCACCTAGAT
CCAAGTAATCGCGTTATTCTCCAAGACTTGGACGAGACGCATCTCTTCGT
AGATGCCAATGCGGGTACGTTGTTGCTCTCTCCTCCTATCTGAGCCACCT
TCGCTCCCGACGCGCATTACCCGTTATCCCACGTACCTCTGTGTTTCTTA
TACCTATTGTTATTACAACCCTAAAATTTGATAAATCATATTTCTATTTT
TCTGTTAATCATCCAGTGGGCGCCATCAAGCGAGAGATCGAGTTATTCGT
AGATAAGCATGTGTATGCCCCTACTCCTGAAGAAGAGTCCGGGGGCGTCC
GCTCTGGGAAGTGAGAATGAGTGTGTGTGGGTGCGTGCACGGTTTTCTTG
AAAGAAGGGATGTCTACGGCAAGAGGACGAGTGTACGTGTGTGTGTGTGT
GTGGATGTGGATGAGTGGCTTTGCGTGTGATGTAAGTGAGAACCACGCAG
TGTACAAAGTTATCCCAAGTAAATACAAGATATAGAAAAAAGTAAACGAC
AAACCCCGCGCCCCATCCCTTTCAAATGTCGCTCGTGCATAGCACGGCGA
TCAC
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Coding sequence (CDS) from alignment at scaffold_87:17437..18340+

>mRNA_11184 ID=mRNA_11184|Name=jgi.p|Nanoce1779_2|614502|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_87:17437..18340+ (Nannochloropsis oceanica)
ATGTTTACCCGTAAAGGCGTCCTAGTCACCTGTGACGTTCCTATGAAGCA
ACTCATTAAGCACCTAGATCCAAGTAATCGCGTTATTCTCCAAGACTTGG
ACGAGACGCATCTCTTCGTAGATGCCAATGCGGTGGGCGCCATCAAGCGA
GAGATCGAGTTATTCGTAGATAAGCATGTGTATGCCCCTACTCCTGAAGA
AGAGTCCGGGGGCGTCCGCTCTGGGAAGTGAATGTTTACCCGTAAAGGCG
TCCTAGTCACCTGTGACGTTCCTATGAAGCAACTCATTAAGCACCTAGAT
CCAAGTAATCGCGTTATTCTCCAAGACTTGGACGAGACGCATCTCTTCGT
AGATGCCAATGCGGTGGGCGCCATCAAGCGAGAGATCGAGTTATTCGTAG
ATAAGCATGTGTATGCCCCTACTCCTGAAGAAGAGTCCGGGGGCGTCCGC
TCTGGGAAGTGAATGTTTACCCGTAAAGGCGTCCTAGTCACCTGTGACGT
TCCTATGAAGCAACTCATTAAGCACCTAGATCCAAGTAATCGCGTTATTC
TCCAAGACTTGGACGAGACGCATCTCTTCGTAGATGCCAATGCGGTGGGC
GCCATCAAGCGAGAGATCGAGTTATTCGTAGATAAGCATGTGTATGCCCC
TACTCCTGAAGAAGAGTCCGGGGGCGTCCGCTCTGGGAAGTGA
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Synonyms
Publications