jgi.p|Nanoce1779_2|614485, mRNA_11180 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|614485
Unique Name	mRNA_11180
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	982
Alignment location	scaffold_87:5720..7586 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	614571
Track	FilteredModels2
ProteinId	614485

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_87	supercontig	scaffold_87:5720..7586 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614485	gene_11180	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614485	mRNA_11180-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11180	CDS_11180	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_87:5720..7586+
coding sequence from alignment at scaffold_87:5720..7586+

mRNA sequence

>mRNA_11180 ID=mRNA_11180|Name=jgi.p|Nanoce1779_2|614485|organism=Nannochloropsis oceanica|type=mRNA|length=982bp
CTGATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC
CGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGC
CTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCT
ACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCT
CATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAA
AGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGG
ATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGG
AATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAGTGATAG
ACCGCGCGCCCATCACTCAGTGGTCATACCTAGACGGCAGAGTCCTGCTG
ATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAA
CACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCT
ACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAG
GCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAG
GAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAA
GGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGG
GAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATA
CAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAA
CGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTC
CCTTAACTGCCAGCTGGAGTCAGAAACGTACGCCAAAAACGCCTACGGGG
CGCCTCGCACTGGTGCTGCCATTCCTACTTCT

protein sequence of jgi.p|Nanoce1779_2|614485

>mRNA_11180-protein ID=mRNA_11180-protein|Name=jgi.p|Nanoce1779_2|614485|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MFDDGSRVKAQCILAADGVHSVLRQKFVGDGKPREHGRLIYRSVIPYPAT
DREEMMGKINTEPSKLIHWQPCGEKNTYWAVIKKGGASPPIRRDGNPTRM
KQWLLHEYADFPDILGMIEATPAEGILERPVIDRAPITQWSYLDGRVLLI
GDAAHAMILSVGQGANTALEDAVYIASYLRDAYALFPKNKGKAVQAAFEA
FQNVRVKHCTDIQVRRRKRERKRGRKRGTKGGRERREEGKEGNEERKGRE
GKNRAQRKGRKGMYIYRLHHSLAISLSRKRTGTNVKYTAHQSSPSSFHFP
*

mRNA from alignment at scaffold_87:5720..7586+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11180 ID=mRNA_11180|Name=jgi.p|Nanoce1779_2|614485|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at scaffold_87:5720..7586+ (Nannochloropsis oceanica)
CTGATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC
CGATGGCGTGCACTCAGGTCGGGAGGGAGGGAGGGAGGGAGGAAGGGGGG
GGGGGGGGGGGGGGGATTGCCGATAGTGAGGGAGGGATCTTCACCTTGTC
CATCTGCCATATCATCCTTCCCTCACTCCCTCCCTTCCTCCCTCCCTCCC
AGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGC
GCCTCATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAG
ATGATGGGGAAGATTAACACTGAACCGAGGTAGGGAGGGAGGGAGGGAGG
GAGGGATTGTACGATGACGAGAGGACAAAAGGTGACGACCACCTGTGTCC
CCTCCCCTCCTCCTTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCC
TCCCTCCCTCCCTGGGTTCAGTGTTAATCTTCCCTTCCTCCTTTCCTCCC
TCCCTCCTTCAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACA
CGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGC
GACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGA
CTTTCCCGACATTCTGGGAATGATTGAAGGTAGGTGTAGGCATGCCTTCC
CTCCCTCCCTCCCTCGCACCCTCTTACCTTCCTGTGGCCTCGAAGTCGGC
AAGTGGTGCGAGGAGACTACCTATACTCCCTCCCATCCATGTCCCCTCCC
TCCCTCCCTCCCTCCCTCCCACCTTTCGCAGCGACGCCCGCAGAGGGCAT
CTTGGAGCGTCCAGTGATAGACCGCGCGCCCATCACTCAGTGGTCATACC
TAGACGGCAGAGTCCTGCTGATTGGCGATGCCGTGAGTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCCATCACGGACCATCGAGGACGCT
TCCTACTCTTTCTTCACCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCC
GTCCTCCTTCAGGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAA
CACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGTTGGCAC
GGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGGGTCGTCTA
GGTGGCCTCATACCTCAGGTTGATGCCGAGGGAGGGAGGGAGGAAGGGAG
GGAGGGGGGGAAGAGGGGGAAGAGAGGGCGGGAAAGACAGAAAGGCAGCG
TCGATTTTCGCACATTTATCCCATCCATTTGCACGTCACGTTCCACGTGC
CACAACATGAGGTCGTCGTCTCTCAAGCCTACACTCCCTCCGTCCCTCCC
TCCCTCCCTCCCTCCATCTTTCCTCAGGGACGCCTACGCCCTTTTTCCCA
AGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTG
CGGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAG
GAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGG
AAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGA
GCACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACTC
ATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACA
CCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAACTGCCAGCT
GGAGTCAGAAACGTACGCCAAAAACGCCTACGGGGCGCCTCGCACTGGTG
CTGCCATTCCTACTTCT

Coding sequence (CDS) from alignment at scaffold_87:5720..7586+

>mRNA_11180 ID=mRNA_11180|Name=jgi.p|Nanoce1779_2|614485|organism=Nannochloropsis oceanica|type=CDS|length=5418bp|location=Sequence derived from alignment at scaffold_87:5720..7586+ (Nannochloropsis oceanica)
ATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGA
TGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTA
GAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCTACG
GATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCTCAT
CCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAAAGA
AGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGGATG
AAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGGAAT
GATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAGTGATAGACC
GCGCGCCCATCACTCAGTGGTCATACCTAGACGGCAGAGTCCTGCTGATT
GGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAACAC
AGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCTACG
CCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCC
TTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAG
GAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGG
AACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAA
GGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATACAG
GCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGA
ATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCT
TAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC
CGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGC
CTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCT
ACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCT
CATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAA
AGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGG
ATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGG
AATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAGTGATAG
ACCGCGCGCCCATCACTCAGTGGTCATACCTAGACGGCAGAGTCCTGCTG
ATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAA
CACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCT
ACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAG
GCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAG
GAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAA
GGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGG
GAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATA
CAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAA
CGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTC
CCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGC
AGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGA
AGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCC
GCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAA
GCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGA
TAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACC
CGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCT
GGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAGTGA
TAGACCGCGCGCCCATCACTCAGTGGTCATACCTAGACGGCAGAGTCCTG
CTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGC
GAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACG
CCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTC
GAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAG
GAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAG
GAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGA
AGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATAT
ATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTG
GAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCAC
TTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTT
GGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACG
GGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTAC
CCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAG
CAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCG
TGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCT
ACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACAT
TCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAG
TGATAGACCGCGCGCCCATCACTCAGTGGTCATACCTAGACGGCAGAGTC
CTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGG
CGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGG
ACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCG
TTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGT
AAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGG
GAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAG
GGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTA
TATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAA
CTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTC
CACTTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCAT
CTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCG
ACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCT
TACCCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACC
GAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGG
CCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAAT
CCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGA
CATTCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTC
CAGTGATAGACCGCGCGCCCATCACTCAGTGGTCATACCTAGACGGCAGA
GTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCA
AGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCA
GGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCG
GCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCA
GGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGA
AGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGG
AAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCAT
GTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGA
GAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCT
TTCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATG
CATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGG
GCGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATT
CCTTACCCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGA
ACCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATT
GGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGT
AATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCC
CGACATTCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGC
GTCCAGTGATAGACCGCGCGCCCATCACTCAGTGGTCATACCTAGACGGC
AGAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGG
GCAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACC
TCAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAG
GCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACAT
TCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAA
CGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAG
AGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGG
CATGTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAA
AGAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCT
TCTTTCCACTTCCCTTAA

Synonyms

Publications