jgi.p|Nanoce1779_2|433789, mRNA_11193 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|433789
Unique NamemRNA_11193
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length932
Alignment locationscaffold_87:43450..44667 -

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Properties
Property NameValue
TranscriptId433875
TrackFilteredModels2
ProteinId433789
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:43450..44667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|433789gene_11193Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|433789mRNA_11193-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11193CDS_11193Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11193 ID=mRNA_11193|Name=jgi.p|Nanoce1779_2|433789|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
CCCTCCTCTCCCCCTCCTTCCATTCACCCAGCAACTTCCTCTCTTCCTCT
CCCTCCCTCCCTCTTTCCCTACTTTCCCTTCCTCTCCCCCTCCTTCCCTC
CCTTCTTTCCTAGGAGGGCCCAACCCCAAGCACTTCACCTCCTGTCCCTC
TGCGGCCCGGGAGATGAGGCCTTGGCCGCTCGCCTCCTCCCGCTCGCCTT
TGCACAGGGTGGCCAGGGCAAGGGGGAGGATGAGGAAGGGAGGGAGGAAG
GGCAGGTGTTGCTGCGAATGTTCACGGCGGCCATGGGCCAAGAGGAGGCG
ATGCGCCAGTCGCGGCTGCTCTACGACCGAGGTCCGCCCTTCGCCCTCCC
CTCCCTCCTCCTCTCTCCTTCCCTATCCCCCCTCCCCACCCTCCTCCCCC
TCCCCCCTCACTGGCTCCTCCTCCCTCTCGCCTCCTCCTCCCCTTCCTCC
TCCTCGTCCTCCCTCGCCATTCGCCTCCTCTCCTCCTCCCTCTCCTTCCT
TCTCGGTCCTTGCGTGTGGCGAGCTTACACCTCCCTCCTACCTCCCGGCC
TCCTCCTCTACTACTGCATGTGTCTCTCTCTCTTTCCCCCAGAGGTCCTC
GGAGATGACAATATCATCTCCCATTTCCATGTCTTTGCTCGGCGATCCCT
TGCCCTCCTCCCCTCCCTCCCTCCCGCCCTCCCTCCCCTTCTTGAAGCCG
GCGCCGCTCTTGCCGAGTGCGACGAGAAGGTCGAGGACGAGAGAGGGAAG
GCGGGAGGAAAGGAGGGAGGGAGAGGGGTTGCTGAGGAAGAGAAGGGGCT
TCCGGGCTTGGTCGAGGACATATTGATCCGCGTCAGTGAGGGAGGGGGGA
GCGCACCTGCTGTATGGAGCCTTCGGTAGGTCTCTAGCCCTCTCTCCCTC
CCTCCCTCCCTTCCTCCTTCCCTTTCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|433789

>mRNA_11193-protein ID=mRNA_11193-protein|Name=jgi.p|Nanoce1779_2|433789|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MRPWPLASSRSPLHRVARARGRMRKGGRKGRCCCECSRRPWAKRRRCASR
GCSTTEVRPSPSPPSSSLLPYPPSPPSSPSPLTGSSSLSPPPPLPPPRPP
SPFASSPPPSPSFSVLACGELTPPSYLPASSSTTACVSLSFPQRSSEMTI
SSPISMSLLGDPLPSSPPSLPPSLPFLKPAPLLPSATRRSRTREGRREER
REGEGLLRKRRGFRAWSRTY*
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mRNA from alignment at scaffold_87:43450..44667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11193 ID=mRNA_11193|Name=jgi.p|Nanoce1779_2|433789|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at scaffold_87:43450..44667- (Nannochloropsis oceanica)
CCCTCCTCTCCCCCTCCTTCCATTCACCCAGCAACTTCCTCTCTTCCTCT
CCCTCCCTCCCTCTTTCCCTACTTTCCCTTCCTCTCCCCCTCCTTCCCTC
CCTTCTTTCCTAGGAGGGCCCAACCCCAAGCACTTCACCTCCTGTCCCTC
TGCGGCCCGGGAGATGAGGCCTTGGCCGCTCGCCTCCTCCCGCTCGCCTT
TGCACAGGGTGGCCAGGGCAAGGGGGAGGATGAGGAAGGGAGGGAGGAAG
GGCAGGTGTTGCTGCGAATGTTCACGGCGGCCATGGGCCAAGAGGAGGCG
ATGCGCCAGTCGCGGCTGCTCTACGACCGAGGTGAAGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGACACAGAAAGGATATT
CGCCGATATTTCAGCCTCTGACGTCACCTTCGAACCACTCCTCCTTACCC
TCAGGTCCGCCCTTCGCCCTCCCCTCCCTCCTCCTCTCTCCTTCCCTATC
CCCCCTCCCCACCCTCCTCCCCCTCCCCCCTCACTGGCTCCTCCTCCCTC
TCGCCTCCTCCTCCCCTTCCTCCTCCTCGTCCTCCCTCGCCATTCGCCTC
CTCTCCTCCTCCCTCTCCTTCCTTCTCGGTCCTTGCGTGTGGCGAGCTTA
CACCTCCCTCCTACCTCCCGGCCTCCTCCTCTACTACTGCATGTGTCTCT
CTCTCTTTCCCCCAGAGGTCCTCGGAGATGACAATGTAAAGACAGAGGGA
GGGAGGGAGGGAGGGAGGAAGGGAATAAGAAAATATATTACATATATATG
TATATATGTATATGTGCTATTTTCATGTGGATGCTTTGTTAAGTCCTCCT
CCCTCGCTCCCTCTTCTCTTCCTCCCTCCCTTTCTGCCTTCCTGACAGAT
CATCTCCCATTTCCATGTCTTTGCTCGGCGATCCCTTGCCCTCCTCCCCT
CCCTCCCTCCCGCCCTCCCTCCCCTTCTTGAAGCCGGCGCCGCTCTTGCC
GAGTGCGACGAGAAGGTCGAGGACGAGAGAGGGAAGGCGGGAGGAAAGGA
GGGAGGGAGAGGGGTTGCTGAGGAAGAGAAGGGGCTTCCGGGCTTGGTCG
AGGACATATTGATCCGCGTCAGTGAGGGAGGGGGGAGCGCACCTGCTGTA
TGGAGCCTTCGGTAGGTCTCTAGCCCTCTCTCCCTCCCTCCCTCCCTTCC
TCCTTCCCTTTCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_87:43450..44667-

>mRNA_11193 ID=mRNA_11193|Name=jgi.p|Nanoce1779_2|433789|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at scaffold_87:43450..44667- (Nannochloropsis oceanica)
ATCATCTCCCATTTCCATGTCTTTGCTCGGCGATCCCTTGCCCTCCTCCC
CTCCCTCCCTCCCGCCCTCCCTCCCCTTCTTGAAGCCGGCGCCGCTCTTG
CCGAGTGCGACGAGAAGGTCGAGGACGAGAGAGGGAAGGCGGGAGGAAAG
GAGGGAGGGAGAGGGGTTGCTGAGGAAGAGAAGGGGCTTCCGGGCTTGGT
CGAGGACATATTGAGTCCGCCCTTCGCCCTCCCCTCCCTCCTCCTCTCTC
CTTCCCTATCCCCCCTCCCCACCCTCCTCCCCCTCCCCCCTCACTGGCTC
CTCCTCCCTCTCGCCTCCTCCTCCCCTTCCTCCTCCTCGTCCTCCCTCGC
CATTCGCCTCCTCTCCTCCTCCCTCTCCTTCCTTCTCGGTCCTTGCGTGT
GGCGAGCTTACACCTCCCTCCTACCTCCCGGCCTCCTCCTCTACTACTGC
ATGTGTCTCTCTCTCTTTCCCCCAGAGGTCCTCGGAGATGACAATATGAG
GCCTTGGCCGCTCGCCTCCTCCCGCTCGCCTTTGCACAGGGTGGCCAGGG
CAAGGGGGAGGATGAGGAAGGGAGGGAGGAAGGGCAGGTGTTGCTGCGAA
TGTTCACGGCGGCCATGGGCCAAGAGGAGGCGATGCGCCAGTCGCGGCTG
CTCTACGACCGAGATCATCTCCCATTTCCATGTCTTTGCTCGGCGATCCC
TTGCCCTCCTCCCCTCCCTCCCTCCCGCCCTCCCTCCCCTTCTTGAAGCC
GGCGCCGCTCTTGCCGAGTGCGACGAGAAGGTCGAGGACGAGAGAGGGAA
GGCGGGAGGAAAGGAGGGAGGGAGAGGGGTTGCTGAGGAAGAGAAGGGGC
TTCCGGGCTTGGTCGAGGACATATTGAGTCCGCCCTTCGCCCTCCCCTCC
CTCCTCCTCTCTCCTTCCCTATCCCCCCTCCCCACCCTCCTCCCCCTCCC
CCCTCACTGGCTCCTCCTCCCTCTCGCCTCCTCCTCCCCTTCCTCCTCCT
CGTCCTCCCTCGCCATTCGCCTCCTCTCCTCCTCCCTCTCCTTCCTTCTC
GGTCCTTGCGTGTGGCGAGCTTACACCTCCCTCCTACCTCCCGGCCTCCT
CCTCTACTACTGCATGTGTCTCTCTCTCTTTCCCCCAGAGGTCCTCGGAG
ATGACAATATGAGGCCTTGGCCGCTCGCCTCCTCCCGCTCGCCTTTGCAC
AGGGTGGCCAGGGCAAGGGGGAGGATGAGGAAGGGAGGGAGGAAGGGCAG
GTGTTGCTGCGAATGTTCACGGCGGCCATGGGCCAAGAGGAGGCGATGCG
CCAGTCGCGGCTGCTCTACGACCGAGATCATCTCCCATTTCCATGTCTTT
GCTCGGCGATCCCTTGCCCTCCTCCCCTCCCTCCCTCCCGCCCTCCCTCC
CCTTCTTGAAGCCGGCGCCGCTCTTGCCGAGTGCGACGAGAAGGTCGAGG
ACGAGAGAGGGAAGGCGGGAGGAAAGGAGGGAGGGAGAGGGGTTGCTGAG
GAAGAGAAGGGGCTTCCGGGCTTGGTCGAGGACATATTGAGTCCGCCCTT
CGCCCTCCCCTCCCTCCTCCTCTCTCCTTCCCTATCCCCCCTCCCCACCC
TCCTCCCCCTCCCCCCTCACTGGCTCCTCCTCCCTCTCGCCTCCTCCTCC
CCTTCCTCCTCCTCGTCCTCCCTCGCCATTCGCCTCCTCTCCTCCTCCCT
CTCCTTCCTTCTCGGTCCTTGCGTGTGGCGAGCTTACACCTCCCTCCTAC
CTCCCGGCCTCCTCCTCTACTACTGCATGTGTCTCTCTCTCTTTCCCCCA
GAGGTCCTCGGAGATGACAATATGAGGCCTTGGCCGCTCGCCTCCTCCCG
CTCGCCTTTGCACAGGGTGGCCAGGGCAAGGGGGAGGATGAGGAAGGGAG
GGAGGAAGGGCAGGTGTTGCTGCGAATGTTCACGGCGGCCATGGGCCAAG
AGGAGGCGATGCGCCAGTCGCGGCTGCTCTACGACCGAG
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Synonyms
Publications