scaffold_111, scaffold_111 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_111
Unique Name	scaffold_111
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	40470
Alignment location	jgi.p\|Nanoce1779_2\|42616:19339..20400 -
Alignment location	jgi.p\|Nanoce1779_2\|42616:19339..20400 -
Alignment location	CDS_11725:19453..20250 -
Alignment location	jgi.p\|Nanoce1779_2\|42726:24977..26212 -
Alignment location	jgi.p\|Nanoce1779_2\|42726:24977..26212 -
Alignment location	CDS_11728:26098..26121 -
Alignment location	CDS_11728:25754..25853 -
Alignment location	CDS_11728:25141..25601 -
Alignment location	jgi.p\|Nanoce1779_2\|570484:22600..23937 -
Alignment location	jgi.p\|Nanoce1779_2\|570484:22600..23937 -
Alignment location	CDS_11727:23266..23937 -
Alignment location	CDS_11727:22600..22722 -
Alignment location	jgi.p\|Nanoce1779_2\|616016:26359..28262 -
Alignment location	jgi.p\|Nanoce1779_2\|616016:26359..28262 -
Alignment location	CDS_11729:27762..28115 -
Alignment location	CDS_11729:27494..27642 -
Alignment location	CDS_11729:26910..27359 -
Alignment location	jgi.p\|Nanoce1779_2\|616036:30306..33634 +
Alignment location	jgi.p\|Nanoce1779_2\|616036:30306..33634 +
Alignment location	CDS_11730:30631..30888 +
Alignment location	CDS_11730:31059..31164 +
Alignment location	CDS_11730:31272..31321 +
Alignment location	CDS_11730:31490..31646 +
Alignment location	CDS_11730:31986..32094 +
Alignment location	CDS_11730:32225..32281 +
Alignment location	CDS_11730:32428..32677 +
Alignment location	CDS_11730:32906..33031 +
Alignment location	CDS_11730:33214..33351 +
Alignment location	jgi.p\|Nanoce1779_2\|616044:34117..35167 -
Alignment location	jgi.p\|Nanoce1779_2\|616044:34117..35167 -
Alignment location	CDS_11731:34961..35032 -
Alignment location	CDS_11731:34731..34789 -
Alignment location	CDS_11731:34561..34613 -
Alignment location	CDS_11731:34292..34368 -
Alignment location	jgi.p\|Nanoce1779_2\|616049:35774..37726 +
Alignment location	jgi.p\|Nanoce1779_2\|616049:35774..37726 +
Alignment location	CDS_11732:36253..36279 +
Alignment location	CDS_11732:36469..36621 +
Alignment location	CDS_11732:36799..36948 +
Alignment location	CDS_11732:37143..37293 +
Alignment location	CDS_11732:37472..37623 +
Alignment location	jgi.p\|Nanoce1779_2\|647353:4967..8694 +
Alignment location	jgi.p\|Nanoce1779_2\|647353:4967..8694 +
Alignment location	CDS_11722:4994..5065 +
Alignment location	CDS_11722:5178..5336 +
Alignment location	CDS_11722:5472..5597 +
Alignment location	CDS_11722:5734..5862 +
Alignment location	CDS_11722:6018..6170 +
Alignment location	CDS_11722:6261..6469 +
Alignment location	CDS_11722:6580..6798 +
Alignment location	CDS_11722:6973..7121 +
Alignment location	CDS_11722:7453..7811 +
Alignment location	CDS_11722:8005..8278 +
Alignment location	CDS_11722:8305..8348 +
Alignment location	jgi.p\|Nanoce1779_2\|647370:37741..39202 -
Alignment location	jgi.p\|Nanoce1779_2\|647370:37741..39202 -
Alignment location	CDS_11733:38174..39202 -
Alignment location	jgi.p\|Nanoce1779_2\|675471:8147..13327 -
Alignment location	jgi.p\|Nanoce1779_2\|675471:8147..13327 -
Alignment location	CDS_11723:12723..13222 -
Alignment location	CDS_11723:11457..12639 -
Alignment location	CDS_11723:10385..11392 -
Alignment location	CDS_11723:9889..10320 -
Alignment location	jgi.p\|Nanoce1779_2\|42616:19453..20250 -
Alignment location	jgi.p\|Nanoce1779_2\|42726:25141..26121 -
Alignment location	jgi.p\|Nanoce1779_2\|570484:22600..23937 -
Alignment location	jgi.p\|Nanoce1779_2\|616016:26910..28115 -
Alignment location	jgi.p\|Nanoce1779_2\|616036:30631..33351 +
Alignment location	jgi.p\|Nanoce1779_2\|616044:34292..35032 -
Alignment location	jgi.p\|Nanoce1779_2\|616049:36253..37623 +
Alignment location	jgi.p\|Nanoce1779_2\|647353:4994..8348 +
Alignment location	jgi.p\|Nanoce1779_2\|647370:38174..39202 -
Alignment location	jgi.p\|Nanoce1779_2\|675471:9889..13222 -
Alignment location	ncniL090:4968..39202 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|42616	gene	jgi.p\|Nanoce1779_2\|42616:19339..20400 -
jgi.p\|Nanoce1779_2\|42616	mRNA	jgi.p\|Nanoce1779_2\|42616:19339..20400 -
CDS_11725	CDS	CDS_11725:19453..20250 -
jgi.p\|Nanoce1779_2\|42726	gene	jgi.p\|Nanoce1779_2\|42726:24977..26212 -
jgi.p\|Nanoce1779_2\|42726	mRNA	jgi.p\|Nanoce1779_2\|42726:24977..26212 -
CDS_11728	CDS	CDS_11728:26098..26121 -
CDS_11728	CDS	CDS_11728:25754..25853 -
CDS_11728	CDS	CDS_11728:25141..25601 -
jgi.p\|Nanoce1779_2\|570484	gene	jgi.p\|Nanoce1779_2\|570484:22600..23937 -
jgi.p\|Nanoce1779_2\|570484	mRNA	jgi.p\|Nanoce1779_2\|570484:22600..23937 -
CDS_11727	CDS	CDS_11727:23266..23937 -
CDS_11727	CDS	CDS_11727:22600..22722 -
jgi.p\|Nanoce1779_2\|616016	gene	jgi.p\|Nanoce1779_2\|616016:26359..28262 -
jgi.p\|Nanoce1779_2\|616016	mRNA	jgi.p\|Nanoce1779_2\|616016:26359..28262 -
CDS_11729	CDS	CDS_11729:27762..28115 -
CDS_11729	CDS	CDS_11729:27494..27642 -
CDS_11729	CDS	CDS_11729:26910..27359 -
jgi.p\|Nanoce1779_2\|616036	gene	jgi.p\|Nanoce1779_2\|616036:30306..33634 +
jgi.p\|Nanoce1779_2\|616036	mRNA	jgi.p\|Nanoce1779_2\|616036:30306..33634 +
CDS_11730	CDS	CDS_11730:30631..30888 +
CDS_11730	CDS	CDS_11730:31059..31164 +
CDS_11730	CDS	CDS_11730:31272..31321 +
CDS_11730	CDS	CDS_11730:31490..31646 +
CDS_11730	CDS	CDS_11730:31986..32094 +
CDS_11730	CDS	CDS_11730:32225..32281 +
CDS_11730	CDS	CDS_11730:32428..32677 +
CDS_11730	CDS	CDS_11730:32906..33031 +
CDS_11730	CDS	CDS_11730:33214..33351 +
jgi.p\|Nanoce1779_2\|616044	gene	jgi.p\|Nanoce1779_2\|616044:34117..35167 -
jgi.p\|Nanoce1779_2\|616044	mRNA	jgi.p\|Nanoce1779_2\|616044:34117..35167 -
CDS_11731	CDS	CDS_11731:34961..35032 -
CDS_11731	CDS	CDS_11731:34731..34789 -
CDS_11731	CDS	CDS_11731:34561..34613 -
CDS_11731	CDS	CDS_11731:34292..34368 -
jgi.p\|Nanoce1779_2\|616049	gene	jgi.p\|Nanoce1779_2\|616049:35774..37726 +
jgi.p\|Nanoce1779_2\|616049	mRNA	jgi.p\|Nanoce1779_2\|616049:35774..37726 +
CDS_11732	CDS	CDS_11732:36253..36279 +
CDS_11732	CDS	CDS_11732:36469..36621 +
CDS_11732	CDS	CDS_11732:36799..36948 +
CDS_11732	CDS	CDS_11732:37143..37293 +
CDS_11732	CDS	CDS_11732:37472..37623 +
jgi.p\|Nanoce1779_2\|647353	gene	jgi.p\|Nanoce1779_2\|647353:4967..8694 +
jgi.p\|Nanoce1779_2\|647353	mRNA	jgi.p\|Nanoce1779_2\|647353:4967..8694 +
CDS_11722	CDS	CDS_11722:4994..5065 +
CDS_11722	CDS	CDS_11722:5178..5336 +
CDS_11722	CDS	CDS_11722:5472..5597 +
CDS_11722	CDS	CDS_11722:5734..5862 +
CDS_11722	CDS	CDS_11722:6018..6170 +
CDS_11722	CDS	CDS_11722:6261..6469 +
CDS_11722	CDS	CDS_11722:6580..6798 +
CDS_11722	CDS	CDS_11722:6973..7121 +
CDS_11722	CDS	CDS_11722:7453..7811 +
CDS_11722	CDS	CDS_11722:8005..8278 +
CDS_11722	CDS	CDS_11722:8305..8348 +
jgi.p\|Nanoce1779_2\|647370	gene	jgi.p\|Nanoce1779_2\|647370:37741..39202 -
jgi.p\|Nanoce1779_2\|647370	mRNA	jgi.p\|Nanoce1779_2\|647370:37741..39202 -
CDS_11733	CDS	CDS_11733:38174..39202 -
jgi.p\|Nanoce1779_2\|675471	gene	jgi.p\|Nanoce1779_2\|675471:8147..13327 -
jgi.p\|Nanoce1779_2\|675471	mRNA	jgi.p\|Nanoce1779_2\|675471:8147..13327 -
CDS_11723	CDS	CDS_11723:12723..13222 -
CDS_11723	CDS	CDS_11723:11457..12639 -
CDS_11723	CDS	CDS_11723:10385..11392 -
CDS_11723	CDS	CDS_11723:9889..10320 -
jgi.p\|Nanoce1779_2\|42616	polypeptide	jgi.p\|Nanoce1779_2\|42616:19453..20250 -
jgi.p\|Nanoce1779_2\|42726	polypeptide	jgi.p\|Nanoce1779_2\|42726:25141..26121 -
jgi.p\|Nanoce1779_2\|570484	polypeptide	jgi.p\|Nanoce1779_2\|570484:22600..23937 -
jgi.p\|Nanoce1779_2\|616016	polypeptide	jgi.p\|Nanoce1779_2\|616016:26910..28115 -
jgi.p\|Nanoce1779_2\|616036	polypeptide	jgi.p\|Nanoce1779_2\|616036:30631..33351 +
jgi.p\|Nanoce1779_2\|616044	polypeptide	jgi.p\|Nanoce1779_2\|616044:34292..35032 -
jgi.p\|Nanoce1779_2\|616049	polypeptide	jgi.p\|Nanoce1779_2\|616049:36253..37623 +
jgi.p\|Nanoce1779_2\|647353	polypeptide	jgi.p\|Nanoce1779_2\|647353:4994..8348 +
jgi.p\|Nanoce1779_2\|647370	polypeptide	jgi.p\|Nanoce1779_2\|647370:38174..39202 -
jgi.p\|Nanoce1779_2\|675471	polypeptide	jgi.p\|Nanoce1779_2\|675471:9889..13222 -
ncniL090	syntenic_region	ncniL090:4968..39202 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications