jgi.p|Nanoce1779_2|433522, mRNA_11185 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|433522
Unique NamemRNA_11185
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length647
Alignment locationscaffold_87:18360..19187 +

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Properties
Property NameValue
TranscriptId433608
TrackFilteredModels2
ProteinId433522
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:18360..19187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|433522gene_11185Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|433522mRNA_11185-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11185CDS_11185Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11185 ID=mRNA_11185|Name=jgi.p|Nanoce1779_2|433522|organism=Nannochloropsis oceanica|type=mRNA|length=647bp
TCCAGTCAAACGGTAATGCAGTATTCTTTTGCAGCGCATGCCAGCCCCGC
CGTCACTCTTTCCCTCCTATTCTCTCTCCCTTCCTCCTCCGCGCCGGATC
CTTTGCTCGCGTGCACTCTGCTGCCGCCACTACCCTGACACTCTCCTGTT
TCTTCTTCTCGATTCTGACTTCTACTCTTGTTCTTACCCTTATCCCTGTT
TTCCTATCATTCTTGTCGTCACTTCATTCGTGGTGATGGTGGGTGGTGGT
GCTGGTGGTGCAGGAGGAGGAAGAAGTTTTCCCTTCGGTAGGACCGTGTG
TATGATGACGGTCCTTCCTCTTTCCCTCCCTGATAGTCAAACGCTCTTTC
TCTCTCTCTCGGTGTTTCTCGCTCTCCTTCTCTTTCCCTCCTTCATGGTC
AATCTCTCTCTCTCCCACACACACCCTCCCGTTTCTTTTCCTTCCCCGCC
TTCTCTACCTTTTCTCTCAAAGTCTGCTTCTTCTGCATTTAGGTATTCGT
CGTCGTCATCATTTCATTCTGCTTCTTCTTCTTCTTCTTCTGCTGCTGCT
GCTCTCGCTGCTCATGCTGCTATTGTTGCTGCCGCTCGCATTTAAGACAA
ATTGCTCTATAAAAATGGGTCATAAACATTCGCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|433522

>mRNA_11185-protein ID=mRNA_11185-protein|Name=jgi.p|Nanoce1779_2|433522|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MPAPPSLFPSYSLSLPPPRRILCSRALCCRHYPDTLLFLLLDSDFYSCSY
PYPCFPIILVVTSFVVMVGGGAGGAGGGRSFPFGRTVCMMTVLPLSLPDS
QTLFLSLSVFLALLLFPSFMVNLSLSHTHPPVSFPSPPSLPFLSKSASSA
FRYSSSSSFHSASSSSSSAAAALAAHAAIVAAARI*
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mRNA from alignment at scaffold_87:18360..19187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11185 ID=mRNA_11185|Name=jgi.p|Nanoce1779_2|433522|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_87:18360..19187+ (Nannochloropsis oceanica)
TCCAGTCAAACGGTAATGCAGTATTCTTTTGCAGCGCATGCCAGCCCCGC
CGTCACTCTTTCCCTCCTATTCTCTCTCCCTTCCTCCTCCGCGCCGGATC
CTTTGCTCGCGTGCACTCTGCTGCCGCCACTACCCTGACACTCTCCTGTT
TCTTCTTCTCGATTCTGACTTCTACTCTTGTTCTTACCCTTATCCCTGTT
TTCCTATCATTCTTGTCTATATCAATCTTGCCGTTATTGTTCATGATGTG
GTTAGAGGGGAGGCGGGTGATGGTGGTGATTGCCGCTTCAAGGCGAACAT
CCACCACCTTTAAAGTGATCTCATGTCCTTTGAGGTGGCGTCACCCGTAA
CCCCCTCCCTTCCTCGCCCCTTCCCTCTCTCCCTTCCTTTCTCTCGTCGT
CACTTCATTCGTGGTGATGGTGGGTGGTGGTGCTGGTGGTGCAGGAGGAG
GAAGAAGTTTTCCCTTCGGTAGGACCGTGTGTATGATGACGGTCCTTCCT
CTTTCCCTCCCTGATAGTCAAACGCTCTTTCTCTCTCTCTCGGTGTTTCT
CGCTCTCCTTCTCTTTCCCTCCTTCATGGTCAATCTCTCTCTCTCCCACA
CACACCCTCCCGTTTCTTTTCCTTCCCCGCCTTCTCTACCTTTTCTCTCA
AAGTCTGCTTCTTCTGCATTTAGGTATTCGTCGTCGTCATCATTTCATTC
TGCTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCTCTCGCTGCTCATGCTG
CTATTGTTGCTGCCGCTCGCATTTAAGACAAATTGCTCTATAAAAATGGG
TCATAAACATTCGCCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_87:18360..19187+

>mRNA_11185 ID=mRNA_11185|Name=jgi.p|Nanoce1779_2|433522|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_87:18360..19187+ (Nannochloropsis oceanica)
ATGCCAGCCCCGCCGTCACTCTTTCCCTCCTATTCTCTCTCCCTTCCTCC
TCCGCGCCGGATCCTTTGCTCGCGTGCACTCTGCTGCCGCCACTACCCTG
ACACTCTCCTGTTTCTTCTTCTCGATTCTGACTTCTACTCTTGTTCTTAC
CCTTATCCCTGTTTTCCTATCATTCTTGTCGTCACTTCATTCGTGGTGAT
GGTGGGTGGTGGTGCTGGTGGTGCAGGAGGAGGAAGAAGTTTTCCCTTCG
GTAGGACCGTGTGTATGATGACGGTCCTTCCTCTTTCCCTCCCTGATAGT
CAAACGCTCTTTCTCTCTCTCTCGGTGTTTCTCGCTCTCCTTCTCTTTCC
CTCCTTCATGGTCAATCTCTCTCTCTCCCACACACACCCTCCCGTTTCTT
TTCCTTCCCCGCCTTCTCTACCTTTTCTCTCAAAGTCTGCTTCTTCTGCA
TTTAGGTATTCGTCGTCGTCATCATTTCATTCTGCTTCTTCTTCTTCTTC
TTCTGCTGCTGCTGCTCTCGCTGCTCATGCTGCTATTGTTGCTGCCGCTC
GCATTTAAATGCCAGCCCCGCCGTCACTCTTTCCCTCCTATTCTCTCTCC
CTTCCTCCTCCGCGCCGGATCCTTTGCTCGCGTGCACTCTGCTGCCGCCA
CTACCCTGACACTCTCCTGTTTCTTCTTCTCGATTCTGACTTCTACTCTT
GTTCTTACCCTTATCCCTGTTTTCCTATCATTCTTGTCGTCACTTCATTC
GTGGTGATGGTGGGTGGTGGTGCTGGTGGTGCAGGAGGAGGAAGAAGTTT
TCCCTTCGGTAGGACCGTGTGTATGATGACGGTCCTTCCTCTTTCCCTCC
CTGATAGTCAAACGCTCTTTCTCTCTCTCTCGGTGTTTCTCGCTCTCCTT
CTCTTTCCCTCCTTCATGGTCAATCTCTCTCTCTCCCACACACACCCTCC
CGTTTCTTTTCCTTCCCCGCCTTCTCTACCTTTTCTCTCAAAGTCTGCTT
CTTCTGCATTTAGGTATTCGTCGTCGTCATCATTTCATTCTGCTTCTTCT
TCTTCTTCTTCTGCTGCTGCTGCTCTCGCTGCTCATGCTGCTATTGTTGC
TGCCGCTCGCATTTAA
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Synonyms
Publications