jgi.p|Nanoce1779_2|616044, mRNA_11731 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|616044
Unique NamemRNA_11731
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length571
Alignment locationscaffold_111:34117..35167 -

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Properties
Property NameValue
TranscriptId616130
TrackFilteredModels2
ProteinId616044
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_111supercontigscaffold_111:34117..35167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616044gene_11731Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616044mRNA_11731-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11731CDS_11731Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11731 ID=mRNA_11731|Name=jgi.p|Nanoce1779_2|616044|organism=Nannochloropsis oceanica|type=mRNA|length=571bp
CTCCCTTCCTACCCCCTTGCCCCCCTCCATGCCGTTCCCGATGGCCTCTT
GGACGAAGACGGAGAGCCGCAATACGATGCCCCCACCCGTGCTAGGATTG
AAAAATTGATCCAAGAGAACAAAATCGTCCTGTTTATGAAAGGCAATCGT
TTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCATCCGGATCTTGAATCA
GTTGAATGTAGAATACGAGACAGTGGACGTGTTAGCCGACGAACGTATCC
GCGGGGAGATTAAAAGGTACAGCGCCTGGCCCACCATCCCCCAGCTATAT
CTTCAGGGAGAATTCGTCGGCGGATCAGACATCATCCTCGAGATGTACCA
GACGGGCGAGCTTCAAGAAATGATTGAGATCGCGGCAGCTTCCTGAGGGA
GGGAGGGAGGGGGAGAGGGAGGGAGGGAGAAGGAGGGAGAGGGAGAGGGA
GAGAGGGAGGATATAGTTGAGATCGCGGCAGCTTCGTGAGTGAGGGAGGG
AGGGAGAGAGGAAGGGAGGGAGGGTGGGAGAGAAAGAGGAAGAGAGAGAG
AATATAGTTGAGATCGCGGCA
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protein sequence of jgi.p|Nanoce1779_2|616044

>mRNA_11731-protein ID=mRNA_11731-protein|Name=jgi.p|Nanoce1779_2|616044|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MKGNRLFPSCGFSNTAIRILNQLNVEYETVDVLADERIRGEIKRYSAWPT
IPQLYLQGEFVGGSDIILEMYQTGELQEMIEIAAAS*
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mRNA from alignment at scaffold_111:34117..35167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11731 ID=mRNA_11731|Name=jgi.p|Nanoce1779_2|616044|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp|location=Sequence derived from alignment at scaffold_111:34117..35167- (Nannochloropsis oceanica)
CTCCCTTCCTACCCCCTTGCCCCCCTCCATGCCGTTCCCGATGGCCTCTT
GGACGAAGACGGAGAGCCGCAATACGATGCCCCCACCCGTGCTAGGATTG
AAAAATTGATCCAAGAGAACAAAATCGTCCTGTTTATGAAAGGCAATCGT
TTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCATCCGGATCTTGAATCA
GTTGAATGTAAGTGGAAAGAAGAGAGACGACCGGAGAGACGGTGGATTCA
TTGTAAAGTGTGCAGTTTGAGTCCCTCGGTGCGGCCTGCTCACCCGTCTG
TCTCTCCGTACTTATACTCCCAATGCCCTTGCGTGCATCGCCCCTCACTT
TCCCTCCCTCACTCCCTCCCTCCCTCAGGTAGAATACGAGACAGTGGACG
TGTTAGCCGACGAACGTATCCGCGGGGAGATTAAAAGGTACCTCTCTTCC
TCCCTCCATTTTTTCCCTCCCTCCTTTCCTCTGACTCCACTGTCAAGTCA
GACGGTTTCTAGAAGCGTGCACTCATCCTCACCGCCCCCCCCCCCTCACT
CCAGGTACAGCGCCTGGCCCACCATCCCCCAGCTATATCTTCAGGGAGAA
TTCGTCGGTACGTCTGACTGTGTGCTCCCTCCCTCCCTCCCTCCCCTCCT
TCCCCTCCTCTTTCCCTTCCCTCCCTCCCCCCTCCTTGAACTCCTCCCTC
CTCCTCCAGGCGGGTCAAACATTATTCTCAGAGCCCACCATCCTCTTTCT
CCCTCCTTTCCTCCTTTACTCCTTTCCTCCCTCCCTCCCCCTTCCCCAGG
CGGATCAGACATCATCCTCGAGATGTACCAGACGGGCGAGCTTCAAGAAA
TGATTGAGATCGCGGCAGCTTCCTGAGGGAGGGAGGGAGGGGGAGAGGGA
GGGAGGGAGAAGGAGGGAGAGGGAGAGGGAGAGAGGGAGGATATAGTTGA
GATCGCGGCAGCTTCGTGAGTGAGGGAGGGAGGGAGAGAGGAAGGGAGGG
AGGGTGGGAGAGAAAGAGGAAGAGAGAGAGAATATAGTTGAGATCGCGGC
A
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Coding sequence (CDS) from alignment at scaffold_111:34117..35167-

>mRNA_11731 ID=mRNA_11731|Name=jgi.p|Nanoce1779_2|616044|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_111:34117..35167- (Nannochloropsis oceanica)
GCGGATCAGACATCATCCTCGAGATGTACCAGACGGGCGAGCTTCAAGAA
ATGATTGAGATCGCGGCAGCTTCCTGAGTACAGCGCCTGGCCCACCATCC
CCCAGCTATATCTTCAGGGAGAATTCGTCGGTAGAATACGAGACAGTGGA
CGTGTTAGCCGACGAACGTATCCGCGGGGAGATTAAAAGATGAAAGGCAA
TCGTTTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCATCCGGATCTTGA
ATCAGTTGAATGCGGATCAGACATCATCCTCGAGATGTACCAGACGGGCG
AGCTTCAAGAAATGATTGAGATCGCGGCAGCTTCCTGAGTACAGCGCCTG
GCCCACCATCCCCCAGCTATATCTTCAGGGAGAATTCGTCGGTAGAATAC
GAGACAGTGGACGTGTTAGCCGACGAACGTATCCGCGGGGAGATTAAAAG
ATGAAAGGCAATCGTTTGTTTCCGTCGTGCGGGTTTAGCAACACCGCCAT
CCGGATCTTGAATCAGTTGAATGCGGATCAGACATCATCCTCGAGATGTA
CCAGACGGGCGAGCTTCAAGAAATGATTGAGATCGCGGCAGCTTCCTGAG
TACAGCGCCTGGCCCACCATCCCCCAGCTATATCTTCAGGGAGAATTCGT
CGGTAGAATACGAGACAGTGGACGTGTTAGCCGACGAACGTATCCGCGGG
GAGATTAAAAGATGAAAGGCAATCGTTTGTTTCCGTCGTGCGGGTTTAGC
AACACCGCCATCCGGATCTTGAATCAGTTGAATGCGGATCAGACATCATC
CTCGAGATGTACCAGACGGGCGAGCTTCAAGAAATGATTGAGATCGCGGC
AGCTTCCTGAGTACAGCGCCTGGCCCACCATCCCCCAGCTATATCTTCAG
GGAGAATTCGTCGGTAGAATACGAGACAGTGGACGTGTTAGCCGACGAAC
GTATCCGCGGGGAGATTAAAAGATGAAAGGCAATCGTTTGTTTCCGTCGT
GCGGGTTTAGCAACACCGCCATCCGGATCTTGAATCAGTTGAAT
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Synonyms
Publications