jgi.p|Nanoce1779_2|616049, mRNA_11732 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|616049
Unique Name	mRNA_11732
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1215
Alignment location	scaffold_111:35774..37726 +

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Properties


Property Name	Value
TranscriptId	616135
Track	FilteredModels2
ProteinId	616049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_111	supercontig	scaffold_111:35774..37726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616049	gene_11732	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|616049	mRNA_11732-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11732	CDS_11732	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_111:35774..37726+
coding sequence from alignment at scaffold_111:35774..37726+

mRNA sequence

>mRNA_11732 ID=mRNA_11732|Name=jgi.p|Nanoce1779_2|616049|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
CGCTACTCTCTCCTCCCATCCAACATGGTCCGACCATCCTCCTCGCCCTT
CCTGCTCCTCCTTTTCCTCCTCTTGTCTGCCCTAATAGCCCTTGCAACCG
CTGCCAGTGCCTTCGTCCTTGCCCCGTCCCCCTGTTGCCGAAGTGTGAGC
CACAGGTACGTCAATTGGGTGAAGAAAATGGGAAGCGAGGCAGGGAGGGG
AGGCTGGATCCCTCCCATTACCATCATCGATAGATACCCCCAATTCCTCC
CTCCCGTCCTCCCTTCCTTTCTTCCTTCGTCTTGCACAGCGGTAAGAGCA
TTAGAAGACACCTAGCGGCCAGCAACAGCGGTGGGGAAAAGAAGGTCAAA
GCTGCCACAGCAGCCGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCCGGC
ATGGGCGCGTGTGTCCGTGTTAGAATCACGACCGGTGGCGGAGGGATTAA
TTCATGTCGCGATCGACGGAGGGGACTTGATGGCATCCTATTCGGTGCCA
GGGCAGTACGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGGCTT
CTTCGCCGTGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGGCAG
AATTTCTGATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCGCAA
GCGGGGGAGGTCATTGACATGACTCCCGCCATGGGAAAGGGATATAAAAT
CCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGGCTG
GGAGTGGGATAGCCCCCATCCGTGCTGCGATTGAGAGTGAGATGCTGGGT
TTGAAGAAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTCGCC
CGCCCACCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGGGTC
TGGAAATAATCCCTTGCTTCTCCCGCGCGCCCGTGCCCATGAATTCATCC
GGGTATTGGGGCTACGTACAGCAAGGCCTCGCCGGCGATGATATTCGAAG
GCCGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACC
TCTCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTG
TTCAACTTCTAGAAGAAAGGAAAGTAGGGAGTGGGAAAGAGGGGGGGAAG
GAAGGAAGGAGGAAGGAGAGGGGGTAGTAGGCATGGAAACAAGGAAAAAA
TATTATTTTTAAAAA

protein sequence of jgi.p|Nanoce1779_2|616049

>mRNA_11732-protein ID=mRNA_11732-protein|Name=jgi.p|Nanoce1779_2|616049|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MASYSVPGQYVQLKPHAPGAKPGFFAVASPPSVKSGSSRAEFLIKKTENT
AWLCEAQAGEVIDMTPAMGKGYKIQSLDEEGINFVLLLAAGSGIAPIRAA
IESEMLGLKKMSRYSRLYLGVRSPAHLPYTEKFDAWREKGLEIIPCFSRA
PVPMNSSGYWGYVQQGLAGDDIRRPDKTAALVCGMKDMANLSTHILKQKG
VAPERILFNF*

mRNA from alignment at scaffold_111:35774..37726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11732 ID=mRNA_11732|Name=jgi.p|Nanoce1779_2|616049|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at scaffold_111:35774..37726+ (Nannochloropsis oceanica)
CGCTACTCTCTCCTCCCATCCAACATGGTCCGACCATCCTCCTCGCCCTT
CCTGCTCCTCCTTTTCCTCCTCTTGTCTGCCCTAATAGCCCTTGCAACCG
CTGCCAGTGCCTTCGTCCTTGCCCCGTCCCCCTGTTGCCGAAGTGTGAGC
CACAGGTACGTCAATTGGGTGAAGAAAATGGGAAGCGAGGCAGGGAGGGG
AGGCTGGATCCCTCCCATTACCATCATCGATAGATACCCCCAATTCCTCC
CTCCCGTCCTCCCTTCCTTTCTTCCTTCGTCTTGCACAGCGGTAAGAGCA
TTAGAAGACACCTAGCGGCCAGCAACAGCGGTGGGGAAAAGAAGGTCAAA
GCTGCCACAGCAGCCGCATCGAAGAAAGAGGAGCAGAAGGAGGAGCCGGC
ATGGGCGCGTGTGTCCGTGTTAGAATCACGACCGGTGGCGGAGGGATTAA
TTCATGTCGCGATCGACGGAGGGGACTTGATGGCATCCTATTCGGTGCCA
GGGCAGGTAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGATTGAGAGAG
GGAGGGGGGGGTAGCGAGGGTAGCGAGGGAGGGGGGGAAGGAGGGAGGGG
CGTGTGCAAGGCATAGAGGGAGGTTGATTTTCAAAAAATAAATAAACTCA
ATCGAAATATTCCCCTTCCTCGTCCTCCTTCCACCCTTTCCGAAGTACGT
CCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGGCTTCTTCGCCGTGG
CGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGGCAGAATTTCTGATC
AAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCGCAAGCGGGGGAGGT
GAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGGAAGGAGGGAGGGAG
GGAGGGAGAAATGTGATCTCCACACGTCGAGCACGTCGTACCTTCACGTA
TGTCTCTTCCCATCCCTACCCATCCATCCACCCTCCTTATCTCCACACTC
ACTCCTCGTACAATGCTTTTCGTAGGTCATTGACATGACTCCCGCCATGG
GAAAGGGATATAAAATCCAGTCCCTGGACGAGGAGGGGATTAACTTTGTC
CTCCTCCTGGCGGCTGGGAGTGGGATAGCCCCCATCCGTGCTGCGATTGA
GAGTGAGATGCTGGGTTTGAAGAAGGTACGTGCCCTCCCTCCCTCTCTCC
TTTCCTTCTTTCCCTTCCTTCCATCCTGCCTTCCTCTTATATCCACTAGA
GATGGCGCTACTTATTCATGGACCTCCCTCCTTCCCTCCACCCGACGTAC
CGACCAACCTCCCTCCCTCTCTGCCTGCCTCCCTTTCTCCCTCCCTCCCT
TCCCCCTCCCTCCCTGCAGATGTCGCGCTACTCCCGCCTCTATCTGGGAG
TCCGCTCGCCCGCCCACCTTCCTTACACGGAGAAATTCGACGCGTGGCGC
GAAAAGGGTCTGGAAATAATCCCTTGCTTCTCCCGCGCGCCCGTGCCCAT
GAATTCATCCGGGTATTGGGGTACGTACTCACTCACTCACTCACTCACTC
ACTCACTCCCTCCCTCCCTCCCTCCCTATCAAAGCCTGTGAGTCCATGCC
AGAGATTACCTCCAAATCACCCGGGTGGTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCACCCCTCCCCCCCTCCCTCCACCCCTCCCTTGTTTCTCAGGC
TACGTACAGCAAGGCCTCGCCGGCGATGATATTCGAAGGCCGGACAAAAC
CGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACCTCTCGACTCATA
TCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTGTTCAACTTCTAG
AAGAAAGGAAAGTAGGGAGTGGGAAAGAGGGGGGGAAGGAAGGAAGGAGG
AAGGAGAGGGGGTAGTAGGCATGGAAACAAGGAAAAAATATTATTTTTAA
AAA

Coding sequence (CDS) from alignment at scaffold_111:35774..37726+

>mRNA_11732 ID=mRNA_11732|Name=jgi.p|Nanoce1779_2|616049|organism=Nannochloropsis oceanica|type=CDS|length=3165bp|location=Sequence derived from alignment at scaffold_111:35774..37726+ (Nannochloropsis oceanica)
ATGGCATCCTATTCGGTGCCAGGGCAGTACGTCCAGCTGAAACCCCATGC
CCCTGGTGCCAAGCCCGGCTTCTTCGCCGTGGCGTCACCCCCGTCCGTTA
AGAGCGGGAGCAGCCGGGCAGAATTTCTGATCAAGAAGACGGAGAACACG
GCGTGGTTGTGTGAGGCGCAAGCGGGGGAGGTCATTGACATGACTCCCGC
CATGGGAAAGGGATATAAAATCCAGTCCCTGGACGAGGAGGGGATTAACT
TTGTCCTCCTCCTGGCGGCTGGGAGTGGGATAGCCCCCATCCGTGCTGCG
ATTGAGAGTGAGATGCTGGGTTTGAAGAAGATGTCGCGCTACTCCCGCCT
CTATCTGGGAGTCCGCTCGCCCGCCCACCTTCCTTACACGGAGAAATTCG
ACGCGTGGCGCGAAAAGGGTCTGGAAATAATCCCTTGCTTCTCCCGCGCG
CCCGTGCCCATGAATTCATCCGGGTATTGGGGCTACGTACAGCAAGGCCT
CGCCGGCGATGATATTCGAAGGCCGGACAAAACCGCGGCGCTGGTGTGCG
GGATGAAGGACATGGCCAACCTCTCGACTCATATCTTGAAGCAGAAGGGC
GTCGCGCCTGAGAGAATTTTGTTCAACTTCTAGATGGCATCCTATTCGGT
GCCAGGGCAGTACGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCG
GCTTCTTCGCCGTGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGG
GCAGAATTTCTGATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGC
GCAAGCGGGGGAGGTCATTGACATGACTCCCGCCATGGGAAAGGGATATA
AAATCCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCG
GCTGGGAGTGGGATAGCCCCCATCCGTGCTGCGATTGAGAGTGAGATGCT
GGGTTTGAAGAAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCT
CGCCCGCCCACCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAG
GGTCTGGAAATAATCCCTTGCTTCTCCCGCGCGCCCGTGCCCATGAATTC
ATCCGGGTATTGGGGCTACGTACAGCAAGGCCTCGCCGGCGATGATATTC
GAAGGCCGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCC
AACCTCTCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAAT
TTTGTTCAACTTCTAGATGGCATCCTATTCGGTGCCAGGGCAGTACGTCC
AGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGGCTTCTTCGCCGTGGCG
TCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGGCAGAATTTCTGATCAA
GAAGACGGAGAACACGGCGTGGTTGTGTGAGGCGCAAGCGGGGGAGGTCA
TTGACATGACTCCCGCCATGGGAAAGGGATATAAAATCCAGTCCCTGGAC
GAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGGCTGGGAGTGGGATAGC
CCCCATCCGTGCTGCGATTGAGAGTGAGATGCTGGGTTTGAAGAAGATGT
CGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTCGCCCGCCCACCTTCCT
TACACGGAGAAATTCGACGCGTGGCGCGAAAAGGGTCTGGAAATAATCCC
TTGCTTCTCCCGCGCGCCCGTGCCCATGAATTCATCCGGGTATTGGGGCT
ACGTACAGCAAGGCCTCGCCGGCGATGATATTCGAAGGCCGGACAAAACC
GCGGCGCTGGTGTGCGGGATGAAGGACATGGCCAACCTCTCGACTCATAT
CTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATTTTGTTCAACTTCTAGA
TGGCATCCTATTCGGTGCCAGGGCAGTACGTCCAGCTGAAACCCCATGCC
CCTGGTGCCAAGCCCGGCTTCTTCGCCGTGGCGTCACCCCCGTCCGTTAA
GAGCGGGAGCAGCCGGGCAGAATTTCTGATCAAGAAGACGGAGAACACGG
CGTGGTTGTGTGAGGCGCAAGCGGGGGAGGTCATTGACATGACTCCCGCC
ATGGGAAAGGGATATAAAATCCAGTCCCTGGACGAGGAGGGGATTAACTT
TGTCCTCCTCCTGGCGGCTGGGAGTGGGATAGCCCCCATCCGTGCTGCGA
TTGAGAGTGAGATGCTGGGTTTGAAGAAGATGTCGCGCTACTCCCGCCTC
TATCTGGGAGTCCGCTCGCCCGCCCACCTTCCTTACACGGAGAAATTCGA
CGCGTGGCGCGAAAAGGGTCTGGAAATAATCCCTTGCTTCTCCCGCGCGC
CCGTGCCCATGAATTCATCCGGGTATTGGGGCTACGTACAGCAAGGCCTC
GCCGGCGATGATATTCGAAGGCCGGACAAAACCGCGGCGCTGGTGTGCGG
GATGAAGGACATGGCCAACCTCTCGACTCATATCTTGAAGCAGAAGGGCG
TCGCGCCTGAGAGAATTTTGTTCAACTTCTAGATGGCATCCTATTCGGTG
CCAGGGCAGTACGTCCAGCTGAAACCCCATGCCCCTGGTGCCAAGCCCGG
CTTCTTCGCCGTGGCGTCACCCCCGTCCGTTAAGAGCGGGAGCAGCCGGG
CAGAATTTCTGATCAAGAAGACGGAGAACACGGCGTGGTTGTGTGAGGCG
CAAGCGGGGGAGGTCATTGACATGACTCCCGCCATGGGAAAGGGATATAA
AATCCAGTCCCTGGACGAGGAGGGGATTAACTTTGTCCTCCTCCTGGCGG
CTGGGAGTGGGATAGCCCCCATCCGTGCTGCGATTGAGAGTGAGATGCTG
GGTTTGAAGAAGATGTCGCGCTACTCCCGCCTCTATCTGGGAGTCCGCTC
GCCCGCCCACCTTCCTTACACGGAGAAATTCGACGCGTGGCGCGAAAAGG
GTCTGGAAATAATCCCTTGCTTCTCCCGCGCGCCCGTGCCCATGAATTCA
TCCGGGTATTGGGGCTACGTACAGCAAGGCCTCGCCGGCGATGATATTCG
AAGGCCGGACAAAACCGCGGCGCTGGTGTGCGGGATGAAGGACATGGCCA
ACCTCTCGACTCATATCTTGAAGCAGAAGGGCGTCGCGCCTGAGAGAATT
TTGTTCAACTTCTAG

Synonyms

Publications