jgi.p|Nanoce1779_2|433183, mRNA_11181 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|433183
Unique Name	mRNA_11181
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1414
Alignment location	scaffold_87:8327..10705 +

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Properties


Property Name	Value
TranscriptId	433269
Track	FilteredModels2
ProteinId	433183

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_87	supercontig	scaffold_87:8327..10705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|433183	gene_11181	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|433183	mRNA_11181-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11181	CDS_11181	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_87:8327..10705+
coding sequence from alignment at scaffold_87:8327..10705+

mRNA sequence

>mRNA_11181 ID=mRNA_11181|Name=jgi.p|Nanoce1779_2|433183|organism=Nannochloropsis oceanica|type=mRNA|length=1414bp
CATGTGACCACGTCGGCTTTCCTCCGCTTCAACCTGGCTTGACACATGCC
GTCTGCTTTTCTCTAAGGCCGAGTTGAGGTGGTGCTCTCAAATTTCTGGA
TGGCTTTGTGGTAGATGACAGCCACTCACCTTGGAAGGGAGCACAGGTAC
CACACACACCCTAGGATTGGGTTGCAAAATGAGGGGATAAAGCTCATCTC
CACGCTGACGATCTCGACGAAACAGAAACACTTCAGACCGCACTGATCCA
ATCGTCGTCCTCGACTTGAGTGAGTCAGGCCCAGGTGACATAGCATAGTC
TTCGTCAGCAACAACAGATGGGTTCGCGCTACAACCAACAAGCAAGTGGA
ACAACGCTTGACGCGTGCCTTCTGTCCTCAACCGAGCCTACACTTGACGC
ACATGTTTCACACAATACCTTGCATAGGTCGCAAGCCACCCAAAAATAGG
CCCAAAGGACGCAGTAGGGCGCGTTTATTCACGTGTCCCGCGCGCGGCGC
CCCCATTTCCCTCCCTTCTCTCACCCGGCAACACACCATATCGGTGGCGG
CGGAAGACAAGGCTACAGTCGCTGCGGTGTTTTCGTCAATGGCAATGCTT
AAACTTCAGTCGAGCCACAGCACCTCCAGCGAATCTCTGGCCACCACGAT
CCTCCCCTCCTTCTGCTCCTCCTCCCGTTCCTCCTCCTCCCTCTCCTCTC
TAAGCGTCCCCTTTGGGCTGGGAGATACCTCCCCTTCCCGCTTGTCCTCC
TCCTCCTCCTCCTCCGGTTCTTCTTTTTCCTCCTATTCCACAAGCACCGC
CAGGAGAAAACGCAAATCCCATGACCTAGACCTTCGCTACCCAGGGGATG
GAGGAGCAGAAGAGATTGAGGACGAGGACGAGGAGGACGAGGAGGACGAG
GAGGAGGGAGGGGAAGGCAACAGAGATGGGACTGAGGACGGGAGCGAGGG
ATGGGCGGAGGAAGGGCCTGCCAGCTATTGTATGGGAGGGCGTGGGAGAG
AGGGAGGGTGGGCGCACCTGGTAGATCCTGCCGAGATGCAAGTCGTGCAG
GAAATCAGCGAGGACGAAGACGAAGACGAGGAAGAGAACGAGCTTTGGAA
GGAGGATGAAGAGGAGGAATGGAAGGAAGGGGGAGTGCCGTCATTTTCAC
CCATGTCGATCCACCTGCTTAAAAGGGGTTTGCATGCGAGGCAAAATATG
GTCTTGCCTCCAAAAAGAAACGGAAGGAGGGAAGGCATCGCAGCCAATGT
TGCTGCTCCGGCTCCGGTACTGGTAGTAGCGGAAGGAGGGGAAAGGGTTA
TGTAGTGAAAATGTGAAATATGACGCGAATTTGATATGATAGAATGGGTT
GTTAGAATAGAATGTTTTGCCTTCCACGTTGCCGTGCGGGAAAGTGTCCA
AACGGAACGGACCG

protein sequence of jgi.p|Nanoce1779_2|433183

>mRNA_11181-protein ID=mRNA_11181-protein|Name=jgi.p|Nanoce1779_2|433183|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MFHTIPCIGRKPPKNRPKGRSRARLFTCPARGAPISLPSLTRQHTISVAA
EDKATVAAVFSSMAMLKLQSSHSTSSESLATTILPSFCSSSRSSSSLSSL
SVPFGLGDTSPSRLSSSSSSSGSSFSSYSTSTARRKRKSHDLDLRYPGDG
GAEEIEDEDEEDEEDEEEGGEGNRDGTEDGSEGWAEEGPASYCMGGRGRE
GGWAHLVDPAEMQVVQEISEDEDEDEEENELWKEDEEEEWKEGGVPSFSP
MSIHLLKRGLHARQNMVLPPKRNGRREGIAANVAAPAPVLVVAEGGERVM
*

mRNA from alignment at scaffold_87:8327..10705+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11181 ID=mRNA_11181|Name=jgi.p|Nanoce1779_2|433183|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp|location=Sequence derived from alignment at scaffold_87:8327..10705+ (Nannochloropsis oceanica)
CATGTGACCACGTCGGCTTTCCTCCGCTTCAACCTGGCTTGACACATGCC
GTCTGCTTTTCTCTAAGGCCGAGTTGAGGTGGTGCTCTCAAATTTCTGGA
TGGCTTTGTGGTAGATGACAGCCACTCACCTTGGAAGGGAGCACAGGTAC
CACACACACCCTAGGATTGGGTTGCAAAATGAGGGGATAAAGCTCATCTC
CACGCTGACGATCTCGACGAAACAGAAACACTTCAGACCGCACTGATCCA
ATCGTCGTCCTCGACTTGAGGTACTGATGTGGACCATGTCACACGTCTCC
AGCATCTATCCTTGCTTCTGCAATCTGCTCTCCTTTCGTGTCTGTTTTGG
GCATTGCATCTTGACTGGCTTTTCTTATCAGTATCACCACCCACTTAGTG
AGTCAGGCCCAGGTGACATAGCATAGTCTTCGTCAGCAACAACAGATGGG
TTCGCGCTACAACCAACAAGCAAGTGGAACAACGCTTGACGCGTGCCTTC
TGTCCTCAACCGAGCCTACACTTGACGCACATGTTTCACACAATACCTTG
CATAGGTCGCAAGCCACCCAAAAATAGGCCCAAAGGACGCAGTAGGGCGC
GTTTATTCACGTGTCCCGCGCGCGGCGCCCCCATTTGCTTCCCCTCCCCC
CCACCAACCCCTGCTACTTGGGCCTGAGCCGATTCACTGACAGCAGGTAA
GCTTCCCTGAAGTTGAGATGCAGTGGGAGGGTTGCGCCATTTAAAGCAGA
TGTTCAGGACTGGAAATTGCCAATCTATCGCGGTGTCTGGAAGCGCCCCT
ACTCTTTTCTGACGGAGACTTGCCGCTTAGTTCGGTCTCAGCAAGCACAC
CTCCTGACCCTCTGTCACTCACTCCGTCTTTGTATCCCTCCCCTCCTCAC
CCATCACCATAACAGGATTACCAGAAAACCAATGAAACGGAGCAAGACCG
TCGGTGACCTGGTTGGCCTCGGTCACTACGAGCGCCGCAGGCAGGTCTGG
GCCCGGAAAAAGGAACGCGCCTCCCTCCTCAAGTTCCCCTCTTCTCCCCC
TTCTTTAGCCTCGCCGATTCCCCCATCTATCCCCACGCATGGCTTTTCTG
TTGGTGCTGCCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGTCGCAACAGC
AGTACGAATAACAACGACGTGGCCGCACCGCGTCCACTGCGGGCGCATGT
CCCTCTTCAAGCACCTCCTCAACCATCACCTATTGGTGTTGGAGAGGGAG
AAATAGAAATGCTCCCTTCCCCCTGCCTTCCCTCCCTCCCTTCTCTCACC
CGGCAACACACCATATCGGTGGCGGCGGAAGACAAGGCTACAGTCGCTGC
GGTGTTTTCGTCAATGGCAATGGTAAGGAGAAAGGAAGGAAGGGCGGCCC
TGATTTGAGAGAGCAGAGAAAGCAATCAAATCAGTCAGTCACGCCTACTC
ACCACTTCCCTTCCCTTCCTCCCTCCCCCCTCTCCTACCCCCCTCCCTCC
TTCTCTTCCTCATTCACAGCTTAAACTTCAGTCGAGCCACAGCACCTCCA
GCGAATCTCTGGCCACCACGATCCTCCCCTCCTTCTGCTCCTCCTCCCGT
TCCTCCTCCTCCCTCTCCTCTCTAAGCGTCCCCTTTGGGCTGGGAGATAC
CTCCCCTTCCCGCTTGTCCTCCTCCTCCTCCTCCTCCGGTTCTTCTTTTT
CCTCCTATTCCACAAGCACCGCCAGGAGAAAACGCAAATCCCATGACCTA
GACCTTCGCTACCCAGGGGATGGAGGAGCAGAAGAGATTGAGGACGAGGA
CGAGGAGGACGAGGAGGACGAGGAGGAGGGAGGGGAAGGCAACAGAGATG
GGACTGAGGACGGGAGCGAGGGATGGGCGGAGGAAGGGCCTGCCAGCTAT
TGTATGGGAGGGCGTGGGAGAGAGGGAGGGTGGGCGCACCTGGTAGATCC
TGCCGAGATGCAAGTCGTGCAGGAAATCAGCGAGGACGAAGACGAAGACG
AGGAAGAGAACGAGCTTTGGAAGGAGGATGAAGAGGAGGAATGGAAGGAA
GGGGGAGTGCCGTCATTTTCACCCATGTCGATCCACCTGCTTAAAAGGGG
TTTGCATGCGAGGCAAAATATGGTCTTGCCTCCAAAAAGAAACGGAAGGA
GGGAAGGCATCGCAGCCAATGTTGCTGCTCCGGCTCCGGTACTGGTAGTA
GCGTAGGGATGTAAGTGTGGGAGAGGATGAATGAGAGGGAGGGAGGGAAG
GAGGGGAAAGGGTTATGTAGTGAAAATGTGAAATATGACGCGAATTTGAT
ATGATAGAATGGGTTGTTAGAATAGAATGTTTTGCCTTCCACGTTGCCGT
GCGGGAAAGTGTCCAAACGGAACGGACCG

Coding sequence (CDS) from alignment at scaffold_87:8327..10705+

>mRNA_11181 ID=mRNA_11181|Name=jgi.p|Nanoce1779_2|433183|organism=Nannochloropsis oceanica|type=CDS|length=3612bp|location=Sequence derived from alignment at scaffold_87:8327..10705+ (Nannochloropsis oceanica)
ATGTTTCACACAATACCTTGCATAGGTCGCAAGCCACCCAAAAATAGGCC
CAAAGGACGCAGTAGGGCGCGTTTATTCACGTGTCCCGCGCGCGGCGCCC
CCATTTCCCTCCCTTCTCTCACCCGGCAACACACCATATCGGTGGCGGCG
GAAGACAAGGCTACAGTCGCTGCGGTGTTTTCGTCAATGGCAATGCTTAA
ACTTCAGTCGAGCCACAGCACCTCCAGCGAATCTCTGGCCACCACGATCC
TCCCCTCCTTCTGCTCCTCCTCCCGTTCCTCCTCCTCCCTCTCCTCTCTA
AGCGTCCCCTTTGGGCTGGGAGATACCTCCCCTTCCCGCTTGTCCTCCTC
CTCCTCCTCCTCCGGTTCTTCTTTTTCCTCCTATTCCACAAGCACCGCCA
GGAGAAAACGCAAATCCCATGACCTAGACCTTCGCTACCCAGGGGATGGA
GGAGCAGAAGAGATTGAGGACGAGGACGAGGAGGACGAGGAGGACGAGGA
GGAGGGAGGGGAAGGCAACAGAGATGGGACTGAGGACGGGAGCGAGGGAT
GGGCGGAGGAAGGGCCTGCCAGCTATTGTATGGGAGGGCGTGGGAGAGAG
GGAGGGTGGGCGCACCTGGTAGATCCTGCCGAGATGCAAGTCGTGCAGGA
AATCAGCGAGGACGAAGACGAAGACGAGGAAGAGAACGAGCTTTGGAAGG
AGGATGAAGAGGAGGAATGGAAGGAAGGGGGAGTGCCGTCATTTTCACCC
ATGTCGATCCACCTGCTTAAAAGGGGTTTGCATGCGAGGCAAAATATGGT
CTTGCCTCCAAAAAGAAACGGAAGGAGGGAAGGCATCGCAGCCAATGTTG
CTGCTCCGGCTCCGGTACTGGTAGTAGCGGAAGGAGGGGAAAGGGTTATG
TAGATGTTTCACACAATACCTTGCATAGGTCGCAAGCCACCCAAAAATAG
GCCCAAAGGACGCAGTAGGGCGCGTTTATTCACGTGTCCCGCGCGCGGCG
CCCCCATTTCCCTCCCTTCTCTCACCCGGCAACACACCATATCGGTGGCG
GCGGAAGACAAGGCTACAGTCGCTGCGGTGTTTTCGTCAATGGCAATGCT
TAAACTTCAGTCGAGCCACAGCACCTCCAGCGAATCTCTGGCCACCACGA
TCCTCCCCTCCTTCTGCTCCTCCTCCCGTTCCTCCTCCTCCCTCTCCTCT
CTAAGCGTCCCCTTTGGGCTGGGAGATACCTCCCCTTCCCGCTTGTCCTC
CTCCTCCTCCTCCTCCGGTTCTTCTTTTTCCTCCTATTCCACAAGCACCG
CCAGGAGAAAACGCAAATCCCATGACCTAGACCTTCGCTACCCAGGGGAT
GGAGGAGCAGAAGAGATTGAGGACGAGGACGAGGAGGACGAGGAGGACGA
GGAGGAGGGAGGGGAAGGCAACAGAGATGGGACTGAGGACGGGAGCGAGG
GATGGGCGGAGGAAGGGCCTGCCAGCTATTGTATGGGAGGGCGTGGGAGA
GAGGGAGGGTGGGCGCACCTGGTAGATCCTGCCGAGATGCAAGTCGTGCA
GGAAATCAGCGAGGACGAAGACGAAGACGAGGAAGAGAACGAGCTTTGGA
AGGAGGATGAAGAGGAGGAATGGAAGGAAGGGGGAGTGCCGTCATTTTCA
CCCATGTCGATCCACCTGCTTAAAAGGGGTTTGCATGCGAGGCAAAATAT
GGTCTTGCCTCCAAAAAGAAACGGAAGGAGGGAAGGCATCGCAGCCAATG
TTGCTGCTCCGGCTCCGGTACTGGTAGTAGCGGAAGGAGGGGAAAGGGTT
ATGTAGATGTTTCACACAATACCTTGCATAGGTCGCAAGCCACCCAAAAA
TAGGCCCAAAGGACGCAGTAGGGCGCGTTTATTCACGTGTCCCGCGCGCG
GCGCCCCCATTTCCCTCCCTTCTCTCACCCGGCAACACACCATATCGGTG
GCGGCGGAAGACAAGGCTACAGTCGCTGCGGTGTTTTCGTCAATGGCAAT
GCTTAAACTTCAGTCGAGCCACAGCACCTCCAGCGAATCTCTGGCCACCA
CGATCCTCCCCTCCTTCTGCTCCTCCTCCCGTTCCTCCTCCTCCCTCTCC
TCTCTAAGCGTCCCCTTTGGGCTGGGAGATACCTCCCCTTCCCGCTTGTC
CTCCTCCTCCTCCTCCTCCGGTTCTTCTTTTTCCTCCTATTCCACAAGCA
CCGCCAGGAGAAAACGCAAATCCCATGACCTAGACCTTCGCTACCCAGGG
GATGGAGGAGCAGAAGAGATTGAGGACGAGGACGAGGAGGACGAGGAGGA
CGAGGAGGAGGGAGGGGAAGGCAACAGAGATGGGACTGAGGACGGGAGCG
AGGGATGGGCGGAGGAAGGGCCTGCCAGCTATTGTATGGGAGGGCGTGGG
AGAGAGGGAGGGTGGGCGCACCTGGTAGATCCTGCCGAGATGCAAGTCGT
GCAGGAAATCAGCGAGGACGAAGACGAAGACGAGGAAGAGAACGAGCTTT
GGAAGGAGGATGAAGAGGAGGAATGGAAGGAAGGGGGAGTGCCGTCATTT
TCACCCATGTCGATCCACCTGCTTAAAAGGGGTTTGCATGCGAGGCAAAA
TATGGTCTTGCCTCCAAAAAGAAACGGAAGGAGGGAAGGCATCGCAGCCA
ATGTTGCTGCTCCGGCTCCGGTACTGGTAGTAGCGGAAGGAGGGGAAAGG
GTTATGTAGATGTTTCACACAATACCTTGCATAGGTCGCAAGCCACCCAA
AAATAGGCCCAAAGGACGCAGTAGGGCGCGTTTATTCACGTGTCCCGCGC
GCGGCGCCCCCATTTCCCTCCCTTCTCTCACCCGGCAACACACCATATCG
GTGGCGGCGGAAGACAAGGCTACAGTCGCTGCGGTGTTTTCGTCAATGGC
AATGCTTAAACTTCAGTCGAGCCACAGCACCTCCAGCGAATCTCTGGCCA
CCACGATCCTCCCCTCCTTCTGCTCCTCCTCCCGTTCCTCCTCCTCCCTC
TCCTCTCTAAGCGTCCCCTTTGGGCTGGGAGATACCTCCCCTTCCCGCTT
GTCCTCCTCCTCCTCCTCCTCCGGTTCTTCTTTTTCCTCCTATTCCACAA
GCACCGCCAGGAGAAAACGCAAATCCCATGACCTAGACCTTCGCTACCCA
GGGGATGGAGGAGCAGAAGAGATTGAGGACGAGGACGAGGAGGACGAGGA
GGACGAGGAGGAGGGAGGGGAAGGCAACAGAGATGGGACTGAGGACGGGA
GCGAGGGATGGGCGGAGGAAGGGCCTGCCAGCTATTGTATGGGAGGGCGT
GGGAGAGAGGGAGGGTGGGCGCACCTGGTAGATCCTGCCGAGATGCAAGT
CGTGCAGGAAATCAGCGAGGACGAAGACGAAGACGAGGAAGAGAACGAGC
TTTGGAAGGAGGATGAAGAGGAGGAATGGAAGGAAGGGGGAGTGCCGTCA
TTTTCACCCATGTCGATCCACCTGCTTAAAAGGGGTTTGCATGCGAGGCA
AAATATGGTCTTGCCTCCAAAAAGAAACGGAAGGAGGGAAGGCATCGCAG
CCAATGTTGCTGCTCCGGCTCCGGTACTGGTAGTAGCGGAAGGAGGGGAA
AGGGTTATGTAG

Synonyms

Publications