jgi.p|Nanoce1779_2|614537, mRNA_11195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614537
Unique NamemRNA_11195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length374
Alignment locationscaffold_87:51387..51760 +

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Properties
Property NameValue
TranscriptId614623
TrackFilteredModels2
ProteinId614537
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:51387..51760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614537gene_11195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614537mRNA_11195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11195CDS_11195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11195 ID=mRNA_11195|Name=jgi.p|Nanoce1779_2|614537|organism=Nannochloropsis oceanica|type=mRNA|length=374bp
TGAGTGGTTGTGGAAATCATGCCTTCTCGTTTGGCCAGGTGAAAGTCTTG
CTTCAATCCCACGCCATACTGGTGCAACAGACCTAGCTGAAGACCTTGAG
GATAGGGAGGTTAGAAAATCAATAGAATCGGGTCGTACTCGCATGCATAT
TTTATTTCATTTTTTCCTCCGCGCCTATGTCTCGCTTGGCTCTTCCTGCC
ATTCCTCCTCACCCTTCCTTCTCCTCTTCCACCACCGCCCCACCCGCTCT
TTCCACCCTTCCTGCCCTCCCTTCTTCTTCCTCCTCCTCCTCCTCCTCCC
CTTCCTCACCACCACCCCCATCATACTCCCATAAAAGAAAGCCACCACGG
TGCACGTTAATGTGATCACATTAA
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protein sequence of jgi.p|Nanoce1779_2|614537

>mRNA_11195-protein ID=mRNA_11195-protein|Name=jgi.p|Nanoce1779_2|614537|organism=Nannochloropsis oceanica|type=polypeptide|length=64bp
MHILFHFFLRAYVSLGSSCHSSSPFLLLFHHRPTRSFHPSCPPFFFLLLL
LLPFLTTTPIILP*
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mRNA from alignment at scaffold_87:51387..51760+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11195 ID=mRNA_11195|Name=jgi.p|Nanoce1779_2|614537|organism=Nannochloropsis oceanica|type=mRNA|length=374bp|location=Sequence derived from alignment at scaffold_87:51387..51760+ (Nannochloropsis oceanica)
TGAGTGGTTGTGGAAATCATGCCTTCTCGTTTGGCCAGGTGAAAGTCTTG
CTTCAATCCCACGCCATACTGGTGCAACAGACCTAGCTGAAGACCTTGAG
GATAGGGAGGTTAGAAAATCAATAGAATCGGGTCGTACTCGCATGCATAT
TTTATTTCATTTTTTCCTCCGCGCCTATGTCTCGCTTGGCTCTTCCTGCC
ATTCCTCCTCACCCTTCCTTCTCCTCTTCCACCACCGCCCCACCCGCTCT
TTCCACCCTTCCTGCCCTCCCTTCTTCTTCCTCCTCCTCCTCCTCCTCCC
CTTCCTCACCACCACCCCCATCATACTCCCATAAAAGAAAGCCACCACGG
TGCACGTTAATGTGATCACATTAA
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Coding sequence (CDS) from alignment at scaffold_87:51387..51760+

>mRNA_11195 ID=mRNA_11195|Name=jgi.p|Nanoce1779_2|614537|organism=Nannochloropsis oceanica|type=CDS|length=192bp|location=Sequence derived from alignment at scaffold_87:51387..51760+ (Nannochloropsis oceanica)
ATGCATATTTTATTTCATTTTTTCCTCCGCGCCTATGTCTCGCTTGGCTC
TTCCTGCCATTCCTCCTCACCCTTCCTTCTCCTCTTCCACCACCGCCCCA
CCCGCTCTTTCCACCCTTCCTGCCCTCCCTTCTTCTTCCTCCTCCTCCTC
CTCCTCCCCTTCCTCACCACCACCCCCATCATACTCCCATAA
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Synonyms
Publications