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Properties
| Property Name | Value |
|---|
| TranscriptId | 614569 |
| Track | FilteredModels2 |
| ProteinId | 614483 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:4399..5572 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11179 ID=mRNA_11179|Name=jgi.p|Nanoce1779_2|614483|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
ACAGCTCCATTGACAAGCCAAAGAAGCAGCAAAAGCAGCCGCAGCAGATG
CCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAATCAG
TGTCCGAGCCAGCAACACACCCTCCGCCTCCGCTTCATCGTCGTCGTCTT
TCGGGGCCCGTATGGCCAGCACGTTCACCCGTGGCGGCGCTTCCCCCCCC
AGCTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGCGAT
CGTCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAACCC
TCGCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTGCGA
GGAGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGCTCT
CGGAGCGATTGATGCCAAGCTCCTCAAGAGGGTCAAAGCCGCCGGCAGCG
TAATTCGCAAGCAAACGTTTGAAACGCCCGCCCAAAGCGTTACGGAAGAC
ACGGGTGGGTAAGCTTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCAT
CCCTCCTTCCCTCCCTTCCTCTTGCAGGCATTTTCGAGTCCAAGTACAAG
GAGCCCCTCCTCTCCGTCTTCTGGCAAACCCTGCACACGCAACTGGCGCA
GGCC back to topprotein sequence of jgi.p|Nanoce1779_2|614483 >mRNA_11179-protein ID=mRNA_11179-protein|Name=jgi.p|Nanoce1779_2|614483|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MPPARLALLVVVLSHLISVRASNTPSASASSSSSFGARMASTFTRGGASP
PSSTSRSEDESPAIDVAIVGGGIGGLATALALQTLAPHLSFRLYERSPTL
RGGEGTALTMWPNGLSALGAIDAKLLKRVKAAGSVIRKQTFETPAQSVTE
DTGG* back to topmRNA from alignment at scaffold_87:4399..5572+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11179 ID=mRNA_11179|Name=jgi.p|Nanoce1779_2|614483|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp|location=Sequence derived from alignment at scaffold_87:4399..5572+ (Nannochloropsis oceanica)
ACAGCTCCATTGACAAGCCAAAGAAGCAGCAAAAGCAGCCGCAGCAGATG
CCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAATCAG
GTACTTAACTTGTCATTGCCTCCCCCTCCCTCTTAGTCTAACCCACAAAC
CCCGCCACGCACCTCGATCCGACACATGCAGTGTCCGAGCCAGCAACACA
CCCTCCGCCTCCGCTTCATCGTCGTCGTCTTTCGGGGCCCGTATGGCCAG
CACGTTCACCCGTGGCGGCGCTTCCCCCCCCAGGTATGCTCCTTCCTCCA
TCCCCTCCTCCCCTTCCTCCCTCCCTCTCTCGCTTCCCGCAGTGCACCAC
ACGTTGGCATTTTACCGGCACATTTTAGAGTACATCTTTCCTGGTCCCTT
ACATTCGTGCTCATTCCCCTTTCCTCCCTTCATCCCTCCCTGTCCCTCTC
CCTAGCTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGC
GATCGTCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAA
CCCTCGCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTG
CGAGGAGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGC
TCTCGGAGCGATTGATGCCAAGCTCCTCAAGAGGGTAGGACGGGAGGGAT
GGAGAGGGGGAGGGAGGGAGGGGACGAGGGAGGGAAGAAATCACAGATGA
AACGAGGGAGTGAGTTCTGTGCTCTTCTTTCGGGAACGAAAAGGGGCAAA
TGGGAGAAAGGAGGGTGGGAAGGCACCGAGGAGGGGGAAGAGGAGGAGGA
GCACTCTTTCGCGTGCTTTTAATTTTAGCTTACCAGCCCTCCTCCCCTCT
CTCACTCCCTCCCTCCCTCCCTCCTCCTCCCTCCTCCTCCCTCCTCCTTA
GGTCAAAGCCGCCGGCAGCGTAATTCGCAAGCAAACGTTTGAAACGCCCG
CCCAAAGCGTTACGGAAGACACGGGTGGGTAAGCTTTCCCTCCCTCCCTC
CCTCCCTCCCTCTCTCCCATCCCTCCTTCCCTCCCTTCCTCTTGCAGGCA
TTTTCGAGTCCAAGTACAAGGAGCCCCTCCTCTCCGTCTTCTGGCAAACC
CTGCACACGCAACTGGCGCAGGCC back to topCoding sequence (CDS) from alignment at scaffold_87:4399..5572+ >mRNA_11179 ID=mRNA_11179|Name=jgi.p|Nanoce1779_2|614483|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_87:4399..5572+ (Nannochloropsis oceanica)
ATGCCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAAT
CAGTGTCCGAGCCAGCAACACACCCTCCGCCTCCGCTTCATCGTCGTCGT
CTTTCGGGGCCCGTATGGCCAGCACGTTCACCCGTGGCGGCGCTTCCCCC
CCCAGCTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGC
GATCGTCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAA
CCCTCGCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTG
CGAGGAGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGC
TCTCGGAGCGATTGATGCCAAGCTCCTCAAGAGGGTCAAAGCCGCCGGCA
GCGTAATTCGCAAGCAAACGTTTGAAACGCCCGCCCAAAGCGTTACGGAA
GACACGGGTGGGTAAATGCCGCCAGCGCGCCTGGCCCTCCTGGTCGTCGT
TCTTTCCCACTTAATCAGTGTCCGAGCCAGCAACACACCCTCCGCCTCCG
CTTCATCGTCGTCGTCTTTCGGGGCCCGTATGGCCAGCACGTTCACCCGT
GGCGGCGCTTCCCCCCCCAGCTCGACCTCACGTTCCGAAGACGAGTCACC
TGCGATCGACGTCGCGATCGTCGGCGGTGGCATTGGCGGCCTGGCCACAG
CCCTGGCTCTTCAAACCCTCGCCCCGCACCTTTCCTTTCGGCTTTATGAG
CGGTCTCCGACGTTGCGAGGAGGAGAAGGCACGGCATTGACCATGTGGCC
CAACGGCTTGTCGGCTCTCGGAGCGATTGATGCCAAGCTCCTCAAGAGGG
TCAAAGCCGCCGGCAGCGTAATTCGCAAGCAAACGTTTGAAACGCCCGCC
CAAAGCGTTACGGAAGACACGGGTGGGTAAATGCCGCCAGCGCGCCTGGC
CCTCCTGGTCGTCGTTCTTTCCCACTTAATCAGTGTCCGAGCCAGCAACA
CACCCTCCGCCTCCGCTTCATCGTCGTCGTCTTTCGGGGCCCGTATGGCC
AGCACGTTCACCCGTGGCGGCGCTTCCCCCCCCAGCTCGACCTCACGTTC
CGAAGACGAGTCACCTGCGATCGACGTCGCGATCGTCGGCGGTGGCATTG
GCGGCCTGGCCACAGCCCTGGCTCTTCAAACCCTCGCCCCGCACCTTTCC
TTTCGGCTTTATGAGCGGTCTCCGACGTTGCGAGGAGGAGAAGGCACGGC
ATTGACCATGTGGCCCAACGGCTTGTCGGCTCTCGGAGCGATTGATGCCA
AGCTCCTCAAGAGGGTCAAAGCCGCCGGCAGCGTAATTCGCAAGCAAACG
TTTGAAACGCCCGCCCAAAGCGTTACGGAAGACACGGGTGGGTAAATGCC
GCCAGCGCGCCTGGCCCTCCTGGTCGTCGTTCTTTCCCACTTAATCAGTG
TCCGAGCCAGCAACACACCCTCCGCCTCCGCTTCATCGTCGTCGTCTTTC
GGGGCCCGTATGGCCAGCACGTTCACCCGTGGCGGCGCTTCCCCCCCCAG
CTCGACCTCACGTTCCGAAGACGAGTCACCTGCGATCGACGTCGCGATCG
TCGGCGGTGGCATTGGCGGCCTGGCCACAGCCCTGGCTCTTCAAACCCTC
GCCCCGCACCTTTCCTTTCGGCTTTATGAGCGGTCTCCGACGTTGCGAGG
AGGAGAAGGCACGGCATTGACCATGTGGCCCAACGGCTTGTCGGCTCTCG
GAGCGATTGATGCCAAGCTCCTCAAGAGGGTCAAAGCCGCCGGCAGCGTA
ATTCGCAAGCAAACGTTTGAAACGCCCGCCCAAAGCGTTACGGAAGACAC
GGGTGGGTAA back to top
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